RNA–Protein interactions for RNA: ENST00000537551.5

CHFR-215, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 2

Gene CHFR, Length 596 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-215	ENST00000537551	ADGRA2	Q96PE1	1338 aa		27.75	■■■□□ 2.03
CHFR-215	ENST00000537551	ECM2	O94769	699 aa	Predicted RBP	27.75	■■■□□ 2.03
CHFR-215	ENST00000537551	MCMDC2	Q4G0Z9	681 aa		27.75	■■■□□ 2.03
CHFR-215	ENST00000537551	MKNK2	Q9HBH9	465 aa		27.75	■■■□□ 2.03
CHFR-215	ENST00000537551	CCDC85C	A6NKD9	419 aa		27.74	■■■□□ 2.03
CHFR-215	ENST00000537551	USP14	P54578	494 aa		27.74	■■■□□ 2.03
CHFR-215	ENST00000537551	LACTB	P83111	547 aa	Predicted RBP	27.74	■■■□□ 2.03
CHFR-215	ENST00000537551	NMI	Q13287	307 aa	Predicted RBP	27.74	■■■□□ 2.03
CHFR-215	ENST00000537551	FBXO46	Q6PJ61	603 aa	Predicted RBP	27.74	■■■□□ 2.03
CHFR-215	ENST00000537551	ACER1	Q8TDN7	264 aa		27.74	■■■□□ 2.03
CHFR-215	ENST00000537551	EMILIN3	Q9NT22	766 aa		27.74	■■■□□ 2.03
CHFR-215	ENST00000537551		A0A0D9SFI3	127 aa		27.73	■■■□□ 2.03
CHFR-215	ENST00000537551	SDS	P20132	328 aa		27.73	■■■□□ 2.03
CHFR-215	ENST00000537551	IRX3	P78415	501 aa	Predicted RBP	27.73	■■■□□ 2.03
CHFR-215	ENST00000537551	BCR	P11274	1271 aa		27.72	■■■□□ 2.03
CHFR-215	ENST00000537551	KIAA1683	Q9H0B3	1180 aa		27.72	■■■□□ 2.03
CHFR-215	ENST00000537551	ASCC2	Q9H1I8	757 aa	Predicted RBP	27.72	■■■□□ 2.03
CHFR-215	ENST00000537551	ZNF287	Q9HBT7	754 aa		27.72	■■■□□ 2.03
CHFR-215	ENST00000537551	LOC285556	D6RIA3	1793 aa		27.71	■■■□□ 2.03
CHFR-215	ENST00000537551	CAP1	Q01518	475 aa		27.71	■■■□□ 2.03
CHFR-215	ENST00000537551	ARHGAP39	Q9C0H5	1083 aa		27.71	■■■□□ 2.03
CHFR-215	ENST00000537551	DIAPH3	Q9NSV4	1193 aa		27.71	■■■□□ 2.03
CHFR-215	ENST00000537551	MYH8	P13535	1937 aa		27.71	■■■□□ 2.03
CHFR-215	ENST00000537551	SLC3A2	P08195	630 aa	Known RBP	27.7	■■■□□ 2.02
CHFR-215	ENST00000537551	HOXA7	P31268	230 aa	Predicted RBP	27.7	■■■□□ 2.02
CHFR-215	ENST00000537551	ICA1	Q05084	483 aa		27.7	■■■□□ 2.02
CHFR-215	ENST00000537551	VPS53	Q5VIR6	699 aa		27.7	■■■□□ 2.02
CHFR-215	ENST00000537551	ARHGEF10L	Q9HCE6	1279 aa		27.7	■■■□□ 2.02
CHFR-215	ENST00000537551	HPS5	Q9UPZ3	1129 aa		27.7	■■■□□ 2.02
CHFR-215	ENST00000537551	HIP1	O00291	1037 aa		27.69	■■■□□ 2.02
CHFR-215	ENST00000537551	FMNL1	O95466	1100 aa	Predicted RBP	27.69	■■■□□ 2.02
CHFR-215	ENST00000537551	PSMC4	P43686	418 aa		27.69	■■■□□ 2.02
CHFR-215	ENST00000537551	PPARA	Q07869	468 aa		27.69	■■■□□ 2.02
CHFR-215	ENST00000537551	TTC22	Q5TAA0	569 aa		27.69	■■■□□ 2.02
CHFR-215	ENST00000537551	ZNF444	Q8N0Y2	327 aa	Predicted RBP	27.69	■■■□□ 2.02
CHFR-215	ENST00000537551	ANKRD13C	Q8N6S4	541 aa		27.69	■■■□□ 2.02
CHFR-215	ENST00000537551	C12orf42	Q96LP6	360 aa		27.69	■■■□□ 2.02
CHFR-215	ENST00000537551	PTPN22	Q9Y2R2	807 aa		27.69	■■■□□ 2.02
CHFR-215	ENST00000537551	ROBO3	Q96MS0	1386 aa		27.69	■■■□□ 2.02
CHFR-215	ENST00000537551	GCLC	P48506	637 aa	Predicted RBP	27.68	■■■□□ 2.02
CHFR-215	ENST00000537551	MFAP1	P55081	439 aa	Known RBP	27.68	■■■□□ 2.02
CHFR-215	ENST00000537551	ATP2B2	Q01814	1243 aa		27.68	■■■□□ 2.02
CHFR-215	ENST00000537551	PDE4B	Q07343	736 aa		27.68	■■■□□ 2.02
CHFR-215	ENST00000537551	CLEC10A	Q8IUN9	316 aa		27.68	■■■□□ 2.02
CHFR-215	ENST00000537551	P2RX7	Q99572	595 aa	Known RBP	27.68	■■■□□ 2.02
CHFR-215	ENST00000537551		A0A1W2PRG0	241 aa		27.67	■■■□□ 2.02
CHFR-215	ENST00000537551	PRDM1	O75626	825 aa		27.67	■■■□□ 2.02
CHFR-215	ENST00000537551	RASA1	P20936	1047 aa		27.67	■■■□□ 2.02
CHFR-215	ENST00000537551	CWC27	Q6UX04	472 aa	Known RBP	27.67	■■■□□ 2.02
CHFR-215	ENST00000537551	ZNF589	Q86UQ0	364 aa	Predicted RBP	27.67	■■■□□ 2.02
CHFR-215	ENST00000537551	SH2D4A	Q9H788	454 aa		27.67	■■■□□ 2.02
CHFR-215	ENST00000537551	KANSL2	Q9H9L4	492 aa		27.67	■■■□□ 2.02
CHFR-215	ENST00000537551	CCDC171	Q6TFL3	1326 aa		27.67	■■■□□ 2.02
CHFR-215	ENST00000537551	USP17L15	C9J2P7	530 aa		27.66	■■■□□ 2.02
CHFR-215	ENST00000537551	USP17L13	C9JLJ4	530 aa		27.66	■■■□□ 2.02
CHFR-215	ENST00000537551	USP17L11	C9JVI0	530 aa		27.66	■■■□□ 2.02
CHFR-215	ENST00000537551	USP17L18	D6R9N7	530 aa		27.66	■■■□□ 2.02
CHFR-215	ENST00000537551	USP17L22	D6RA61	530 aa		27.66	■■■□□ 2.02
CHFR-215	ENST00000537551	USP17L17	D6RBQ6	530 aa		27.66	■■■□□ 2.02
CHFR-215	ENST00000537551	USP17L19	D6RCP7	530 aa		27.66	■■■□□ 2.02
CHFR-215	ENST00000537551	USP17L20	D6RJB6	530 aa		27.66	■■■□□ 2.02
CHFR-215	ENST00000537551	FOXP2	O15409	715 aa		27.66	■■■□□ 2.02
CHFR-215	ENST00000537551	GNRH1	P01148	92 aa		27.66	■■■□□ 2.02
CHFR-215	ENST00000537551	USP17L24	Q0WX57	530 aa		27.66	■■■□□ 2.02
CHFR-215	ENST00000537551	NEFL	P07196	543 aa		27.65	■■■□□ 2.02
CHFR-215	ENST00000537551	HSPD1	P10809	573 aa	Known RBP	27.65	■■■□□ 2.02
CHFR-215	ENST00000537551	GSPT1	P15170	499 aa	Known RBP	27.65	■■■□□ 2.02
CHFR-215	ENST00000537551	VCAM1	P19320	739 aa		27.65	■■■□□ 2.02
CHFR-215	ENST00000537551	HOXD10	P28358	340 aa		27.65	■■■□□ 2.02
CHFR-215	ENST00000537551	FCGRT	P55899	365 aa		27.65	■■■□□ 2.02
CHFR-215	ENST00000537551	SIAH1	Q8IUQ4	282 aa		27.65	■■■□□ 2.02
CHFR-215	ENST00000537551	TRIM47	Q96LD4	638 aa		27.65	■■■□□ 2.02
CHFR-215	ENST00000537551	EEF2	P13639	858 aa	Known RBP	27.64	■■■□□ 2.02
CHFR-215	ENST00000537551	CTGF	P29279	349 aa		27.64	■■■□□ 2.02
CHFR-215	ENST00000537551	HERVK_113	P62684	666 aa		27.64	■■■□□ 2.02
CHFR-215	ENST00000537551	ALX1	Q15699	326 aa		27.64	■■■□□ 2.02
CHFR-215	ENST00000537551	FAM110C	Q1W6H9	321 aa		27.64	■■■□□ 2.02
CHFR-215	ENST00000537551	CENPQ	Q7L2Z9	268 aa	Predicted RBP	27.64	■■■□□ 2.02
CHFR-215	ENST00000537551	RPAP3	Q9H6T3	665 aa	Predicted RBP	27.64	■■■□□ 2.02
CHFR-215	ENST00000537551	TMX2	Q9Y320	296 aa		27.64	■■■□□ 2.02
CHFR-215	ENST00000537551	FGA	P02671	866 aa		27.63	■■■□□ 2.01
CHFR-215	ENST00000537551	CTDSPL2	Q05D32	466 aa		27.63	■■■□□ 2.01
CHFR-215	ENST00000537551	CATSPERG	Q6ZRH7	1159 aa		27.63	■■■□□ 2.01
CHFR-215	ENST00000537551	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	27.62	■■■□□ 2.01
CHFR-215	ENST00000537551	TSPY3	P0CV98	308 aa		27.61	■■■□□ 2.01
CHFR-215	ENST00000537551	TSPY8	P0CW00	308 aa		27.61	■■■□□ 2.01
CHFR-215	ENST00000537551	PRMT2	P55345	433 aa		27.61	■■■□□ 2.01
CHFR-215	ENST00000537551	GTF3C2	Q8WUA4	911 aa	Predicted RBP	27.61	■■■□□ 2.01
CHFR-215	ENST00000537551	VCPKMT	Q9H867	229 aa		27.61	■■■□□ 2.01
CHFR-215	ENST00000537551	SRRD	Q9UH36	339 aa		27.61	■■■□□ 2.01
CHFR-215	ENST00000537551	PTCH2	Q9Y6C5	1203 aa		27.61	■■■□□ 2.01
CHFR-215	ENST00000537551	ZSWIM8	A7E2V4	1837 aa		27.6	■■■□□ 2.01
CHFR-215	ENST00000537551	TNPO2	O14787	897 aa	Known RBP	27.6	■■■□□ 2.01
CHFR-215	ENST00000537551	RAD21	O60216	631 aa		27.6	■■■□□ 2.01
CHFR-215	ENST00000537551	SPICE1	Q8N0Z3	855 aa		27.6	■■■□□ 2.01
CHFR-215	ENST00000537551	LPAR1	Q92633	364 aa		27.6	■■■□□ 2.01
CHFR-215	ENST00000537551	CCDC136	Q96JN2	1154 aa		27.6	■■■□□ 2.01
CHFR-215	ENST00000537551	PAGR1	Q9BTK6	254 aa		27.6	■■■□□ 2.01
CHFR-215	ENST00000537551	TANGO6	Q9C0B7	1094 aa		27.6	■■■□□ 2.01
CHFR-215	ENST00000537551	TFAP4	Q01664	338 aa		27.59	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms