RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	HDX	Q7Z353	690 aa		4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	HID1	Q8IV36	788 aa		4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	INTS4	Q96HW7	963 aa	Known RBP	4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	BCO2	Q9BYV7	579 aa		4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	TRIT1	Q9H3H1	467 aa	Known RBP	4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	IRAK3	Q9Y616	596 aa		4.02	□□□□□ -1.77
SPG11-223	ENST00000560858	TPP2	P29144	1249 aa	Predicted RBP	4.01	□□□□□ -1.77
SPG11-223	ENST00000560858	AFF3	P51826	1226 aa	Known RBP	4.01	□□□□□ -1.77
SPG11-223	ENST00000560858	ETF1	P62495	437 aa	Known RBP	4.01	□□□□□ -1.77
SPG11-223	ENST00000560858	SPATS1	Q496A3	300 aa		4.01	□□□□□ -1.77
SPG11-223	ENST00000560858	ZDHHC14	Q8IZN3	488 aa		4.01	□□□□□ -1.77
SPG11-223	ENST00000560858	SIGLEC10	Q96LC7	697 aa		4.01	□□□□□ -1.77
SPG11-223	ENST00000560858	NECAB3	Q96P71	396 aa	Predicted RBP	4.01	□□□□□ -1.77
SPG11-223	ENST00000560858	WNT10A	Q9GZT5	417 aa		4.01	□□□□□ -1.77
SPG11-223	ENST00000560858	GCM1	Q9NP62	436 aa		4.01	□□□□□ -1.77
SPG11-223	ENST00000560858	CYP8B1	Q9UNU6	501 aa		4.01	□□□□□ -1.77
SPG11-223	ENST00000560858		H3BRB1	525 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	IGHA2	P01877	340 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	ZGLP1	P0C6A0	271 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	CHRNE	Q04844	493 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	PLP2	Q04941	152 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	SSPN	Q14714	243 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	PHLDB3	Q6NSJ2	640 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	CDH24	Q86UP0	819 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	SP8	Q8IXZ3	490 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	FEZF2	Q8TBJ5	459 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	TUT1	Q9H6E5	874 aa	Known RBP	4	□□□□□ -1.77
SPG11-223	ENST00000560858	FBRS	Q9HAH7	460 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	SP110	Q9HB58	689 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	GPATCH2	Q9NW75	528 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	SIRT5	Q9NXA8	310 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	DUSP13	Q9UII6	198 aa		4	□□□□□ -1.77
SPG11-223	ENST00000560858	RSF1	Q96T23	1441 aa	Predicted RBP	4	□□□□□ -1.77
SPG11-223	ENST00000560858	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	4	□□□□□ -1.77
SPG11-223	ENST00000560858	OR14I1	A6ND48	311 aa		3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	CST3	P01034	146 aa	Predicted RBP	3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	PRKCSH	P14314	528 aa	Predicted RBP	3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	PI3	P19957	117 aa		3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	ETV3	P41162	512 aa		3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	SRSF3	P84103	164 aa	Known RBP	3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	ARHGAP4	P98171	946 aa		3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	EGR3	Q06889	387 aa		3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	INPP5A	Q14642	412 aa		3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	NKG7	Q16617	165 aa		3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	NXPE4	Q6UWF7	544 aa		3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	XAGE3	Q8WTP9	111 aa		3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	PPP1R13L	Q8WUF5	828 aa		3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	DACT3	Q96B18	629 aa	Predicted RBP	3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	DMRTB1	Q96MA1	342 aa		3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	TEPSIN	Q96N21	525 aa		3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	DUSP15	Q9H1R2	295 aa	Predicted RBP	3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	GPR160	Q9UJ42	338 aa		3.99	□□□□□ -1.77
SPG11-223	ENST00000560858	ZC3H12D	A2A288	527 aa	Known RBP	3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	ENC1	O14682	589 aa		3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	INSRR	P14616	1297 aa		3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	PUM1	Q14671	1186 aa	Known RBP eCLIP	3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	GAB4	Q2WGN9	574 aa		3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	TIGD5	Q53EQ6	642 aa		3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	PRAMEF13	Q5VWM6	474 aa		3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	LRFN4	Q6PJG9	635 aa		3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	TPTE2	Q6XPS3	522 aa		3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	PANK1	Q8TE04	598 aa		3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	ALKBH8	Q96BT7	664 aa	Known RBP	3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	GPR20	Q99678	358 aa		3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	MYRF	Q9Y2G1	1151 aa		3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	SNCAIP	Q9Y6H5	919 aa		3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	UNC13A	Q9UPW8	1703 aa		3.98	□□□□□ -1.77
SPG11-223	ENST00000560858	SLC22A31	A6NKX4	558 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	WASH4P	A8MWX3	477 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	GPR182	O15218	404 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	PAGE1	O75459	146 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	LTK	P29376	864 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	GSTT1	P30711	240 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	EFEMP1	Q12805	493 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	DUSP4	Q13115	394 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	PI16	Q6UXB8	463 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	FRMD5	Q7Z6J6	570 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	PLPPR2	Q96GM1	343 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	KCNH3	Q9ULD8	1083 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	PALD1	Q9ULE6	856 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	PPM1H	Q9ULR3	514 aa		3.97	□□□□□ -1.77
SPG11-223	ENST00000560858	ADAMTS20	P59510	1910 aa		3.96	□□□□□ -1.78
SPG11-223	ENST00000560858	HRK	O00198	91 aa		3.96	□□□□□ -1.78
SPG11-223	ENST00000560858	N4BP3	O15049	544 aa		3.96	□□□□□ -1.78
SPG11-223	ENST00000560858	SUV39H1	O43463	412 aa		3.96	□□□□□ -1.78
SPG11-223	ENST00000560858	PPP1R15A	O75807	674 aa	Predicted RBP	3.96	□□□□□ -1.78
SPG11-223	ENST00000560858	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	3.96	□□□□□ -1.78
SPG11-223	ENST00000560858	OLFML2B	Q68BL8	750 aa		3.96	□□□□□ -1.78
SPG11-223	ENST00000560858	B4GALNT3	Q6L9W6	998 aa		3.96	□□□□□ -1.78
SPG11-223	ENST00000560858	TSPYL5	Q86VY4	417 aa	Predicted RBP	3.96	□□□□□ -1.78
SPG11-223	ENST00000560858	ANKS4B	Q8N8V4	417 aa		3.96	□□□□□ -1.78
SPG11-223	ENST00000560858	GPR62	Q9BZJ7	368 aa		3.96	□□□□□ -1.78
SPG11-223	ENST00000560858	LUC7L	Q9NQ29	371 aa	Known RBP	3.96	□□□□□ -1.78
SPG11-223	ENST00000560858	WIZ	O95785	1651 aa		3.95	□□□□□ -1.78
SPG11-223	ENST00000560858	VMAC	Q2NL98	169 aa		3.95	□□□□□ -1.78
SPG11-223	ENST00000560858	ADGRF1	Q5T601	910 aa		3.95	□□□□□ -1.78
SPG11-223	ENST00000560858	CNKSR3	Q6P9H4	555 aa		3.95	□□□□□ -1.78
SPG11-223	ENST00000560858	C3orf58	Q8NDZ4	430 aa		3.95	□□□□□ -1.78
SPG11-223	ENST00000560858	SRCIN1	Q9C0H9	1055 aa		3.95	□□□□□ -1.78
SPG11-223	ENST00000560858	MBD1	Q9UIS9	605 aa	Predicted RBP	3.95	□□□□□ -1.78

Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms