RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 SLC9C1Q4G0N8 1177 aa11.24□□□□□ -0.61
HDAC3-215ENST00000519474 CATSPERGQ6ZRH7 1159 aa11.24□□□□□ -0.61
HDAC3-215ENST00000519474 APPBP2Q92624 585 aa11.24□□□□□ -0.61
HDAC3-215ENST00000519474 C12orf42Q96LP6 360 aa11.24□□□□□ -0.61
HDAC3-215ENST00000519474 SEC62Q99442 399 aaKnown RBP11.24□□□□□ -0.61
HDAC3-215ENST00000519474 KIAA1683Q9H0B3 1180 aa11.24□□□□□ -0.61
HDAC3-215ENST00000519474 SWAP70Q9UH65 585 aa11.24□□□□□ -0.61
HDAC3-215ENST00000519474 ZSWIM8A7E2V4 1837 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 PATL2C9JE40 543 aaKnown RBP11.23□□□□□ -0.61
HDAC3-215ENST00000519474 ZFYP08048 801 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-215ENST00000519474 MX1P20591 662 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 GRK4P32298 578 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 FLT3LGP49771 235 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 PDE1AP54750 535 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 PRKCZQ05513 592 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 MTFR1Q15390 333 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 ZYXQ15942 572 aaKnown RBP11.23□□□□□ -0.61
HDAC3-215ENST00000519474 SBK1Q52WX2 424 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 KIAA1755Q5JYT7 1200 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 GIMAP6Q6P9H5 292 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 C16orf86Q6ZW13 317 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 SMC5Q8IY18 1101 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 RAET1EQ8TD07 263 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 CCDC17Q96LX7 622 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 TMEM106CQ9BVX2 250 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 RWDD1Q9H446 243 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-215ENST00000519474 TXNRD2Q9NNW7 524 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 MORF4L1Q9UBU8 362 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 MYPNQ86TC9 1320 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 ATAD5Q96QE3 1844 aa11.23□□□□□ -0.61
HDAC3-215ENST00000519474 USP17L15C9J2P7 530 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 USP17L13C9JLJ4 530 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 USP17L11C9JVI0 530 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 USP17L18D6R9N7 530 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 USP17L22D6RA61 530 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 USP17L17D6RBQ6 530 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 USP17L19D6RCP7 530 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 USP17L20D6RJB6 530 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 M0R2C6 588 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 MPHOSPH10O00566 681 aaKnown RBP11.22□□□□□ -0.61
HDAC3-215ENST00000519474 MYCP01106 439 aaPredicted RBP11.22□□□□□ -0.61
HDAC3-215ENST00000519474 AKR1B1P15121 316 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 USP14P54578 494 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 HERVK_113P62684 666 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 IRX3P78415 501 aaPredicted RBP11.22□□□□□ -0.61
HDAC3-215ENST00000519474 USP17L24Q0WX57 530 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 ZMYM1Q5SVZ6 1142 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 DOCK3Q8IZD9 2030 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 ANP32EQ9BTT0 268 aa11.22□□□□□ -0.61
HDAC3-215ENST00000519474 TNPO2O14787 897 aaKnown RBP11.21□□□□□ -0.61
HDAC3-215ENST00000519474 GPAA1O43292 621 aa11.21□□□□□ -0.61
HDAC3-215ENST00000519474 ADCY3O60266 1144 aa11.21□□□□□ -0.61
HDAC3-215ENST00000519474 CNMDO75829 334 aa11.21□□□□□ -0.61
HDAC3-215ENST00000519474 IRF5Q13568 498 aa11.21□□□□□ -0.61
HDAC3-215ENST00000519474 B4GALNT3Q6L9W6 998 aa11.21□□□□□ -0.61
HDAC3-215ENST00000519474 TMEM179Q6ZVK1 233 aa11.21□□□□□ -0.61
HDAC3-215ENST00000519474 IFNL3Q8IZI9 196 aa11.21□□□□□ -0.61
HDAC3-215ENST00000519474 GPRC5AQ8NFJ5 357 aa11.21□□□□□ -0.61
HDAC3-215ENST00000519474 PXYLP1Q8TE99 480 aa11.21□□□□□ -0.61
HDAC3-215ENST00000519474 COA7Q96BR5 231 aa11.21□□□□□ -0.61
HDAC3-215ENST00000519474 DDRGK1Q96HY6 314 aa11.21□□□□□ -0.61
HDAC3-215ENST00000519474 PKNOX2Q96KN3 472 aa11.21□□□□□ -0.61
HDAC3-215ENST00000519474 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.21□□□□□ -0.61
HDAC3-215ENST00000519474 ZBTB47Q9UFB7 747 aaPredicted RBP11.21□□□□□ -0.61
HDAC3-215ENST00000519474 MINDY4BA8MYZ0 360 aa11.2□□□□□ -0.62
HDAC3-215ENST00000519474 GNAT2P19087 354 aa11.2□□□□□ -0.62
HDAC3-215ENST00000519474 LRRFIP1Q32MZ4 808 aaKnown RBP11.2□□□□□ -0.62
HDAC3-215ENST00000519474 STK11IPQ8N1F8 1099 aa11.2□□□□□ -0.62
HDAC3-215ENST00000519474 FEZ1Q99689 392 aa11.2□□□□□ -0.62
HDAC3-215ENST00000519474 LNPKQ9C0E8 428 aa11.2□□□□□ -0.62
HDAC3-215ENST00000519474 EPB41L4AQ9HCS5 686 aaPredicted RBP11.2□□□□□ -0.62
HDAC3-215ENST00000519474 BIN2Q9UBW5 565 aaPredicted RBP11.2□□□□□ -0.62
HDAC3-215ENST00000519474 TMX2Q9Y320 296 aa11.2□□□□□ -0.62
HDAC3-215ENST00000519474 APPP05067 770 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 EEF2P13639 858 aaKnown RBP11.19□□□□□ -0.62
HDAC3-215ENST00000519474 ELNP15502 786 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 VCAM1P19320 739 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 RASA1P20936 1047 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 ERVK-9P63128 1117 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 ERVK-24P63145 666 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 COG2Q14746 738 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 LBX2Q6XYB7 198 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 CLEC10AQ8IUN9 316 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 PLEKHM2Q8IWE5 1019 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 AMOTL1Q8IY63 956 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 EVI5LQ96CN4 794 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 FSD1Q9BTV5 496 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 PORCNQ9H237 461 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 RPAP3Q9H6T3 665 aaPredicted RBP11.19□□□□□ -0.62
HDAC3-215ENST00000519474 KANSL2Q9H9L4 492 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 HOXC10Q9NYD6 342 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 BTBD7Q9P203 1132 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 RABGAP1Q9Y3P9 1069 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 GTF3C3Q9Y5Q9 886 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 BAZ2AQ9UIF9 1905 aaKnown RBP11.19□□□□□ -0.62
HDAC3-215ENST00000519474 MGAMO43451 1857 aa11.19□□□□□ -0.62
HDAC3-215ENST00000519474 LOC285556D6RIA3 1793 aa11.18□□□□□ -0.62
HDAC3-215ENST00000519474 FOXP2O15409 715 aa11.18□□□□□ -0.62
HDAC3-215ENST00000519474 GJB1P08034 283 aa11.18□□□□□ -0.62
HDAC3-215ENST00000519474 CCL5P13501 91 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms