RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 C9IYK1 514 aa10.54□□□□□ -0.72
NUP54-215ENST00000514313 IBSPP21815 317 aaPredicted RBP10.54□□□□□ -0.72
NUP54-215ENST00000514313 GBP1P32455 592 aa10.54□□□□□ -0.72
NUP54-215ENST00000514313 CAP2P40123 477 aa10.54□□□□□ -0.72
NUP54-215ENST00000514313 IGBP1P78318 339 aa10.54□□□□□ -0.72
NUP54-215ENST00000514313 BBS9Q3SYG4 887 aa10.54□□□□□ -0.72
NUP54-215ENST00000514313 TMEM67Q5HYA8 995 aa10.54□□□□□ -0.72
NUP54-215ENST00000514313 ZNF385CQ66K41 422 aaPredicted RBP10.54□□□□□ -0.72
NUP54-215ENST00000514313 ZCRB1Q8TBF4 217 aaKnown RBP10.54□□□□□ -0.72
NUP54-215ENST00000514313 CYB5D2Q8WUJ1 264 aa10.54□□□□□ -0.72
NUP54-215ENST00000514313 DHRS1Q96LJ7 313 aa10.54□□□□□ -0.72
NUP54-215ENST00000514313 PLVAPQ9BX97 442 aa10.54□□□□□ -0.72
NUP54-215ENST00000514313 PIDD1Q9HB75 910 aa10.54□□□□□ -0.72
NUP54-215ENST00000514313 ACTL7BQ9Y614 415 aa10.54□□□□□ -0.72
NUP54-215ENST00000514313 PPP1R12AO14974 1030 aaPredicted RBP10.53□□□□□ -0.72
NUP54-215ENST00000514313 RNGTTO60942 597 aaKnown RBP10.53□□□□□ -0.72
NUP54-215ENST00000514313 CST3P01034 146 aaPredicted RBP10.53□□□□□ -0.72
NUP54-215ENST00000514313 TP53P04637 393 aaPredicted RBP10.53□□□□□ -0.72
NUP54-215ENST00000514313 SNRPNP63162 240 aaKnown RBP10.53□□□□□ -0.72
NUP54-215ENST00000514313 TCEA2Q15560 299 aa10.53□□□□□ -0.72
NUP54-215ENST00000514313 LINC00114Q6XXX2 140 aa10.53□□□□□ -0.72
NUP54-215ENST00000514313 LRRC47Q8N1G4 583 aaKnown RBP10.53□□□□□ -0.72
NUP54-215ENST00000514313 MRPL18Q9H0U6 180 aaKnown RBP10.53□□□□□ -0.72
NUP54-215ENST00000514313 FAM105AQ9NUU6 356 aa10.53□□□□□ -0.72
NUP54-215ENST00000514313 SUSD2Q9UGT4 822 aa10.53□□□□□ -0.72
NUP54-215ENST00000514313 NOP58Q9Y2X3 529 aaKnown RBP10.53□□□□□ -0.72
NUP54-215ENST00000514313 IQCA1LA6NCM1 817 aa10.52□□□□□ -0.73
NUP54-215ENST00000514313 ASPAP45381 313 aa10.52□□□□□ -0.73
NUP54-215ENST00000514313 AGGF1Q8N302 714 aaeCLIP10.52□□□□□ -0.73
NUP54-215ENST00000514313 C12orf50Q8NA57 414 aaPredicted RBP10.52□□□□□ -0.73
NUP54-215ENST00000514313 ZBTB38Q8NAP3 1195 aaPredicted RBP10.52□□□□□ -0.73
NUP54-215ENST00000514313 C2CD4AQ8NCU7 369 aaPredicted RBP10.52□□□□□ -0.73
NUP54-215ENST00000514313 XAGE3Q8WTP9 111 aa10.52□□□□□ -0.73
NUP54-215ENST00000514313 PCDH12Q9NPG4 1184 aa10.52□□□□□ -0.73
NUP54-215ENST00000514313 CD2APQ9Y5K6 639 aa10.52□□□□□ -0.73
NUP54-215ENST00000514313 CLEC3AO75596 197 aa10.51□□□□□ -0.73
NUP54-215ENST00000514313 FDX2Q6P4F2 183 aa10.51□□□□□ -0.73
NUP54-215ENST00000514313 IGF2-ASQ6U949 168 aa10.51□□□□□ -0.73
NUP54-215ENST00000514313 SVOPQ8N4V2 548 aa10.51□□□□□ -0.73
NUP54-215ENST00000514313 ZNF512BQ96KM6 892 aaPredicted RBP10.51□□□□□ -0.73
NUP54-215ENST00000514313 HAUS7Q99871 368 aa10.51□□□□□ -0.73
NUP54-215ENST00000514313 EPHX1P07099 455 aa10.5□□□□□ -0.73
NUP54-215ENST00000514313 ZNF143P52747 638 aaPredicted RBP10.5□□□□□ -0.73
NUP54-215ENST00000514313 LONRF2Q1L5Z9 754 aa10.5□□□□□ -0.73
NUP54-215ENST00000514313 SV2CQ496J9 727 aa10.5□□□□□ -0.73
NUP54-215ENST00000514313 TAF7LQ5H9L4 462 aa10.5□□□□□ -0.73
NUP54-215ENST00000514313 AXDND1Q5T1B0 1012 aaPredicted RBP10.5□□□□□ -0.73
NUP54-215ENST00000514313 SMYD4Q8IYR2 804 aaPredicted RBP10.5□□□□□ -0.73
NUP54-215ENST00000514313 SYNPOQ8N3V7 929 aa10.5□□□□□ -0.73
NUP54-215ENST00000514313 SGSM3Q96HU1 749 aa10.5□□□□□ -0.73
NUP54-215ENST00000514313 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.5□□□□□ -0.73
NUP54-215ENST00000514313 SSU72Q9NP77 194 aaKnown RBP10.5□□□□□ -0.73
NUP54-215ENST00000514313 ANKRD34BA5PLL1 514 aa10.49□□□□□ -0.73
NUP54-215ENST00000514313 GNB5O14775 395 aa10.49□□□□□ -0.73
NUP54-215ENST00000514313 CBFA2T2O43439 604 aa10.49□□□□□ -0.73
NUP54-215ENST00000514313 ELNP15502 786 aa10.49□□□□□ -0.73
NUP54-215ENST00000514313 MASP1P48740 699 aa10.49□□□□□ -0.73
NUP54-215ENST00000514313 ANAPC15P60006 121 aa10.49□□□□□ -0.73
NUP54-215ENST00000514313 TRIM28Q13263 835 aaKnown RBP10.49□□□□□ -0.73
NUP54-215ENST00000514313 DALRD3Q5D0E6 543 aaKnown RBP10.49□□□□□ -0.73
NUP54-215ENST00000514313 FOXB2Q5VYV0 432 aa10.49□□□□□ -0.73
NUP54-215ENST00000514313 ARMCX6Q7L4S7 300 aa10.49□□□□□ -0.73
NUP54-215ENST00000514313 SMARCC1Q92922 1105 aaPredicted RBP10.49□□□□□ -0.73
NUP54-215ENST00000514313 FOXQ1Q9C009 403 aa10.49□□□□□ -0.73
NUP54-215ENST00000514313 ARHGEF4Q9NR80 690 aa10.49□□□□□ -0.73
NUP54-215ENST00000514313 ENAMQ9NRM1 1142 aa10.49□□□□□ -0.73
NUP54-215ENST00000514313 A0A1W2PQU0 124 aa10.48□□□□□ -0.73
NUP54-215ENST00000514313 SPDYE3A6NKU9 549 aa10.48□□□□□ -0.73
NUP54-215ENST00000514313 F8W735 103 aaPredicted RBP10.48□□□□□ -0.73
NUP54-215ENST00000514313 AGRPO00253 132 aa10.48□□□□□ -0.73
NUP54-215ENST00000514313 NAT2P11245 290 aa10.48□□□□□ -0.73
NUP54-215ENST00000514313 C21orf62-AS1Q17RA5 79 aa10.48□□□□□ -0.73
NUP54-215ENST00000514313 DCAF15Q66K64 600 aa10.48□□□□□ -0.73
NUP54-215ENST00000514313 ANKRD34AQ69YU3 496 aa10.48□□□□□ -0.73
NUP54-215ENST00000514313 HEATR6Q6AI08 1181 aaKnown RBP10.48□□□□□ -0.73
NUP54-215ENST00000514313 SHISA2Q6UWI4 295 aa10.48□□□□□ -0.73
NUP54-215ENST00000514313 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.48□□□□□ -0.73
NUP54-215ENST00000514313 PPP1R13LQ8WUF5 828 aa10.48□□□□□ -0.73
NUP54-215ENST00000514313 SLC26A8Q96RN1 970 aa10.48□□□□□ -0.73
NUP54-215ENST00000514313 KLHL25Q9H0H3 589 aa10.48□□□□□ -0.73
NUP54-215ENST00000514313 CWC22Q9HCG8 908 aaKnown RBP10.48□□□□□ -0.73
NUP54-215ENST00000514313 APEX2Q9UBZ4 518 aa10.48□□□□□ -0.73
NUP54-215ENST00000514313 RAB11FIP3O75154 756 aa10.47□□□□□ -0.73
NUP54-215ENST00000514313 LRIG2O94898 1065 aa10.47□□□□□ -0.73
NUP54-215ENST00000514313 PREPP48147 710 aa10.47□□□□□ -0.73
NUP54-215ENST00000514313 CCDC144CPQ8IYA2 1237 aa10.47□□□□□ -0.73
NUP54-215ENST00000514313 EXOC2Q96KP1 924 aa10.47□□□□□ -0.73
NUP54-215ENST00000514313 FGD4Q96M96 766 aa10.47□□□□□ -0.73
NUP54-215ENST00000514313 LGR4Q9BXB1 951 aa10.47□□□□□ -0.73
NUP54-215ENST00000514313 TMX1Q9H3N1 280 aa10.47□□□□□ -0.73
NUP54-215ENST00000514313 WFS1O76024 890 aa10.46□□□□□ -0.73
NUP54-215ENST00000514313 RAB6AP20340 208 aa10.46□□□□□ -0.73
NUP54-215ENST00000514313 L1CAMP32004 1257 aa10.46□□□□□ -0.73
NUP54-215ENST00000514313 AMPD3Q01432 767 aa10.46□□□□□ -0.73
NUP54-215ENST00000514313 ZC3H12BQ5HYM0 836 aaKnown RBP10.46□□□□□ -0.73
NUP54-215ENST00000514313 YOD1Q5VVQ6 348 aaPredicted RBP10.46□□□□□ -0.73
NUP54-215ENST00000514313 APBA2Q99767 749 aa10.46□□□□□ -0.73
NUP54-215ENST00000514313 MKRN2Q9H000 416 aaKnown RBP10.46□□□□□ -0.73
NUP54-215ENST00000514313 PCOLCE2Q9UKZ9 415 aa10.46□□□□□ -0.73
NUP54-215ENST00000514313 PLAAQ9Y263 795 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms