RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 PAX7P23759 505 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 VSNL1P62760 191 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 FAM160A1Q05DH4 1040 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 TOGARAM2Q6ZUX3 1019 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 TMEM139Q8IV31 216 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 MSL3Q8N5Y2 521 aaKnown RBP15.09■□□□□ 0.01
CLK3-206ENST00000562078 AFAP1L1Q8TED9 768 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 SETDB2Q96T68 719 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 RHOXF2Q9BQY4 288 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 COL24A1Q17RW2 1714 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 ZFYP08048 801 aaPredicted RBP15.09■□□□□ 0.01
CLK3-206ENST00000562078 ADD1P35611 737 aaKnown RBP15.09■□□□□ 0.01
CLK3-206ENST00000562078 FOSBP53539 338 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 NCAPHQ15003 741 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 KARSQ15046 597 aaKnown RBP15.09■□□□□ 0.01
CLK3-206ENST00000562078 NAIF1Q69YI7 327 aaPredicted RBP15.09■□□□□ 0.01
CLK3-206ENST00000562078 SRGAP1Q7Z6B7 1085 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 FSIP1Q8NA03 581 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 RABEP2Q9H5N1 569 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 COL4A1P02462 1669 aa15.09■□□□□ 0.01
CLK3-206ENST00000562078 H3BQV1 296 aa15.08■□□□□ 0.01
CLK3-206ENST00000562078 PLSCR1O15162 318 aa15.08■□□□□ 0.01
CLK3-206ENST00000562078 CUTAO60888 179 aa15.08■□□□□ 0.01
CLK3-206ENST00000562078 NEBLO76041 1014 aa15.08■□□□□ 0.01
CLK3-206ENST00000562078 TFRCP02786 760 aaKnown RBP15.08■□□□□ 0.01
CLK3-206ENST00000562078 ADRA2BP18089 450 aa15.08■□□□□ 0.01
CLK3-206ENST00000562078 IFFO2Q5TF58 517 aa15.08■□□□□ 0.01
CLK3-206ENST00000562078 PROM2Q8N271 834 aa15.08■□□□□ 0.01
CLK3-206ENST00000562078 SDF4Q9BRK5 362 aa15.08■□□□□ 0.01
CLK3-206ENST00000562078 E7EWF7 191 aa15.08■□□□□ 0
CLK3-206ENST00000562078 FOXP2O15409 715 aa15.08■□□□□ 0
CLK3-206ENST00000562078 HMGB2P26583 209 aaKnown RBP15.08■□□□□ 0
CLK3-206ENST00000562078 ELF1P32519 619 aa15.08■□□□□ 0
CLK3-206ENST00000562078 PHKA1P46020 1223 aa15.08■□□□□ 0
CLK3-206ENST00000562078 TTC19Q6DKK2 380 aaPredicted RBP15.08■□□□□ 0
CLK3-206ENST00000562078 APPBP2Q92624 585 aa15.08■□□□□ 0
CLK3-206ENST00000562078 CD248Q9HCU0 757 aa15.08■□□□□ 0
CLK3-206ENST00000562078 SEC31BQ9NQW1 1179 aa15.08■□□□□ 0
CLK3-206ENST00000562078 HMGB1P09429 215 aaKnown RBP15.07■□□□□ 0
CLK3-206ENST00000562078 PUM3Q15397 648 aaKnown RBP15.07■□□□□ 0
CLK3-206ENST00000562078 ERFEQ4G0M1 354 aa15.07■□□□□ 0
CLK3-206ENST00000562078 DHX32Q7L7V1 743 aaKnown RBP15.07■□□□□ 0
CLK3-206ENST00000562078 MSANTD4Q8NCY6 345 aa15.07■□□□□ 0
CLK3-206ENST00000562078 PUS7LQ9H0K6 701 aaKnown RBP15.07■□□□□ 0
CLK3-206ENST00000562078 MROH5Q6ZUA9 1318 aa15.07■□□□□ 0
CLK3-206ENST00000562078 TMEM232C9JQI7 657 aa15.07■□□□□ 0
CLK3-206ENST00000562078 MYO1FO00160 1098 aa15.07■□□□□ 0
CLK3-206ENST00000562078 ARHGAP6O43182 974 aa15.07■□□□□ 0
CLK3-206ENST00000562078 SYF2O95926 243 aaKnown RBP15.07■□□□□ 0
CLK3-206ENST00000562078 CCDC102BQ68D86 513 aa15.07■□□□□ 0
CLK3-206ENST00000562078 FCHSD1Q86WN1 690 aa15.07■□□□□ 0
CLK3-206ENST00000562078 NBPF5PQ86XG9 351 aaPredicted RBP15.07■□□□□ 0
CLK3-206ENST00000562078 N4BP2L2Q92802 583 aaPredicted RBP15.07■□□□□ 0
CLK3-206ENST00000562078 DESI2Q9BSY9 194 aa15.07■□□□□ 0
CLK3-206ENST00000562078 NYXQ9GZU5 481 aa15.07■□□□□ 0
CLK3-206ENST00000562078 SNAP23O00161 211 aa15.06■□□□□ 0
CLK3-206ENST00000562078 HAND2P61296 217 aa15.06■□□□□ 0
CLK3-206ENST00000562078 PRPF38AQ8NAV1 312 aaKnown RBP15.06■□□□□ 0
CLK3-206ENST00000562078 TBC1D22AQ8WUA7 517 aa15.06■□□□□ 0
CLK3-206ENST00000562078 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.06■□□□□ 02e-6■■□□□ 12.6
CLK3-206ENST00000562078 HSD3B7Q9H2F3 369 aa15.06■□□□□ 0
CLK3-206ENST00000562078 MCM8Q9UJA3 840 aa15.06■□□□□ 0
CLK3-206ENST00000562078 RCOR1Q9UKL0 485 aa15.06■□□□□ 0
CLK3-206ENST00000562078 EBAG9O00559 213 aa15.06■□□□□ 0
CLK3-206ENST00000562078 PRPF6O94906 941 aaKnown RBP15.06■□□□□ 0
CLK3-206ENST00000562078 IBSPP21815 317 aaPredicted RBP15.06■□□□□ 0
CLK3-206ENST00000562078 INPP5BP32019 993 aa15.06■□□□□ 0
CLK3-206ENST00000562078 ME1P48163 572 aa15.06■□□□□ 0
CLK3-206ENST00000562078 UBASH3AP57075 661 aa15.06■□□□□ 0
CLK3-206ENST00000562078 SETQ01105 290 aaPredicted RBP15.06■□□□□ 0
CLK3-206ENST00000562078 NEDD9Q14511 834 aa15.06■□□□□ 0
CLK3-206ENST00000562078 C11orf91Q3C1V1 193 aa15.06■□□□□ 0
CLK3-206ENST00000562078 CCDC152Q4G0S7 254 aa15.06■□□□□ 0
CLK3-206ENST00000562078 CHST3Q7LGC8 479 aa15.06■□□□□ 0
CLK3-206ENST00000562078 JMYQ8N9B5 988 aa15.06■□□□□ 0
CLK3-206ENST00000562078 STAG1Q8WVM7 1258 aa15.06■□□□□ 0
CLK3-206ENST00000562078 RIN2Q8WYP3 895 aaPredicted RBP15.06■□□□□ 0
CLK3-206ENST00000562078 USP28Q96RU2 1077 aa15.06■□□□□ 0
CLK3-206ENST00000562078 EHD4Q9H223 541 aa15.06■□□□□ 0
CLK3-206ENST00000562078 PIH1D3Q9NQM4 214 aaKnown RBP15.06■□□□□ 0
CLK3-206ENST00000562078 CAPN7Q9Y6W3 813 aa15.06■□□□□ 0
CLK3-206ENST00000562078 RGPD3A6NKT7 1758 aaPredicted RBP15.05■□□□□ 0
CLK3-206ENST00000562078 RGPD4Q7Z3J3 1758 aa15.05■□□□□ 0
CLK3-206ENST00000562078 A0A1B0GVL5 298 aa15.05■□□□□ 0
CLK3-206ENST00000562078 GPAA1O43292 621 aa15.05■□□□□ 0
CLK3-206ENST00000562078 IDH1O75874 414 aaKnown RBP15.05■□□□□ 0
CLK3-206ENST00000562078 INHBEP58166 350 aa15.05■□□□□ 0
CLK3-206ENST00000562078 CFAP100Q494V2 611 aa15.05■□□□□ 0
CLK3-206ENST00000562078 CTCFLQ8NI51 663 aaPredicted RBP15.05■□□□□ 0
CLK3-206ENST00000562078 LPIN2Q92539 896 aa15.05■□□□□ 0
CLK3-206ENST00000562078 ZNF512BQ96KM6 892 aaPredicted RBP15.05■□□□□ 0
CLK3-206ENST00000562078 BPIFA3Q9BQP9 254 aa15.05■□□□□ 0
CLK3-206ENST00000562078 A1CFQ9NQ94 594 aaKnown RBP15.05■□□□□ 0
CLK3-206ENST00000562078 KIAA1468Q9P260 1216 aa15.05■□□□□ 0
CLK3-206ENST00000562078 FGFR2P21802 821 aa15.05■□□□□ -0
CLK3-206ENST00000562078 ARID4AP29374 1257 aaPredicted RBP15.05■□□□□ -0
CLK3-206ENST00000562078 ATP2B2Q01814 1243 aa15.05■□□□□ -0
CLK3-206ENST00000562078 SEMA3FQ13275 785 aa15.05■□□□□ -0
CLK3-206ENST00000562078 SLC9C2Q5TAH2 1124 aa15.05■□□□□ -0
CLK3-206ENST00000562078 IGSF22Q8N9C0 903 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms