RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 GINM1Q9NU53 330 aa17.77■□□□□ 0.44
TRIM28-207ENST00000597136 RNF186Q9NXI6 227 aa17.77■□□□□ 0.44
TRIM28-207ENST00000597136 TAOK2Q9UL54 1235 aa17.77■□□□□ 0.44
TRIM28-207ENST00000597136 RLFQ13129 1914 aa17.77■□□□□ 0.44
TRIM28-207ENST00000597136 A0A1W2PRG0 241 aa17.76■□□□□ 0.43
TRIM28-207ENST00000597136 BTBD19C9JJ37 291 aa17.76■□□□□ 0.43
TRIM28-207ENST00000597136 CETPP11597 493 aa17.76■□□□□ 0.43
TRIM28-207ENST00000597136 INHBEP58166 350 aa17.76■□□□□ 0.43
TRIM28-207ENST00000597136 PDE4BQ07343 736 aa17.76■□□□□ 0.43
TRIM28-207ENST00000597136 SREBF2Q12772 1141 aa17.76■□□□□ 0.43
TRIM28-207ENST00000597136 NECTIN1Q15223 517 aa17.76■□□□□ 0.43
TRIM28-207ENST00000597136 ZNF444Q8N0Y2 327 aaPredicted RBP17.76■□□□□ 0.43
TRIM28-207ENST00000597136 TBC1D32Q96NH3 1257 aa17.76■□□□□ 0.43
TRIM28-207ENST00000597136 R3HDMLQ9H3Y0 253 aa17.76■□□□□ 0.43
TRIM28-207ENST00000597136 A0A0G2JLL6 359 aaPredicted RBP17.75■□□□□ 0.43
TRIM28-207ENST00000597136 ZNF213O14771 459 aa17.75■□□□□ 0.43
TRIM28-207ENST00000597136 FOXN1O15353 648 aa17.75■□□□□ 0.43
TRIM28-207ENST00000597136 MGAMO43451 1857 aa17.75■□□□□ 0.43
TRIM28-207ENST00000597136 SLC3A2P08195 630 aaKnown RBP17.75■□□□□ 0.43
TRIM28-207ENST00000597136 FGRP09769 529 aa17.75■□□□□ 0.43
TRIM28-207ENST00000597136 COL11A1P12107 1806 aaPredicted RBP17.75■□□□□ 0.43
TRIM28-207ENST00000597136 HSPA4P34932 840 aa17.75■□□□□ 0.43
TRIM28-207ENST00000597136 HMGCS2P54868 508 aa17.75■□□□□ 0.43
TRIM28-207ENST00000597136 GPAT2Q6NUI2 795 aa17.75■□□□□ 0.43
TRIM28-207ENST00000597136 GADL1Q6ZQY3 521 aa17.75■□□□□ 0.43
TRIM28-207ENST00000597136 TMEM179Q6ZVK1 233 aa17.75■□□□□ 0.43
TRIM28-207ENST00000597136 PRRT2Q7Z6L0 340 aaPredicted RBP17.75■□□□□ 0.43
TRIM28-207ENST00000597136 REM2Q8IYK8 340 aaPredicted RBP17.75■□□□□ 0.43
TRIM28-207ENST00000597136 AS3MTQ9HBK9 375 aa17.75■□□□□ 0.43
TRIM28-207ENST00000597136 CTNNA3Q9UI47 895 aa17.75■□□□□ 0.43
TRIM28-207ENST00000597136 TAF6LQ9Y6J9 622 aa17.75■□□□□ 0.43
TRIM28-207ENST00000597136 TBC1D8O95759 1140 aa17.74■□□□□ 0.43
TRIM28-207ENST00000597136 RBM25P49756 843 aaKnown RBP17.74■□□□□ 0.43
TRIM28-207ENST00000597136 BACE1P56817 501 aa17.74■□□□□ 0.43
TRIM28-207ENST00000597136 TFAP4Q01664 338 aa17.74■□□□□ 0.43
TRIM28-207ENST00000597136 MTMR2Q13614 643 aa17.74■□□□□ 0.43
TRIM28-207ENST00000597136 ZYXQ15942 572 aaKnown RBP17.74■□□□□ 0.43
TRIM28-207ENST00000597136 SMCHD1A6NHR9 2005 aa17.74■□□□□ 0.43
TRIM28-207ENST00000597136 USP17L10C9JJH3 530 aa17.74■□□□□ 0.43
TRIM28-207ENST00000597136 MCCP23508 829 aa17.74■□□□□ 0.43
TRIM28-207ENST00000597136 RRP12Q5JTH9 1297 aaKnown RBP17.74■□□□□ 0.43
TRIM28-207ENST00000597136 AKNAD1Q5T1N1 836 aa17.74■□□□□ 0.43
TRIM28-207ENST00000597136 CREB3L3Q68CJ9 461 aa17.74■□□□□ 0.43
TRIM28-207ENST00000597136 ZSWIM8A7E2V4 1837 aa17.74■□□□□ 0.43
TRIM28-207ENST00000597136 SLC27A2O14975 620 aa17.73■□□□□ 0.43
TRIM28-207ENST00000597136 ORC4O43929 436 aa17.73■□□□□ 0.43
TRIM28-207ENST00000597136 CYP21A2P08686 494 aa17.73■□□□□ 0.43
TRIM28-207ENST00000597136 TREML2Q5T2D2 321 aa17.73■□□□□ 0.43
TRIM28-207ENST00000597136 KCNB2Q92953 911 aa17.73■□□□□ 0.43
TRIM28-207ENST00000597136 BEGAINQ9BUH8 593 aa17.73■□□□□ 0.43
TRIM28-207ENST00000597136 ZNF287Q9HBT7 754 aa17.73■□□□□ 0.43
TRIM28-207ENST00000597136 TOMM22Q9NS69 142 aa17.73■□□□□ 0.43
TRIM28-207ENST00000597136 EMILIN3Q9NT22 766 aa17.73■□□□□ 0.43
TRIM28-207ENST00000597136 NEDD4P46934 1319 aa17.72■□□□□ 0.43
TRIM28-207ENST00000597136 IGKV6D-41A0A0C4DH26 115 aa17.72■□□□□ 0.43
TRIM28-207ENST00000597136 RANBP6O60518 1105 aaKnown RBP17.72■□□□□ 0.43
TRIM28-207ENST00000597136 NMT2O60551 498 aa17.72■□□□□ 0.43
TRIM28-207ENST00000597136 EEF2P13639 858 aaKnown RBP17.72■□□□□ 0.43
TRIM28-207ENST00000597136 ATP2B2Q01814 1243 aa17.72■□□□□ 0.43
TRIM28-207ENST00000597136 IMMTQ16891 758 aaKnown RBP17.72■□□□□ 0.43
TRIM28-207ENST00000597136 SH3D19Q5HYK7 790 aa17.72■□□□□ 0.43
TRIM28-207ENST00000597136 KIAA1755Q5JYT7 1200 aa17.72■□□□□ 0.43
TRIM28-207ENST00000597136 RNF20Q5VTR2 975 aa17.72■□□□□ 0.43
TRIM28-207ENST00000597136 MFSD6Q6ZSS7 791 aa17.72■□□□□ 0.43
TRIM28-207ENST00000597136 RASEFQ8IZ41 740 aa17.72■□□□□ 0.43
TRIM28-207ENST00000597136 NEDD1Q8NHV4 660 aa17.72■□□□□ 0.43
TRIM28-207ENST00000597136 STAG1Q8WVM7 1258 aa17.72■□□□□ 0.43
TRIM28-207ENST00000597136 TBC1D2Q9BYX2 928 aa17.72■□□□□ 0.43
TRIM28-207ENST00000597136 ZNFX1Q9P2E3 1918 aaKnown RBP17.72■□□□□ 0.43
TRIM28-207ENST00000597136 TSPY3P0CV98 308 aa17.71■□□□□ 0.43
TRIM28-207ENST00000597136 TSPY8P0CW00 308 aa17.71■□□□□ 0.43
TRIM28-207ENST00000597136 ICA1Q05084 483 aa17.71■□□□□ 0.43
TRIM28-207ENST00000597136 CEP95Q96GE4 821 aa17.71■□□□□ 0.43
TRIM28-207ENST00000597136 KANSL2Q9H9L4 492 aa17.71■□□□□ 0.43
TRIM28-207ENST00000597136 IL17RBQ9NRM6 502 aa17.71■□□□□ 0.43
TRIM28-207ENST00000597136 BAZ2BQ9UIF8 2168 aaKnown RBP17.71■□□□□ 0.43
TRIM28-207ENST00000597136 MYH6P13533 1939 aa17.71■□□□□ 0.43
TRIM28-207ENST00000597136 TSPY2A6NKD2 308 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 C19orf81C9J6K1 198 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 PDHXO00330 501 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 FASTKD5Q7L8L6 764 aaKnown RBP17.7■□□□□ 0.42
TRIM28-207ENST00000597136 ANKRD23Q86SG2 305 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 KIAA1683Q9H0B3 1180 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 SNX14Q9Y5W7 946 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 ZKSCAN1P17029 563 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-207ENST00000597136 ANAPC15P60006 121 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 CRHR2Q13324 411 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 TSGA10IPQ3SY00 556 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 OTUD7BQ6GQQ9 843 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 USP17L2Q6R6M4 530 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 STOX1Q6ZVD7 989 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 IL17RAQ96F46 866 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 FEZ1Q99689 392 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 TSHZ2Q9NRE2 1034 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 MTMR4Q9NYA4 1195 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 CLIP2Q9UDT6 1046 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 TMX2Q9Y320 296 aa17.7■□□□□ 0.42
TRIM28-207ENST00000597136 B4E1Z4 1266 aa17.69■□□□□ 0.42
TRIM28-207ENST00000597136 CYP2C8P10632 490 aa17.69■□□□□ 0.42
TRIM28-207ENST00000597136 HSPA8P11142 646 aaKnown RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms