RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 ROBO3Q96MS0 1386 aa20.58■□□□□ 0.88
SHKBP1-212ENST00000596163 HSPD1P10809 573 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-212ENST00000596163 AKR1B1P15121 316 aa20.57■□□□□ 0.88
SHKBP1-212ENST00000596163 GUCY1A2P33402 732 aa20.57■□□□□ 0.88
SHKBP1-212ENST00000596163 KIF22Q14807 665 aa20.57■□□□□ 0.88
SHKBP1-212ENST00000596163 VPS53Q5VIR6 699 aa20.57■□□□□ 0.88
SHKBP1-212ENST00000596163 CTU1Q7Z7A3 348 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-212ENST00000596163 KIAA1683Q9H0B3 1180 aa20.57■□□□□ 0.88
SHKBP1-212ENST00000596163 KANSL2Q9H9L4 492 aa20.57■□□□□ 0.88
SHKBP1-212ENST00000596163 ARHGEF10LQ9HCE6 1279 aa20.57■□□□□ 0.88
SHKBP1-212ENST00000596163 SMIM22K7EJ46 135 aa20.56■□□□□ 0.88
SHKBP1-212ENST00000596163 DGKZQ13574 1117 aa20.56■□□□□ 0.88
SHKBP1-212ENST00000596163 PKN2Q16513 984 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-212ENST00000596163 TREML2Q5T2D2 321 aa20.56■□□□□ 0.88
SHKBP1-212ENST00000596163 ZNF589Q86UQ0 364 aaPredicted RBP20.56■□□□□ 0.88
SHKBP1-212ENST00000596163 STK11IPQ8N1F8 1099 aa20.56■□□□□ 0.88
SHKBP1-212ENST00000596163 SMCR8Q8TEV9 937 aaPredicted RBP20.56■□□□□ 0.88
SHKBP1-212ENST00000596163 FGAP02671 866 aa20.55■□□□□ 0.88
SHKBP1-212ENST00000596163 CYP2C8P10632 490 aa20.55■□□□□ 0.88
SHKBP1-212ENST00000596163 HOXA7P31268 230 aaPredicted RBP20.55■□□□□ 0.88
SHKBP1-212ENST00000596163 ICA1Q05084 483 aa20.55■□□□□ 0.88
SHKBP1-212ENST00000596163 C17orf99Q6UX52 265 aa20.55■□□□□ 0.88
SHKBP1-212ENST00000596163 C12orf42Q96LP6 360 aa20.55■□□□□ 0.88
SHKBP1-212ENST00000596163 EMILIN3Q9NT22 766 aa20.55■□□□□ 0.88
SHKBP1-212ENST00000596163 ANAPC4Q9UJX5 808 aa20.55■□□□□ 0.88
SHKBP1-212ENST00000596163 ZMYM6O95789 1325 aa20.54■□□□□ 0.88
SHKBP1-212ENST00000596163 FOXP2O15409 715 aa20.54■□□□□ 0.88
SHKBP1-212ENST00000596163 RASA1P20936 1047 aa20.54■□□□□ 0.88
SHKBP1-212ENST00000596163 IRX3P78415 501 aaPredicted RBP20.54■□□□□ 0.88
SHKBP1-212ENST00000596163 ACER1Q8TDN7 264 aa20.54■□□□□ 0.88
SHKBP1-212ENST00000596163 PPP4R2Q9NY27 417 aa20.54■□□□□ 0.88
SHKBP1-212ENST00000596163 CPA4Q9UI42 421 aa20.54■□□□□ 0.88
SHKBP1-212ENST00000596163 GCLCP48506 637 aaPredicted RBP20.53■□□□□ 0.88
SHKBP1-212ENST00000596163 ZYXQ15942 572 aaKnown RBP20.53■□□□□ 0.88
SHKBP1-212ENST00000596163 BAZ2AQ9UIF9 1905 aaKnown RBP20.53■□□□□ 0.88
SHKBP1-212ENST00000596163 ATAD5Q96QE3 1844 aa20.53■□□□□ 0.88
SHKBP1-212ENST00000596163 RAD50Q92878 1312 aa20.53■□□□□ 0.88
SHKBP1-212ENST00000596163 USP17L15C9J2P7 530 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 USP17L13C9JLJ4 530 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 USP17L11C9JVI0 530 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 USP17L18D6R9N7 530 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 USP17L22D6RA61 530 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 USP17L17D6RBQ6 530 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 USP17L19D6RCP7 530 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 USP17L20D6RJB6 530 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 TSPY3P0CV98 308 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 TSPY8P0CW00 308 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 CHMLP26374 656 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 ATP2B2Q01814 1243 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 USP17L24Q0WX57 530 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 PPP4R3BQ5MIZ7 849 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 CD99L2Q8TCZ2 262 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 GTF3C2Q8WUA4 911 aaPredicted RBP20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 DSCC1Q9BVC3 393 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 MCOLN1Q9GZU1 580 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 ASCC2Q9H1I8 757 aaPredicted RBP20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 EFCC1Q9HA90 598 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 CTNNA3Q9UI47 895 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 TMX2Q9Y320 296 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 PHIPQ8WWQ0 1821 aa20.52■□□□□ 0.88
SHKBP1-212ENST00000596163 ADGRA2Q96PE1 1338 aa20.52■□□□□ 0.87
SHKBP1-212ENST00000596163 PRDM1O75626 825 aa20.51■□□□□ 0.87
SHKBP1-212ENST00000596163 LPAR1Q92633 364 aa20.51■□□□□ 0.87
SHKBP1-212ENST00000596163 CASP8AP2Q9UKL3 1982 aa20.5■□□□□ 0.87
SHKBP1-212ENST00000596163 A0A1W2PRG0 241 aa20.5■□□□□ 0.87
SHKBP1-212ENST00000596163 ZNF213O14771 459 aa20.5■□□□□ 0.87
SHKBP1-212ENST00000596163 GNRH1P01148 92 aa20.5■□□□□ 0.87
SHKBP1-212ENST00000596163 BCRP11274 1271 aa20.5■□□□□ 0.87
SHKBP1-212ENST00000596163 PCP11498 1178 aaKnown RBP20.5■□□□□ 0.87
SHKBP1-212ENST00000596163 EEF2P13639 858 aaKnown RBP20.5■□□□□ 0.87
SHKBP1-212ENST00000596163 LACTBP83111 547 aaPredicted RBP20.5■□□□□ 0.87
SHKBP1-212ENST00000596163 CTDSPL2Q05D32 466 aa20.5■□□□□ 0.87
SHKBP1-212ENST00000596163 BMP2KLQ5H9B9 411 aa20.5■□□□□ 0.87
SHKBP1-212ENST00000596163 NEDD1Q8NHV4 660 aa20.5■□□□□ 0.87
SHKBP1-212ENST00000596163 NYAP2Q9P242 653 aa20.5■□□□□ 0.87
SHKBP1-212ENST00000596163 TRIM17Q9Y577 477 aa20.5■□□□□ 0.87
SHKBP1-212ENST00000596163 VCAM1P19320 739 aa20.49■□□□□ 0.87
SHKBP1-212ENST00000596163 TFAP4Q01664 338 aa20.49■□□□□ 0.87
SHKBP1-212ENST00000596163 SIAH1Q8IUQ4 282 aa20.49■□□□□ 0.87
SHKBP1-212ENST00000596163 P2RX7Q99572 595 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-212ENST00000596163 RNF41Q9H4P4 317 aaPredicted RBP20.49■□□□□ 0.87
SHKBP1-212ENST00000596163 GOPCQ9HD26 462 aa20.49■□□□□ 0.87
SHKBP1-212ENST00000596163 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.49■□□□□ 0.87
SHKBP1-212ENST00000596163 TSPY2A6NKD2 308 aa20.48■□□□□ 0.87
SHKBP1-212ENST00000596163 ORC4O43929 436 aa20.48■□□□□ 0.87
SHKBP1-212ENST00000596163 FGRP09769 529 aa20.48■□□□□ 0.87
SHKBP1-212ENST00000596163 HOXD10P28358 340 aa20.48■□□□□ 0.87
SHKBP1-212ENST00000596163 NT5C2P49902 561 aa20.48■□□□□ 0.87
SHKBP1-212ENST00000596163 CATSPERGQ6ZRH7 1159 aa20.48■□□□□ 0.87
SHKBP1-212ENST00000596163 OTOP1Q7RTM1 612 aa20.48■□□□□ 0.87
SHKBP1-212ENST00000596163 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.48■□□□□ 0.87
SHKBP1-212ENST00000596163 VCPKMTQ9H867 229 aa20.48■□□□□ 0.87
SHKBP1-212ENST00000596163 TOMM22Q9NS69 142 aa20.48■□□□□ 0.87
SHKBP1-212ENST00000596163 RANBP6O60518 1105 aaKnown RBP20.47■□□□□ 0.87
SHKBP1-212ENST00000596163 FMNL1O95466 1100 aaPredicted RBP20.47■□□□□ 0.87
SHKBP1-212ENST00000596163 PRMT2P55345 433 aa20.47■□□□□ 0.87
SHKBP1-212ENST00000596163 HERVK_113P62684 666 aa20.47■□□□□ 0.87
SHKBP1-212ENST00000596163 IMMTQ16891 758 aaKnown RBP20.47■□□□□ 0.87
SHKBP1-212ENST00000596163 FAM110CQ1W6H9 321 aa20.47■□□□□ 0.87
SHKBP1-212ENST00000596163 FBXO46Q6PJ61 603 aaPredicted RBP20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms