RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 USP17L15C9J2P7 530 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 USP17L13C9JLJ4 530 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 USP17L11C9JVI0 530 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 USP17L18D6R9N7 530 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 USP17L22D6RA61 530 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 USP17L17D6RBQ6 530 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 USP17L19D6RCP7 530 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 USP17L20D6RJB6 530 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 ZKSCAN1P17029 563 aaPredicted RBP21.28■■□□□ 1
SHKBP1-203ENST00000594298 RGS2P41220 211 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 USP17L24Q0WX57 530 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 CERKLQ49MI3 558 aaPredicted RBP21.28■■□□□ 1
SHKBP1-203ENST00000594298 PLEKHH3Q7Z736 793 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 CCAR1Q8IX12 1150 aaKnown RBP21.28■■□□□ 1
SHKBP1-203ENST00000594298 FEZ1Q99689 392 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 PAGR1Q9BTK6 254 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 STAP2Q9UGK3 403 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 EXOC6BQ9Y2D4 811 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 RABGAP1Q9Y3P9 1069 aa21.28■■□□□ 1
SHKBP1-203ENST00000594298 MYO5AQ9Y4I1 1855 aaKnown RBP21.27■■□□□ 1
SHKBP1-203ENST00000594298 BMP8BP34820 402 aa21.27■■□□□ 1
SHKBP1-203ENST00000594298 TTF1Q15361 905 aaPredicted RBP21.27■■□□□ 1
SHKBP1-203ENST00000594298 ABCB5Q2M3G0 1257 aa21.27■■□□□ 1
SHKBP1-203ENST00000594298 CATSPERGQ6ZRH7 1159 aa21.27■■□□□ 1
SHKBP1-203ENST00000594298 APBA2Q99767 749 aa21.27■■□□□ 1
SHKBP1-203ENST00000594298 GDF15Q99988 308 aa21.27■■□□□ 1
SHKBP1-203ENST00000594298 SZT2Q5T011 3432 aa21.27■■□□□ 1
SHKBP1-203ENST00000594298 CNMDO75829 334 aa21.26■□□□□ 0.99
SHKBP1-203ENST00000594298 CCNA1P78396 465 aa21.26■□□□□ 0.99
SHKBP1-203ENST00000594298 CACNB2Q08289 660 aaPredicted RBP21.26■□□□□ 0.99
SHKBP1-203ENST00000594298 RAB3GAP1Q15042 981 aa21.26■□□□□ 0.99
SHKBP1-203ENST00000594298 ZYXQ15942 572 aaKnown RBP21.26■□□□□ 0.99
SHKBP1-203ENST00000594298 LBX2Q6XYB7 198 aa21.26■□□□□ 0.99
SHKBP1-203ENST00000594298 C7orf61Q8IZ16 206 aa21.26■□□□□ 0.99
SHKBP1-203ENST00000594298 RAB11FIP3O75154 756 aa21.25■□□□□ 0.99
SHKBP1-203ENST00000594298 VCAM1P19320 739 aa21.25■□□□□ 0.99
SHKBP1-203ENST00000594298 SHMT1P34896 483 aa21.25■□□□□ 0.99
SHKBP1-203ENST00000594298 PLCD1P51178 756 aa21.25■□□□□ 0.99
SHKBP1-203ENST00000594298 GABPAQ06546 454 aa21.25■□□□□ 0.99
SHKBP1-203ENST00000594298 SIRT2Q8IXJ6 389 aa21.25■□□□□ 0.99
SHKBP1-203ENST00000594298 RHPN1Q8TCX5 695 aa21.25■□□□□ 0.99
SHKBP1-203ENST00000594298 CABP5Q9NP86 173 aa21.25■□□□□ 0.99
SHKBP1-203ENST00000594298 MAGEB6P1A0A0J9YX57 407 aa21.24■□□□□ 0.99
SHKBP1-203ENST00000594298 GLRX3O76003 335 aaKnown RBP21.24■□□□□ 0.99
SHKBP1-203ENST00000594298 MAP2K5Q13163 448 aa21.24■□□□□ 0.99
SHKBP1-203ENST00000594298 CCL14Q16627 93 aa21.24■□□□□ 0.99
SHKBP1-203ENST00000594298 LHX8Q68G74 356 aa21.24■□□□□ 0.99
SHKBP1-203ENST00000594298 ACER1Q8TDN7 264 aa21.24■□□□□ 0.99
SHKBP1-203ENST00000594298 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.24■□□□□ 0.99
SHKBP1-203ENST00000594298 KIF1BPQ96EK5 621 aa21.24■□□□□ 0.99
SHKBP1-203ENST00000594298 IL1RAPL2Q9NP60 686 aa21.24■□□□□ 0.99
SHKBP1-203ENST00000594298 PFASO15067 1338 aa21.24■□□□□ 0.99
SHKBP1-203ENST00000594298 COL6A1P12109 1028 aa21.23■□□□□ 0.99
SHKBP1-203ENST00000594298 GUCY1A2P33402 732 aa21.23■□□□□ 0.99
SHKBP1-203ENST00000594298 SLC9C2Q5TAH2 1124 aa21.23■□□□□ 0.99
SHKBP1-203ENST00000594298 EDC3Q96F86 508 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-203ENST00000594298 ALPK3Q96L96 1907 aa21.23■□□□□ 0.99
SHKBP1-203ENST00000594298 DDX60LQ5H9U9 1706 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-203ENST00000594298 MYH1P12882 1939 aa21.22■□□□□ 0.99
SHKBP1-203ENST00000594298 SLC15A5A6NIM6 579 aa21.22■□□□□ 0.99
SHKBP1-203ENST00000594298 SOX1O00570 391 aaPredicted RBP21.22■□□□□ 0.99
SHKBP1-203ENST00000594298 POLR3DP05423 398 aaPredicted RBP21.22■□□□□ 0.99
SHKBP1-203ENST00000594298 PDE6AP16499 860 aa21.22■□□□□ 0.99
SHKBP1-203ENST00000594298 CCND3P30281 292 aaPredicted RBP21.22■□□□□ 0.99
SHKBP1-203ENST00000594298 AAMPQ13685 434 aa21.22■□□□□ 0.99
SHKBP1-203ENST00000594298 CLASRPQ8N2M8 674 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-203ENST00000594298 CRNKL1Q9BZJ0 848 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-203ENST00000594298 CWC22Q9HCG8 908 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-203ENST00000594298 ZMYND8Q9ULU4 1186 aaPredicted RBP21.22■□□□□ 0.99
SHKBP1-203ENST00000594298 HOXC6P09630 235 aa21.21■□□□□ 0.99
SHKBP1-203ENST00000594298 PTPREP23469 700 aa21.21■□□□□ 0.99
SHKBP1-203ENST00000594298 RPAP3Q9H6T3 665 aaPredicted RBP21.21■□□□□ 0.99
SHKBP1-203ENST00000594298 BTBD7Q9P203 1132 aa21.21■□□□□ 0.99
SHKBP1-203ENST00000594298 TCRBV5S4A2TA0A5A2 114 aa21.2■□□□□ 0.98
SHKBP1-203ENST00000594298 SPDYE16A6NNV3 312 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-203ENST00000594298 GRB14Q14449 540 aa21.2■□□□□ 0.98
SHKBP1-203ENST00000594298 SEPT2Q15019 361 aa21.2■□□□□ 0.98
SHKBP1-203ENST00000594298 CRBNQ96SW2 442 aa21.2■□□□□ 0.98
SHKBP1-203ENST00000594298 MCM9Q9NXL9 1143 aa21.2■□□□□ 0.98
SHKBP1-203ENST00000594298 MFSD14CQ5VZR4 134 aa21.19■□□□□ 0.98
SHKBP1-203ENST00000594298 GPR153Q6NV75 609 aa21.19■□□□□ 0.98
SHKBP1-203ENST00000594298 LRCH3Q96II8 777 aa21.19■□□□□ 0.98
SHKBP1-203ENST00000594298 DCP1AQ9NPI6 582 aaPredicted RBP21.19■□□□□ 0.98
SHKBP1-203ENST00000594298 FLRT1Q9NZU1 646 aa21.19■□□□□ 0.98
SHKBP1-203ENST00000594298 ZNF532Q9HCE3 1301 aa21.19■□□□□ 0.98
SHKBP1-203ENST00000594298 A0A1W2PRG0 241 aa21.18■□□□□ 0.98
SHKBP1-203ENST00000594298 APBB1O00213 710 aa21.18■□□□□ 0.98
SHKBP1-203ENST00000594298 IFIT2P09913 472 aaKnown RBP21.18■□□□□ 0.98
SHKBP1-203ENST00000594298 SYN1P17600 705 aa21.18■□□□□ 0.98
SHKBP1-203ENST00000594298 MAGEA10P43363 369 aaPredicted RBP21.18■□□□□ 0.98
SHKBP1-203ENST00000594298 IVNS1ABPQ9Y6Y0 642 aa21.18■□□□□ 0.98
SHKBP1-203ENST00000594298 GOLIM4O00461 696 aa21.17■□□□□ 0.98
SHKBP1-203ENST00000594298 IGHA2P01877 340 aa21.17■□□□□ 0.98
SHKBP1-203ENST00000594298 EVX2Q03828 476 aa21.17■□□□□ 0.98
SHKBP1-203ENST00000594298 COG2Q14746 738 aa21.17■□□□□ 0.98
SHKBP1-203ENST00000594298 LRIT3Q3SXY7 679 aa21.17■□□□□ 0.98
SHKBP1-203ENST00000594298 WDR78Q5VTH9 848 aa21.17■□□□□ 0.98
SHKBP1-203ENST00000594298 LCORLQ8N3X6 602 aa21.17■□□□□ 0.98
SHKBP1-203ENST00000594298 SDR42E1Q8WUS8 393 aa21.17■□□□□ 0.98
SHKBP1-203ENST00000594298 DNAJC2Q99543 621 aaKnown RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms