RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 TAOK2Q9UL54 1235 aa15.92■□□□□ 0.14
VPS28-210ENST00000529182 MYH8P13535 1937 aa15.92■□□□□ 0.14
VPS28-210ENST00000529182 CASP8AP2Q9UKL3 1982 aa15.91■□□□□ 0.14
VPS28-210ENST00000529182 HAND2P61296 217 aa15.91■□□□□ 0.14
VPS28-210ENST00000529182 BMP2KLQ5H9B9 411 aa15.91■□□□□ 0.14
VPS28-210ENST00000529182 PROCA1Q8NCQ7 364 aaPredicted RBP15.91■□□□□ 0.14
VPS28-210ENST00000529182 FEZ1Q99689 392 aa15.91■□□□□ 0.14
VPS28-210ENST00000529182 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.91■□□□□ 0.14
VPS28-210ENST00000529182 ZFYVE28Q9HCC9 887 aa15.91■□□□□ 0.14
VPS28-210ENST00000529182 AGTPBP1Q9UPW5 1226 aa15.91■□□□□ 0.14
VPS28-210ENST00000529182 A0A1W2PRG0 241 aa15.9■□□□□ 0.14
VPS28-210ENST00000529182 ICA1Q05084 483 aa15.9■□□□□ 0.14
VPS28-210ENST00000529182 SIAH1Q8IUQ4 282 aa15.9■□□□□ 0.14
VPS28-210ENST00000529182 ZNF444Q8N0Y2 327 aaPredicted RBP15.9■□□□□ 0.14
VPS28-210ENST00000529182 ZCCHC17Q9NP64 241 aaKnown RBP15.9■□□□□ 0.14
VPS28-210ENST00000529182 EMILIN3Q9NT22 766 aa15.9■□□□□ 0.14
VPS28-210ENST00000529182 TMOD4Q9NZQ9 345 aa15.9■□□□□ 0.14
VPS28-210ENST00000529182 ZMYM6O95789 1325 aa15.9■□□□□ 0.14
VPS28-210ENST00000529182 LOC285556D6RIA3 1793 aa15.9■□□□□ 0.14
VPS28-210ENST00000529182 C19orf81C9J6K1 198 aa15.89■□□□□ 0.13
VPS28-210ENST00000529182 SLC3A2P08195 630 aaKnown RBP15.89■□□□□ 0.13
VPS28-210ENST00000529182 ATP2B2Q01814 1243 aa15.89■□□□□ 0.13
VPS28-210ENST00000529182 PDE4BQ07343 736 aa15.89■□□□□ 0.13
VPS28-210ENST00000529182 FAM47AQ5JRC9 791 aa15.89■□□□□ 0.13
VPS28-210ENST00000529182 USP17L2Q6R6M4 530 aa15.89■□□□□ 0.13
VPS28-210ENST00000529182 RUFY2Q8WXA3 655 aa15.89■□□□□ 0.13
VPS28-210ENST00000529182 NBPF3Q9H094 633 aa15.89■□□□□ 0.13
VPS28-210ENST00000529182 CPA4Q9UI42 421 aa15.89■□□□□ 0.13
VPS28-210ENST00000529182 ANAPC4Q9UJX5 808 aa15.89■□□□□ 0.13
VPS28-210ENST00000529182 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.89■□□□□ 0.131e-7■■■■□ 24.2
VPS28-210ENST00000529182 RAD50Q92878 1312 aa15.89■□□□□ 0.13
VPS28-210ENST00000529182 SGSM2O43147 1006 aa15.88■□□□□ 0.13
VPS28-210ENST00000529182 TLR2O60603 784 aa15.88■□□□□ 0.13
VPS28-210ENST00000529182 FKTNO75072 461 aa15.88■□□□□ 0.13
VPS28-210ENST00000529182 TBC1D10CQ8IV04 446 aa15.88■□□□□ 0.13
VPS28-210ENST00000529182 PARK7Q99497 189 aaKnown RBP15.88■□□□□ 0.13
VPS28-210ENST00000529182 DSCC1Q9BVC3 393 aa15.88■□□□□ 0.13
VPS28-210ENST00000529182 KIAA1683Q9H0B3 1180 aa15.88■□□□□ 0.13
VPS28-210ENST00000529182 ZNF287Q9HBT7 754 aa15.88■□□□□ 0.13
VPS28-210ENST00000529182 ADGRA2Q96PE1 1338 aa15.88■□□□□ 0.13
VPS28-210ENST00000529182 ECM2O94769 699 aaPredicted RBP15.87■□□□□ 0.13
VPS28-210ENST00000529182 EEF2P13639 858 aaKnown RBP15.87■□□□□ 0.13
VPS28-210ENST00000529182 USP14P54578 494 aa15.87■□□□□ 0.13
VPS28-210ENST00000529182 CAP1Q01518 475 aa15.87■□□□□ 0.13
VPS28-210ENST00000529182 TFAP4Q01664 338 aa15.87■□□□□ 0.13
VPS28-210ENST00000529182 PTH1RQ03431 593 aa15.87■□□□□ 0.13
VPS28-210ENST00000529182 NOM1Q5C9Z4 860 aaKnown RBP15.87■□□□□ 0.13
VPS28-210ENST00000529182 KIAA1755Q5JYT7 1200 aa15.87■□□□□ 0.13
VPS28-210ENST00000529182 ASCC2Q9H1I8 757 aaPredicted RBP15.87■□□□□ 0.13
VPS28-210ENST00000529182 KANSL2Q9H9L4 492 aa15.87■□□□□ 0.13
VPS28-210ENST00000529182 TOMM22Q9NS69 142 aa15.87■□□□□ 0.13
VPS28-210ENST00000529182 SLC45A1Q9Y2W3 748 aa15.87■□□□□ 0.13
VPS28-210ENST00000529182 GREB1LQ9C091 1923 aaPredicted RBP15.86■□□□□ 0.13
VPS28-210ENST00000529182 IGKV6D-41A0A0C4DH26 115 aa15.86■□□□□ 0.13
VPS28-210ENST00000529182 TSPY3P0CV98 308 aa15.86■□□□□ 0.13
VPS28-210ENST00000529182 TSPY8P0CW00 308 aa15.86■□□□□ 0.13
VPS28-210ENST00000529182 VCAM1P19320 739 aa15.86■□□□□ 0.13
VPS28-210ENST00000529182 SP3Q02447 781 aa15.86■□□□□ 0.13
VPS28-210ENST00000529182 RRP12Q5JTH9 1297 aaKnown RBP15.86■□□□□ 0.13
VPS28-210ENST00000529182 C17orf99Q6UX52 265 aa15.86■□□□□ 0.13
VPS28-210ENST00000529182 NKX2-3Q8TAU0 364 aa15.86■□□□□ 0.13
VPS28-210ENST00000529182 CD99L2Q8TCZ2 262 aa15.86■□□□□ 0.13
VPS28-210ENST00000529182 C12orf42Q96LP6 360 aa15.86■□□□□ 0.13
VPS28-210ENST00000529182 ARHGEF10LQ9HCE6 1279 aa15.86■□□□□ 0.13
VPS28-210ENST00000529182 TMX2Q9Y320 296 aa15.86■□□□□ 0.13
VPS28-210ENST00000529182 ZNF213O14771 459 aa15.85■□□□□ 0.13
VPS28-210ENST00000529182 RANBP6O60518 1105 aaKnown RBP15.85■□□□□ 0.13
VPS28-210ENST00000529182 FGRP09769 529 aa15.85■□□□□ 0.13
VPS28-210ENST00000529182 OSBPP22059 807 aa15.85■□□□□ 0.13
VPS28-210ENST00000529182 PABPC4Q13310 644 aaKnown RBP eCLIP15.85■□□□□ 0.131e-7■■■□□ 18.8
VPS28-210ENST00000529182 SPICE1Q8N0Z3 855 aa15.85■□□□□ 0.13
VPS28-210ENST00000529182 NEDD1Q8NHV4 660 aa15.85■□□□□ 0.13
VPS28-210ENST00000529182 SMCR8Q8TEV9 937 aaPredicted RBP15.85■□□□□ 0.13
VPS28-210ENST00000529182 CEP95Q96GE4 821 aa15.85■□□□□ 0.13
VPS28-210ENST00000529182 ESYT1Q9BSJ8 1104 aa15.85■□□□□ 0.13
VPS28-210ENST00000529182 TSPY2A6NKD2 308 aa15.84■□□□□ 0.13
VPS28-210ENST00000529182 ORC4O43929 436 aa15.84■□□□□ 0.13
VPS28-210ENST00000529182 NMT2O60551 498 aa15.84■□□□□ 0.13
VPS28-210ENST00000529182 BCRP11274 1271 aa15.84■□□□□ 0.13
VPS28-210ENST00000529182 HOXA7P31268 230 aaPredicted RBP15.84■□□□□ 0.13
VPS28-210ENST00000529182 IRX3P78415 501 aaPredicted RBP15.84■□□□□ 0.13
VPS28-210ENST00000529182 AKNAD1Q5T1N1 836 aa15.84■□□□□ 0.13
VPS28-210ENST00000529182 STAG1Q8WVM7 1258 aa15.84■□□□□ 0.13
VPS28-210ENST00000529182 P2RX7Q99572 595 aaKnown RBP15.84■□□□□ 0.13
VPS28-210ENST00000529182 ARHGAP39Q9C0H5 1083 aa15.84■□□□□ 0.13
VPS28-210ENST00000529182 RPAP3Q9H6T3 665 aaPredicted RBP15.84■□□□□ 0.13
VPS28-210ENST00000529182 VCPKMTQ9H867 229 aa15.84■□□□□ 0.13
VPS28-210ENST00000529182 MTMR4Q9NYA4 1195 aa15.84■□□□□ 0.13
VPS28-210ENST00000529182 CLIP2Q9UDT6 1046 aa15.84■□□□□ 0.13
VPS28-210ENST00000529182 PNMA3Q9UL41 463 aa15.84■□□□□ 0.13
VPS28-210ENST00000529182 NEDD4P46934 1319 aa15.84■□□□□ 0.13
VPS28-210ENST00000529182 PLIN4Q96Q06 1357 aa15.84■□□□□ 0.13
VPS28-210ENST00000529182 RAD21O60216 631 aa15.83■□□□□ 0.12
VPS28-210ENST00000529182 PEX10O60683 326 aa15.83■□□□□ 0.12
VPS28-210ENST00000529182 IMMTQ16891 758 aaKnown RBP15.83■□□□□ 0.12
VPS28-210ENST00000529182 MFSD6Q6ZSS7 791 aa15.83■□□□□ 0.12
VPS28-210ENST00000529182 TNS4Q8IZW8 715 aa15.83■□□□□ 0.12
VPS28-210ENST00000529182 SH2D4AQ9H788 454 aa15.83■□□□□ 0.12
VPS28-210ENST00000529182 IL17RBQ9NRM6 502 aa15.83■□□□□ 0.12
VPS28-210ENST00000529182 NYAP2Q9P242 653 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms