RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 GNAT2P19087 354 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 HMGCS2P54868 508 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 HAND2P61296 217 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 SNAPC2Q13487 334 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 MTMR2Q13614 643 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 SH3D19Q5HYK7 790 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 FAM47AQ5JRC9 791 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 TICAM2Q86XR7 235 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 ABHD8Q96I13 439 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 CFHR5Q9BXR6 569 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 PICK1Q9NRD5 415 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 SAGE1Q9NXZ1 904 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 ANAPC4Q9UJX5 808 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 MYH4Q9Y623 1939 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 PDHXO00330 501 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 NMT2O60551 498 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 ASNSP08243 561 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 CETPP11597 493 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 CTCFP49711 727 aaPredicted RBP11.01□□□□□ -0.65
VPS35-206ENST00000565228 SREBF2Q12772 1141 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 RAB3GAP1Q15042 981 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 ZYXQ15942 572 aaKnown RBP11.01□□□□□ -0.65
VPS35-206ENST00000565228 BMP2KLQ5H9B9 411 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 ERICH6BQ5W0A0 696 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 RASGRP2Q7LDG7 609 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 ARHGAP39Q9C0H5 1083 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 NAPBQ9H115 298 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 IL17RBQ9NRM6 502 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 DIAPH3Q9NSV4 1193 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 SWAP70Q9UH65 585 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 NEDD4P46934 1319 aa11.01□□□□□ -0.65
VPS35-206ENST00000565228 GPR25O00155 361 aa11□□□□□ -0.65
VPS35-206ENST00000565228 CA12O43570 354 aa11□□□□□ -0.65
VPS35-206ENST00000565228 BACE1P56817 501 aa11□□□□□ -0.65
VPS35-206ENST00000565228 MLLT1Q03111 559 aaPredicted RBP11□□□□□ -0.65
VPS35-206ENST00000565228 LRRFIP1Q32MZ4 808 aaKnown RBP11□□□□□ -0.65
VPS35-206ENST00000565228 GADL1Q6ZQY3 521 aa11□□□□□ -0.65
VPS35-206ENST00000565228 STOX1Q6ZVD7 989 aa11□□□□□ -0.65
VPS35-206ENST00000565228 ANKRD23Q86SG2 305 aa11□□□□□ -0.65
VPS35-206ENST00000565228 ZNF296Q8WUU4 475 aaPredicted RBP11□□□□□ -0.65
VPS35-206ENST00000565228 LSG1Q9H089 658 aaKnown RBP11□□□□□ -0.65
VPS35-206ENST00000565228 ZMYM6O95789 1325 aa11□□□□□ -0.65
VPS35-206ENST00000565228 CENPFP49454 3210 aa10.99□□□□□ -0.65
VPS35-206ENST00000565228 MPHOSPH10O00566 681 aaKnown RBP10.99□□□□□ -0.65
VPS35-206ENST00000565228 EEF2P13639 858 aaKnown RBP10.99□□□□□ -0.65
VPS35-206ENST00000565228 INHBEP58166 350 aa10.99□□□□□ -0.65
VPS35-206ENST00000565228 C17orf99Q6UX52 265 aa10.99□□□□□ -0.65
VPS35-206ENST00000565228 REM2Q8IYK8 340 aaPredicted RBP10.99□□□□□ -0.65
VPS35-206ENST00000565228 ESYT1Q9BSJ8 1104 aa10.99□□□□□ -0.65
VPS35-206ENST00000565228 DSCC1Q9BVC3 393 aa10.99□□□□□ -0.65
VPS35-206ENST00000565228 TRIM34Q9BYJ4 488 aa10.99□□□□□ -0.65
VPS35-206ENST00000565228 CPA4Q9UI42 421 aa10.99□□□□□ -0.65
VPS35-206ENST00000565228 AGTPBP1Q9UPW5 1226 aa10.99□□□□□ -0.65
VPS35-206ENST00000565228 MGAMO43451 1857 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 SMCHD1A6NHR9 2005 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 USP17L10C9JJH3 530 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 CNMDO75829 334 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 ECM2O94769 699 aaPredicted RBP10.98□□□□□ -0.65
VPS35-206ENST00000565228 BCRP11274 1271 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 NOVP48745 357 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 TAF1CQ15572 869 aaPredicted RBP10.98□□□□□ -0.65
VPS35-206ENST00000565228 TMEM179Q6ZVK1 233 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 NEDD1Q8NHV4 660 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 CEP95Q96GE4 821 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 C12orf42Q96LP6 360 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 KIAA1683Q9H0B3 1180 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 TXNRD2Q9NNW7 524 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 GINM1Q9NU53 330 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 PLIN4Q96Q06 1357 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 PLXNB2O15031 1838 aa10.98□□□□□ -0.65
VPS35-206ENST00000565228 COL11A1P12107 1806 aaPredicted RBP10.98□□□□□ -0.65
VPS35-206ENST00000565228 HIP1O00291 1037 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 ORC4O43929 436 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 TLR2O60603 784 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 CYP21A2P08686 494 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 VCAM1P19320 739 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 TFAP4Q01664 338 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 RCSD1Q6JBY9 416 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 SPICE1Q8N0Z3 855 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 STAG1Q8WVM7 1258 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 MAP4K1Q92918 833 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 CCDC17Q96LX7 622 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 P2RX7Q99572 595 aaKnown RBP10.97□□□□□ -0.65
VPS35-206ENST00000565228 NACAP1Q9BZK3 213 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 ASCC2Q9H1I8 757 aaPredicted RBP10.97□□□□□ -0.65
VPS35-206ENST00000565228 TMX2Q9Y320 296 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 RAD50Q92878 1312 aa10.97□□□□□ -0.65
VPS35-206ENST00000565228 BRCA2P51587 3418 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 PDE4DIPQ5VU43 2346 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 A0A0G2JMZ2 1700 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 HOXA7P31268 230 aaPredicted RBP10.96□□□□□ -0.65
VPS35-206ENST00000565228 ICA1Q05084 483 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 Q3C1V9 767 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 AKNAD1Q5T1N1 836 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 USP17L2Q6R6M4 530 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 SAMD1Q6SPF0 538 aaPredicted RBP10.96□□□□□ -0.65
VPS35-206ENST00000565228 CYB5R4Q7L1T6 521 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 PROCA1Q8NCQ7 364 aaPredicted RBP10.96□□□□□ -0.65
VPS35-206ENST00000565228 CD99L2Q8TCZ2 262 aa10.96□□□□□ -0.65
VPS35-206ENST00000565228 CHMP4CQ96CF2 233 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms