RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 GYG1P46976 350 aa15.39■□□□□ 0.05
SHMT2-222ENST00000555774 TMTC3Q6ZXV5 915 aa15.39■□□□□ 0.05
SHMT2-222ENST00000555774 PRDM10Q9NQV6 1147 aa15.39■□□□□ 0.05
SHMT2-222ENST00000555774 VPS54Q9P1Q0 977 aa15.39■□□□□ 0.05
SHMT2-222ENST00000555774 PPP2R2CQ9Y2T4 447 aa15.39■□□□□ 0.05
SHMT2-222ENST00000555774 GABPB1Q06547 395 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-222ENST00000555774 TROAPQ12815 778 aa15.38■□□□□ 0.05
SHMT2-222ENST00000555774 FBXO38Q6PIJ6 1188 aa15.38■□□□□ 0.05
SHMT2-222ENST00000555774 FAM53CQ9NYF3 392 aa15.38■□□□□ 0.05
SHMT2-222ENST00000555774 DNAI1Q9UI46 699 aa15.38■□□□□ 0.05
SHMT2-222ENST00000555774 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.38■□□□□ 0.05
SHMT2-222ENST00000555774 COL5A3P25940 1745 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-222ENST00000555774 A0A1B0GTH6 734 aa15.38■□□□□ 0.05
SHMT2-222ENST00000555774 H2AFXP16104 143 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-222ENST00000555774 TRAPPC10P48553 1259 aa15.38■□□□□ 0.05
SHMT2-222ENST00000555774 NR1I3Q14994 352 aa15.38■□□□□ 0.05
SHMT2-222ENST00000555774 SPATA1Q5VX52 437 aa15.38■□□□□ 0.05
SHMT2-222ENST00000555774 TNFRSF25Q93038 417 aa15.38■□□□□ 0.05
SHMT2-222ENST00000555774 SHISA4Q96DD7 197 aa15.38■□□□□ 0.05
SHMT2-222ENST00000555774 GSDMAQ96QA5 445 aa15.38■□□□□ 0.05
SHMT2-222ENST00000555774 ROBO1Q9Y6N7 1651 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 IGSF3O75054 1194 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 SLC10A5Q5PT55 438 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 KRT222Q8N1A0 295 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 TC2NQ8N9U0 490 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 MARCH10Q8NA82 808 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-222ENST00000555774 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.37■□□□□ 0.05
SHMT2-222ENST00000555774 IQSEC3Q9UPP2 1182 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-222ENST00000555774 V9GYY5 206 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-222ENST00000555774 COL4A1P02462 1669 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 TPM1P09493 284 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 ATP2B1P20020 1258 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 ERFEQ4G0M1 354 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 CTR9Q6PD62 1173 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 FBXO33Q7Z6M2 555 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 PDILTQ8N807 584 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 DHX58Q96C10 678 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 ACSBG1Q96GR2 724 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 PAGE5Q96GU1 130 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 PKNOX2Q96KN3 472 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 CTAGE1Q96RT6 745 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 MINPP1Q9UNW1 487 aa15.37■□□□□ 0.05
SHMT2-222ENST00000555774 V9GY48 417 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-222ENST00000555774 CNTNAP5Q8WYK1 1306 aa15.36■□□□□ 0.05
SHMT2-222ENST00000555774 VWA3AA6NCI4 1184 aa15.36■□□□□ 0.05
SHMT2-222ENST00000555774 PLEKHA8P1O95397 391 aa15.36■□□□□ 0.05
SHMT2-222ENST00000555774 DYNLL1P63167 89 aaKnown RBP15.36■□□□□ 0.05
SHMT2-222ENST00000555774 ZNF827Q17R98 1081 aa15.36■□□□□ 0.05
SHMT2-222ENST00000555774 TTC38Q5R3I4 469 aa15.36■□□□□ 0.05
SHMT2-222ENST00000555774 USP49Q70CQ1 688 aa15.36■□□□□ 0.05
SHMT2-222ENST00000555774 GRAMD1CQ8IYS0 662 aa15.36■□□□□ 0.05
SHMT2-222ENST00000555774 CTCFLQ8NI51 663 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-222ENST00000555774 FAM84BQ96KN1 310 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-222ENST00000555774 PANX2Q96RD6 677 aa15.36■□□□□ 0.05
SHMT2-222ENST00000555774 NAA15Q9BXJ9 866 aaKnown RBP15.36■□□□□ 0.05
SHMT2-222ENST00000555774 MYH14Q7Z406 1995 aaKnown RBP15.36■□□□□ 0.05
SHMT2-222ENST00000555774 ATP2C1P98194 919 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-222ENST00000555774 DPYDQ12882 1025 aa15.35■□□□□ 0.05
SHMT2-222ENST00000555774 TRMT44Q8IYL2 757 aaKnown RBP15.35■□□□□ 0.05
SHMT2-222ENST00000555774 SYMPKQ92797 1274 aaKnown RBP15.35■□□□□ 0.05
SHMT2-222ENST00000555774 MED15Q96RN5 788 aa15.35■□□□□ 0.05
SHMT2-222ENST00000555774 CRNKL1Q9BZJ0 848 aaKnown RBP15.35■□□□□ 0.05
SHMT2-222ENST00000555774 ATP8A2Q9NTI2 1148 aa15.35■□□□□ 0.05
SHMT2-222ENST00000555774 MYH6P13533 1939 aa15.35■□□□□ 0.05
SHMT2-222ENST00000555774 SYNRGQ9UMZ2 1314 aa15.35■□□□□ 0.05
SHMT2-222ENST00000555774 CUL4BQ13620 913 aa15.35■□□□□ 0.05
SHMT2-222ENST00000555774 SBK1Q52WX2 424 aa15.35■□□□□ 0.05
SHMT2-222ENST00000555774 BARGINQ6ZT62 677 aa15.35■□□□□ 0.05
SHMT2-222ENST00000555774 NSUN4Q96CB9 384 aaKnown RBP15.35■□□□□ 0.05
SHMT2-222ENST00000555774 ARPP21Q9UBL0 812 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-222ENST00000555774 MAST2Q6P0Q8 1798 aa15.35■□□□□ 0.05
SHMT2-222ENST00000555774 A0A0G2JS52 829 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 FAM205CA6NFA0 338 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 EFCAB8A8MWE9 144 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 NPY5RQ15761 445 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 ERCC6LQ2NKX8 1250 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 EARS2Q5JPH6 523 aaKnown RBP15.34■□□□□ 0.05
SHMT2-222ENST00000555774 CDKAL1Q5VV42 579 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 MNS1Q8NEH6 495 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 SAMSN1Q9NSI8 373 aaKnown RBP15.34■□□□□ 0.05
SHMT2-222ENST00000555774 ARGLU1Q9NWB6 273 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-222ENST00000555774 PARP3Q9Y6F1 533 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 SPATA31A5Q5VU36 1347 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 SPATA31A7Q8IWB4 1347 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 LAMB1P07942 1786 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 A0A087X0B3 334 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 AKR1B15C9JRZ8 316 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-222ENST00000555774 ZNF384Q8TF68 577 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 UBXN4Q92575 508 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 EPSTI1Q96J88 318 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 ANKRD2Q9GZV1 360 aa15.34■□□□□ 0.05
SHMT2-222ENST00000555774 USP17L12C9JPN9 530 aa15.33■□□□□ 0.05
SHMT2-222ENST00000555774 USP17L21D6R901 530 aa15.33■□□□□ 0.05
SHMT2-222ENST00000555774 PRDM1O75626 825 aa15.33■□□□□ 0.05
SHMT2-222ENST00000555774 KIF20AO95235 890 aa15.33■□□□□ 0.05
SHMT2-222ENST00000555774 CASQ1P31415 396 aa15.33■□□□□ 0.05
SHMT2-222ENST00000555774 GOLGA8FQ08AF8 430 aa15.33■□□□□ 0.05
SHMT2-222ENST00000555774 GOLGA8DPQ0D2H9 430 aa15.33■□□□□ 0.05
SHMT2-222ENST00000555774 BMS1Q14692 1282 aaKnown RBP15.33■□□□□ 0.05
SHMT2-222ENST00000555774 FILIP1LQ4L180 1135 aa15.33■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms