RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 STX8Q9UNK0 236 aa35.75■■■■□ 3.31
CTCF-203ENST00000566078 RCAN1P53805 252 aa35.74■■■■□ 3.31
CTCF-203ENST00000566078 NUP133Q8WUM0 1156 aa35.74■■■■□ 3.31
CTCF-203ENST00000566078 DHX16O60231 1041 aaKnown RBP35.73■■■■□ 3.31
CTCF-203ENST00000566078 JAK2O60674 1132 aa35.73■■■■□ 3.31
CTCF-203ENST00000566078 CTDNEP1O95476 244 aa35.73■■■■□ 3.31
CTCF-203ENST00000566078 NSUN7Q8NE18 718 aaKnown RBP35.73■■■■□ 3.31
CTCF-203ENST00000566078 TEPSINQ96N21 525 aa35.73■■■■□ 3.31
CTCF-203ENST00000566078 DEFB129Q9H1M3 183 aa35.73■■■■□ 3.31
CTCF-203ENST00000566078 IGKV6D-41A0A0C4DH26 115 aa35.72■■■■□ 3.31
CTCF-203ENST00000566078 DDAH1O94760 285 aa35.72■■■■□ 3.31
CTCF-203ENST00000566078 CPLX1O14810 134 aa35.71■■■■□ 3.31
CTCF-203ENST00000566078 CDC27P30260 824 aa35.71■■■■□ 3.31
CTCF-203ENST00000566078 RTN1Q16799 776 aa35.71■■■■□ 3.31
CTCF-203ENST00000566078 SMARCC2Q8TAQ2 1214 aa35.71■■■■□ 3.31
CTCF-203ENST00000566078 PTPDC1A2A3K4 754 aa35.7■■■■□ 3.31
CTCF-203ENST00000566078 TBC1D12O60347 775 aa35.7■■■■□ 3.31
CTCF-203ENST00000566078 GDF11O95390 407 aa35.7■■■■□ 3.31
CTCF-203ENST00000566078 PNMA1Q8ND90 353 aa35.7■■■■□ 3.31
CTCF-203ENST00000566078 TMEM47Q9BQJ4 181 aa35.7■■■■□ 3.31
CTCF-203ENST00000566078 CALM1P0DP23 149 aa35.69■■■■□ 3.3
CTCF-203ENST00000566078 CALM2P0DP24 149 aa35.69■■■■□ 3.3
CTCF-203ENST00000566078 CALM3P0DP25 149 aa35.69■■■■□ 3.3
CTCF-203ENST00000566078 ADD1P35611 737 aaKnown RBP35.69■■■■□ 3.3
CTCF-203ENST00000566078 TROAPQ12815 778 aa35.69■■■■□ 3.3
CTCF-203ENST00000566078 MTMR4Q9NYA4 1195 aa35.69■■■■□ 3.3
CTCF-203ENST00000566078 NOVP48745 357 aa35.68■■■■□ 3.3
CTCF-203ENST00000566078 ABCB5Q2M3G0 1257 aa35.68■■■■□ 3.3
CTCF-203ENST00000566078 SHROOM1Q2M3G4 852 aaPredicted RBP35.68■■■■□ 3.3
CTCF-203ENST00000566078 MIGA2Q7L4E1 593 aa35.68■■■■□ 3.3
CTCF-203ENST00000566078 CLEC10AQ8IUN9 316 aa35.68■■■■□ 3.3
CTCF-203ENST00000566078 DDX11Q96FC9 970 aa35.68■■■■□ 3.3
CTCF-203ENST00000566078 FAM217BQ9NTX9 383 aaPredicted RBP35.68■■■■□ 3.3
CTCF-203ENST00000566078 PITPNM2Q9BZ72 1349 aa35.68■■■■□ 3.3
CTCF-203ENST00000566078 FANCBQ8NB91 859 aa35.68■■■■□ 3.3
CTCF-203ENST00000566078 RRP1BQ14684 758 aaKnown RBP35.67■■■■□ 3.3
CTCF-203ENST00000566078 TOP1P11387 765 aaKnown RBP35.66■■■■□ 3.3
CTCF-203ENST00000566078 EPHX2P34913 555 aa35.66■■■■□ 3.3
CTCF-203ENST00000566078 HMGN5P82970 282 aaKnown RBP35.66■■■■□ 3.3
CTCF-203ENST00000566078 CPLX2Q6PUV4 134 aaKnown RBP35.66■■■■□ 3.3
CTCF-203ENST00000566078 TMEM179Q6ZVK1 233 aa35.66■■■■□ 3.3
CTCF-203ENST00000566078 DOCK1Q14185 1865 aa35.66■■■■□ 3.3
CTCF-203ENST00000566078 CDKL5O76039 1030 aa35.65■■■■□ 3.3
CTCF-203ENST00000566078 NUCB2P80303 420 aa35.65■■■■□ 3.3
CTCF-203ENST00000566078 PKP1Q13835 747 aa35.65■■■■□ 3.3
CTCF-203ENST00000566078 PPP2R3BQ9Y5P8 575 aa35.65■■■■□ 3.3
CTCF-203ENST00000566078 CCDC196A0A1B0GTZ2 297 aa35.65■■■■□ 3.3
CTCF-203ENST00000566078 PPFIA3O75145 1194 aa35.65■■■■□ 3.3
CTCF-203ENST00000566078 TTLL1O95922 423 aa35.65■■■■□ 3.3
CTCF-203ENST00000566078 MAP3K10Q02779 954 aa35.65■■■■□ 3.3
CTCF-203ENST00000566078 PPP4R3BQ5MIZ7 849 aa35.65■■■■□ 3.3
CTCF-203ENST00000566078 USP50Q70EL3 339 aaPredicted RBP35.65■■■■□ 3.3
CTCF-203ENST00000566078 PPP2R5BQ15173 497 aa35.64■■■■□ 3.3
CTCF-203ENST00000566078 CTCFLQ8NI51 663 aaPredicted RBP35.64■■■■□ 3.3
CTCF-203ENST00000566078 CABP5Q9NP86 173 aa35.64■■■■□ 3.3
CTCF-203ENST00000566078 GH2P01242 217 aa35.63■■■■□ 3.29
CTCF-203ENST00000566078 SEPT2Q15019 361 aa35.63■■■■□ 3.29
CTCF-203ENST00000566078 NBPF12Q5TAG4 269 aaPredicted RBP35.63■■■■□ 3.29
CTCF-203ENST00000566078 FAM184AQ8NB25 1140 aa35.63■■■■□ 3.29
CTCF-203ENST00000566078 RBM28Q9NW13 759 aaKnown RBP35.63■■■■□ 3.29
CTCF-203ENST00000566078 IQCA1LA6NCM1 817 aa35.62■■■■□ 3.29
CTCF-203ENST00000566078 NTRK3Q16288 839 aa35.62■■■■□ 3.29
CTCF-203ENST00000566078 CLIP2Q9UDT6 1046 aa35.62■■■■□ 3.29
CTCF-203ENST00000566078 SYT1P21579 422 aa35.61■■■■□ 3.29
CTCF-203ENST00000566078 GUCY1A2P33402 732 aa35.61■■■■□ 3.29
CTCF-203ENST00000566078 JAG1P78504 1218 aa35.61■■■■□ 3.29
CTCF-203ENST00000566078 ATP2B2Q01814 1243 aa35.61■■■■□ 3.29
CTCF-203ENST00000566078 RAB3GAP1Q15042 981 aa35.61■■■■□ 3.29
CTCF-203ENST00000566078 LRRC47Q8N1G4 583 aaKnown RBP35.61■■■■□ 3.29
CTCF-203ENST00000566078 DCPSQ96C86 337 aaKnown RBP35.61■■■■□ 3.29
CTCF-203ENST00000566078 KANSL2Q9H9L4 492 aa35.61■■■■□ 3.29
CTCF-203ENST00000566078 MTMR7Q9Y216 660 aa35.61■■■■□ 3.29
CTCF-203ENST00000566078 ICA1Q05084 483 aa35.6■■■■□ 3.29
CTCF-203ENST00000566078 PRAMEF18Q5VWM3 479 aa35.6■■■■□ 3.29
CTCF-203ENST00000566078 PHKBQ93100 1093 aa35.6■■■■□ 3.29
CTCF-203ENST00000566078 HOOK2Q96ED9 719 aa35.6■■■■□ 3.29
CTCF-203ENST00000566078 MAP3K14Q99558 947 aa35.6■■■■□ 3.29
CTCF-203ENST00000566078 KIF3AQ9Y496 699 aa35.6■■■■□ 3.29
CTCF-203ENST00000566078 DCAF8L1A6NGE4 600 aa35.59■■■■□ 3.29
CTCF-203ENST00000566078 IFNAR1P17181 557 aa35.59■■■■□ 3.29
CTCF-203ENST00000566078 PDCP20941 246 aa35.59■■■■□ 3.29
CTCF-203ENST00000566078 GRM4Q14833 912 aa35.59■■■■□ 3.29
CTCF-203ENST00000566078 LARP1BQ659C4 914 aaKnown RBP35.59■■■■□ 3.29
CTCF-203ENST00000566078 TAF1DQ9H5J8 278 aaPredicted RBP35.59■■■■□ 3.29
CTCF-203ENST00000566078 ORC3Q9UBD5 711 aaPredicted RBP35.59■■■■□ 3.29
CTCF-203ENST00000566078 STX6O43752 255 aa35.58■■■■□ 3.29
CTCF-203ENST00000566078 FDPSP14324 419 aaKnown RBP35.58■■■■□ 3.29
CTCF-203ENST00000566078 KIF5BP33176 963 aa35.58■■■■□ 3.29
CTCF-203ENST00000566078 DCAF15Q66K64 600 aa35.58■■■■□ 3.29
CTCF-203ENST00000566078 ZBTB21Q9ULJ3 1066 aa35.58■■■■□ 3.29
CTCF-203ENST00000566078 SSC5DA1L4H1 1573 aa35.58■■■■□ 3.29
CTCF-203ENST00000566078 BAZ2BQ9UIF8 2168 aaKnown RBP35.58■■■■□ 3.29
CTCF-203ENST00000566078 POTECB2RU33 542 aa35.57■■■■□ 3.29
CTCF-203ENST00000566078 PLEKHA8P1O95397 391 aa35.57■■■■□ 3.29
CTCF-203ENST00000566078 EEF2P13639 858 aaKnown RBP35.57■■■■□ 3.29
CTCF-203ENST00000566078 CMTR1Q8N1G2 835 aaKnown RBP35.57■■■■□ 3.29
CTCF-203ENST00000566078 NYAP2Q9P242 653 aa35.57■■■■□ 3.29
CTCF-203ENST00000566078 ZDHHC9Q9Y397 364 aa35.57■■■■□ 3.29
CTCF-203ENST00000566078 CAP2P40123 477 aa35.57■■■■□ 3.28
CTCF-203ENST00000566078 TMTC3Q6ZXV5 915 aa35.57■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 191.3 ms