RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 BMP6P22004 513 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 PDE4BQ07343 736 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 TERF2Q15554 542 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 TRIM65Q6PJ69 517 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 DIS3L2Q8IYB7 885 aaKnown RBP14.32□□□□□ -0.12
RNF4-222ENST00000541204 SEPT12Q8IYM1 358 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 CNBD1Q8NA66 436 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 TMX1Q9H3N1 280 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.31□□□□□ -0.12
RNF4-222ENST00000541204 CUTAO60888 179 aa14.31□□□□□ -0.12
RNF4-222ENST00000541204 ARHGAP29Q52LW3 1261 aa14.31□□□□□ -0.12
RNF4-222ENST00000541204 DZIP1Q86YF9 867 aaKnown RBP14.31□□□□□ -0.12
RNF4-222ENST00000541204 CRACR2BQ8N4Y2 399 aaPredicted RBP14.31□□□□□ -0.12
RNF4-222ENST00000541204 RGS22Q8NE09 1264 aa14.31□□□□□ -0.12
RNF4-222ENST00000541204 ZSCAN10Q96SZ4 725 aaPredicted RBP14.31□□□□□ -0.12
RNF4-222ENST00000541204 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.31□□□□□ -0.12
RNF4-222ENST00000541204 ECM29Q5VYK3 1845 aa14.31□□□□□ -0.12
RNF4-222ENST00000541204 IFIT1BQ5T764 474 aaKnown RBP14.31□□□□□ -0.12
RNF4-222ENST00000541204 OXER1Q8TDS5 423 aa14.31□□□□□ -0.12
RNF4-222ENST00000541204 AFF2P51816 1311 aa14.31□□□□□ -0.12
RNF4-222ENST00000541204 PHLPP2Q6ZVD8 1323 aa14.31□□□□□ -0.12
RNF4-222ENST00000541204 LAMB2P55268 1798 aa14.3□□□□□ -0.12
RNF4-222ENST00000541204 BTAF1O14981 1849 aa14.3□□□□□ -0.12
RNF4-222ENST00000541204 CCP110O43303 1012 aa14.3□□□□□ -0.12
RNF4-222ENST00000541204 TUBB4AP04350 444 aa14.3□□□□□ -0.12
RNF4-222ENST00000541204 CLCN6P51797 869 aa14.3□□□□□ -0.12
RNF4-222ENST00000541204 REXO1L1PQ8IX06 675 aa14.3□□□□□ -0.12
RNF4-222ENST00000541204 FAM177A1Q8N128 213 aaPredicted RBP14.3□□□□□ -0.12
RNF4-222ENST00000541204 INTS13Q9NVM9 706 aa14.3□□□□□ -0.12
RNF4-222ENST00000541204 URI1O94763 535 aaPredicted RBP14.3□□□□□ -0.12
RNF4-222ENST00000541204 PLEKHA8P1O95397 391 aa14.3□□□□□ -0.12
RNF4-222ENST00000541204 GRIN1Q05586 938 aa14.3□□□□□ -0.12
RNF4-222ENST00000541204 SAFBQ15424 915 aaKnown RBP eCLIP14.3□□□□□ -0.12
RNF4-222ENST00000541204 SEC23AQ15436 765 aa14.3□□□□□ -0.12
RNF4-222ENST00000541204 NOSTRINQ8IVI9 506 aa14.3□□□□□ -0.12
RNF4-222ENST00000541204 DCP1AQ9NPI6 582 aaPredicted RBP14.3□□□□□ -0.12
RNF4-222ENST00000541204 VPS54Q9P1Q0 977 aa14.3□□□□□ -0.12
RNF4-222ENST00000541204 MMP1P03956 469 aa14.29□□□□□ -0.12
RNF4-222ENST00000541204 DIXDC1Q155Q3 683 aa14.29□□□□□ -0.12
RNF4-222ENST00000541204 GRIK5Q16478 980 aa14.29□□□□□ -0.12
RNF4-222ENST00000541204 TMTC2Q8N394 836 aa14.29□□□□□ -0.12
RNF4-222ENST00000541204 KRI1Q8N9T8 703 aaKnown RBP14.29□□□□□ -0.12
RNF4-222ENST00000541204 BRIP1Q9BX63 1249 aa14.29□□□□□ -0.12
RNF4-222ENST00000541204 MDM2Q00987 491 aaPredicted RBP14.29□□□□□ -0.12
RNF4-222ENST00000541204 IQCA1Q86XH1 822 aa14.29□□□□□ -0.12
RNF4-222ENST00000541204 TMEM139Q8IV31 216 aa14.29□□□□□ -0.12
RNF4-222ENST00000541204 WASF1Q92558 559 aa14.29□□□□□ -0.12
RNF4-222ENST00000541204 CRNKL1Q9BZJ0 848 aaKnown RBP14.29□□□□□ -0.12
RNF4-222ENST00000541204 MCM9Q9NXL9 1143 aa14.29□□□□□ -0.12
RNF4-222ENST00000541204 ANAPC4Q9UJX5 808 aa14.29□□□□□ -0.12
RNF4-222ENST00000541204 MTMR7Q9Y216 660 aa14.29□□□□□ -0.12
RNF4-222ENST00000541204 V9GY48 417 aaPredicted RBP14.29□□□□□ -0.12
RNF4-222ENST00000541204 CCDC196A0A1B0GTZ2 297 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 USP17L8P0C7I0 530 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 AKAP17AQ02040 695 aaKnown RBP14.28□□□□□ -0.12
RNF4-222ENST00000541204 PDILTQ8N807 584 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 UBXN4Q92575 508 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 FHOD1Q9Y613 1164 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 FAM205CA6NFA0 338 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 DEXIO95424 95 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 TOB1P50616 345 aaPredicted RBP14.28□□□□□ -0.12
RNF4-222ENST00000541204 BMS1Q14692 1282 aaKnown RBP14.28□□□□□ -0.12
RNF4-222ENST00000541204 CATIPQ7Z7H3 387 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 CABP5Q9NP86 173 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 MAN1B1Q9UKM7 699 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 BAZ2AQ9UIF9 1905 aaKnown RBP14.28□□□□□ -0.12
RNF4-222ENST00000541204 STK36Q9NRP7 1315 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 VWA3AA6NCI4 1184 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 SEMA3EO15041 775 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 PRR29P0C7W0 189 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 HSPA1LP34931 641 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 FMR1Q06787 632 aaKnown RBP eCLIP14.28□□□□□ -0.12
RNF4-222ENST00000541204 ZNF827Q17R98 1081 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 MNS1Q8NEH6 495 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 RPGRQ92834 1020 aaKnown RBP14.28□□□□□ -0.12
RNF4-222ENST00000541204 CARD6Q9BX69 1037 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 PPP2R2CQ9Y2T4 447 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 CACNA1SQ13698 1873 aa14.28□□□□□ -0.12
RNF4-222ENST00000541204 SCN7AQ01118 1682 aa14.27□□□□□ -0.12
RNF4-222ENST00000541204 SPATA31A6Q5VVP1 1343 aa14.27□□□□□ -0.12
RNF4-222ENST00000541204 POLR2DO15514 142 aaKnown RBP14.27□□□□□ -0.12
RNF4-222ENST00000541204 ZSCAN12O43309 604 aa14.27□□□□□ -0.12
RNF4-222ENST00000541204 GRAPQ13588 217 aa14.27□□□□□ -0.12
RNF4-222ENST00000541204 POSTNQ15063 836 aa14.27□□□□□ -0.12
RNF4-222ENST00000541204 PRR5LQ6MZQ0 368 aa14.27□□□□□ -0.12
RNF4-222ENST00000541204 TRMT44Q8IYL2 757 aaKnown RBP14.27□□□□□ -0.12
RNF4-222ENST00000541204 GRAMD1CQ8IYS0 662 aa14.27□□□□□ -0.12
RNF4-222ENST00000541204 GRAPLQ8TC17 118 aaPredicted RBP14.27□□□□□ -0.12
RNF4-222ENST00000541204 SHISA4Q96DD7 197 aa14.27□□□□□ -0.12
RNF4-222ENST00000541204 PCDHB6Q9Y5E3 794 aa14.27□□□□□ -0.12
RNF4-222ENST00000541204 PARP3Q9Y6F1 533 aa14.27□□□□□ -0.12
RNF4-222ENST00000541204 CHD4Q14839 1912 aa14.27□□□□□ -0.13
RNF4-222ENST00000541204 ARHGAP6O43182 974 aa14.27□□□□□ -0.13
RNF4-222ENST00000541204 ADKP55263 362 aaKnown RBP14.27□□□□□ -0.13
RNF4-222ENST00000541204 DYNLL2Q96FJ2 89 aa14.27□□□□□ -0.13
RNF4-222ENST00000541204 BAG1Q99933 345 aaPredicted RBP14.27□□□□□ -0.13
RNF4-222ENST00000541204 SERTAD1Q9UHV2 236 aa14.27□□□□□ -0.13
RNF4-222ENST00000541204 NFE2L3Q9Y4A8 694 aa14.27□□□□□ -0.13
RNF4-222ENST00000541204 TIAM2Q8IVF5 1701 aa14.26□□□□□ -0.13
RNF4-222ENST00000541204 TSPY2A6NKD2 308 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 221.5 ms