RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 TBC1D8O95759 1140 aa30.61■■■□□ 2.49
TRIM28-204ENST00000594806 PCP11498 1178 aaKnown RBP30.61■■■□□ 2.49
TRIM28-204ENST00000594806 HMGCS2P54868 508 aa30.61■■■□□ 2.49
TRIM28-204ENST00000594806 MTMR2Q13614 643 aa30.61■■■□□ 2.49
TRIM28-204ENST00000594806 GPAT2Q6NUI2 795 aa30.61■■■□□ 2.49
TRIM28-204ENST00000594806 USP17L2Q6R6M4 530 aa30.61■■■□□ 2.49
TRIM28-204ENST00000594806 KIAA1683Q9H0B3 1180 aa30.61■■■□□ 2.49
TRIM28-204ENST00000594806 TSKSQ9UJT2 592 aa30.61■■■□□ 2.49
TRIM28-204ENST00000594806 AGTPBP1Q9UPW5 1226 aa30.61■■■□□ 2.49
TRIM28-204ENST00000594806 LOC285556D6RIA3 1793 aa30.61■■■□□ 2.49
TRIM28-204ENST00000594806 PDHXO00330 501 aa30.6■■■□□ 2.49
TRIM28-204ENST00000594806 PABPC4Q13310 644 aaKnown RBP eCLIP30.6■■■□□ 2.49
TRIM28-204ENST00000594806 FGRP09769 529 aa30.59■■■□□ 2.49
TRIM28-204ENST00000594806 NT5C2P49902 561 aa30.59■■■□□ 2.49
TRIM28-204ENST00000594806 CRHR2Q13324 411 aa30.59■■■□□ 2.49
TRIM28-204ENST00000594806 STK11IPQ8N1F8 1099 aa30.59■■■□□ 2.49
TRIM28-204ENST00000594806 FEZ1Q99689 392 aa30.59■■■□□ 2.49
TRIM28-204ENST00000594806 SH2D4AQ9H788 454 aa30.59■■■□□ 2.49
TRIM28-204ENST00000594806 ARHGEF10LQ9HCE6 1279 aa30.59■■■□□ 2.49
TRIM28-204ENST00000594806 DDX52Q9Y2R4 599 aaKnown RBP eCLIP30.59■■■□□ 2.498e-9■□□□□ 9.2
TRIM28-204ENST00000594806 GREB1LQ9C091 1923 aaPredicted RBP30.58■■■□□ 2.49
TRIM28-204ENST00000594806 ICA1Q05084 483 aa30.58■■■□□ 2.49
TRIM28-204ENST00000594806 CASC1Q6TDU7 716 aa30.58■■■□□ 2.49
TRIM28-204ENST00000594806 C12orf42Q96LP6 360 aa30.58■■■□□ 2.49
TRIM28-204ENST00000594806 PARK7Q99497 189 aaKnown RBP30.58■■■□□ 2.49
TRIM28-204ENST00000594806 IL25Q9H293 177 aa30.58■■■□□ 2.49
TRIM28-204ENST00000594806 GPR25O00155 361 aa30.57■■■□□ 2.48
TRIM28-204ENST00000594806 ZNF213O14771 459 aa30.57■■■□□ 2.48
TRIM28-204ENST00000594806 ORC4O43929 436 aa30.57■■■□□ 2.48
TRIM28-204ENST00000594806 CTDSPL2Q05D32 466 aa30.57■■■□□ 2.48
TRIM28-204ENST00000594806 RNF41Q9H4P4 317 aaPredicted RBP30.57■■■□□ 2.48
TRIM28-204ENST00000594806 PNMA3Q9UL41 463 aa30.57■■■□□ 2.48
TRIM28-204ENST00000594806 IMMTQ16891 758 aaKnown RBP30.56■■■□□ 2.48
TRIM28-204ENST00000594806 PPP4R3BQ5MIZ7 849 aa30.56■■■□□ 2.48
TRIM28-204ENST00000594806 PLIN4Q96Q06 1357 aa30.55■■■□□ 2.48
TRIM28-204ENST00000594806 LAMA4Q16363 1823 aa30.55■■■□□ 2.48
TRIM28-204ENST00000594806 TLR2O60603 784 aa30.55■■■□□ 2.48
TRIM28-204ENST00000594806 PRDM1O75626 825 aa30.55■■■□□ 2.48
TRIM28-204ENST00000594806 TSPY3P0CV98 308 aa30.55■■■□□ 2.48
TRIM28-204ENST00000594806 TSPY8P0CW00 308 aa30.55■■■□□ 2.48
TRIM28-204ENST00000594806 NEDD1Q8NHV4 660 aa30.55■■■□□ 2.48
TRIM28-204ENST00000594806 ACER1Q8TDN7 264 aa30.55■■■□□ 2.48
TRIM28-204ENST00000594806 CASP8AP2Q9UKL3 1982 aa30.54■■■□□ 2.48
TRIM28-204ENST00000594806 CDC45O75419 566 aa30.54■■■□□ 2.48
TRIM28-204ENST00000594806 HOXA7P31268 230 aaPredicted RBP30.54■■■□□ 2.48
TRIM28-204ENST00000594806 AKNAD1Q5T1N1 836 aa30.54■■■□□ 2.48
TRIM28-204ENST00000594806 MFSD6Q6ZSS7 791 aa30.54■■■□□ 2.48
TRIM28-204ENST00000594806 KIAA1211Q6ZU35 1233 aa30.54■■■□□ 2.48
TRIM28-204ENST00000594806 STAG1Q8WVM7 1258 aa30.54■■■□□ 2.48
TRIM28-204ENST00000594806 ESYT1Q9BSJ8 1104 aa30.54■■■□□ 2.48
TRIM28-204ENST00000594806 GNL3Q9BVP2 549 aaKnown RBP eCLIP30.54■■■□□ 2.48
TRIM28-204ENST00000594806 EMILIN3Q9NT22 766 aa30.54■■■□□ 2.48
TRIM28-204ENST00000594806 TMX2Q9Y320 296 aa30.54■■■□□ 2.48
TRIM28-204ENST00000594806 OSBPP22059 807 aa30.53■■■□□ 2.48
TRIM28-204ENST00000594806 TREML2Q5T2D2 321 aa30.53■■■□□ 2.48
TRIM28-204ENST00000594806 R3HDMLQ9H3Y0 253 aa30.53■■■□□ 2.48
TRIM28-204ENST00000594806 NYAP2Q9P242 653 aa30.53■■■□□ 2.48
TRIM28-204ENST00000594806 U3KPZ7 1027 aaPredicted RBP30.53■■■□□ 2.48
TRIM28-204ENST00000594806 IGKV6D-41A0A0C4DH26 115 aa30.52■■■□□ 2.48
TRIM28-204ENST00000594806 FKTNO75072 461 aa30.52■■■□□ 2.48
TRIM28-204ENST00000594806 EEF2P13639 858 aaKnown RBP30.52■■■□□ 2.48
TRIM28-204ENST00000594806 HAND2P61296 217 aa30.52■■■□□ 2.48
TRIM28-204ENST00000594806 TFAP4Q01664 338 aa30.52■■■□□ 2.48
TRIM28-204ENST00000594806 SIAH1Q8IUQ4 282 aa30.52■■■□□ 2.48
TRIM28-204ENST00000594806 SYNPO2Q9UMS6 1093 aa30.52■■■□□ 2.48
TRIM28-204ENST00000594806 A0A1W2PRG0 241 aa30.51■■■□□ 2.47
TRIM28-204ENST00000594806 TSPY2A6NKD2 308 aa30.51■■■□□ 2.47
TRIM28-204ENST00000594806 LPAR1Q92633 364 aa30.51■■■□□ 2.47
TRIM28-204ENST00000594806 ZNF296Q8WUU4 475 aaPredicted RBP30.5■■■□□ 2.47
TRIM28-204ENST00000594806 MAP4K1Q92918 833 aa30.5■■■□□ 2.47
TRIM28-204ENST00000594806 MTMR4Q9NYA4 1195 aa30.5■■■□□ 2.47
TRIM28-204ENST00000594806 RANBP6O60518 1105 aaKnown RBP30.49■■■□□ 2.47
TRIM28-204ENST00000594806 PTH1RQ03431 593 aa30.49■■■□□ 2.47
TRIM28-204ENST00000594806 ZYXQ15942 572 aaKnown RBP30.49■■■□□ 2.47
TRIM28-204ENST00000594806 MKL1Q969V6 931 aa30.49■■■□□ 2.47
TRIM28-204ENST00000594806 VCPKMTQ9H867 229 aa30.49■■■□□ 2.47
TRIM28-204ENST00000594806 TOMM22Q9NS69 142 aa30.49■■■□□ 2.47
TRIM28-204ENST00000594806 ADGRA2Q96PE1 1338 aa30.48■■■□□ 2.47
TRIM28-204ENST00000594806 TTLL1O95922 423 aa30.48■■■□□ 2.47
TRIM28-204ENST00000594806 IRX3P78415 501 aaPredicted RBP30.48■■■□□ 2.47
TRIM28-204ENST00000594806 SP3Q02447 781 aa30.48■■■□□ 2.47
TRIM28-204ENST00000594806 FAM47AQ5JRC9 791 aa30.48■■■□□ 2.47
TRIM28-204ENST00000594806 C17orf99Q6UX52 265 aa30.48■■■□□ 2.47
TRIM28-204ENST00000594806 SMCR8Q8TEV9 937 aaPredicted RBP30.48■■■□□ 2.47
TRIM28-204ENST00000594806 NBPF3Q9H094 633 aa30.48■■■□□ 2.47
TRIM28-204ENST00000594806 GOPCQ9HD26 462 aa30.48■■■□□ 2.47
TRIM28-204ENST00000594806 INCENPQ9NQS7 918 aa30.48■■■□□ 2.47
TRIM28-204ENST00000594806 TACC3Q9Y6A5 838 aa30.48■■■□□ 2.47
TRIM28-204ENST00000594806 MYH4Q9Y623 1939 aa30.47■■■□□ 2.47
TRIM28-204ENST00000594806 USP17L15C9J2P7 530 aa30.47■■■□□ 2.47
TRIM28-204ENST00000594806 USP17L13C9JLJ4 530 aa30.47■■■□□ 2.47
TRIM28-204ENST00000594806 USP17L11C9JVI0 530 aa30.47■■■□□ 2.47
TRIM28-204ENST00000594806 USP17L18D6R9N7 530 aa30.47■■■□□ 2.47
TRIM28-204ENST00000594806 USP17L22D6RA61 530 aa30.47■■■□□ 2.47
TRIM28-204ENST00000594806 USP17L17D6RBQ6 530 aa30.47■■■□□ 2.47
TRIM28-204ENST00000594806 USP17L19D6RCP7 530 aa30.47■■■□□ 2.47
TRIM28-204ENST00000594806 USP17L20D6RJB6 530 aa30.47■■■□□ 2.47
TRIM28-204ENST00000594806 CYP2C8P10632 490 aa30.47■■■□□ 2.47
TRIM28-204ENST00000594806 VCAM1P19320 739 aa30.47■■■□□ 2.47
TRIM28-204ENST00000594806 GCLCP48506 637 aaPredicted RBP30.47■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms