RNA–Protein interactions for RNA: ENST00000494334.1

COL1A1-208, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-208ENST00000494334 ACER1Q8TDN7 264 aa16.1■□□□□ 0.17
COL1A1-208ENST00000494334 ZCCHC17Q9NP64 241 aaKnown RBP16.1■□□□□ 0.17
COL1A1-208ENST00000494334 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.1■□□□□ 0.17
COL1A1-208ENST00000494334 LAMB1P07942 1786 aa16.1■□□□□ 0.17
COL1A1-208ENST00000494334 PHIPQ8WWQ0 1821 aa16.1■□□□□ 0.17
COL1A1-208ENST00000494334 A0A1W2PRG0 241 aa16.09■□□□□ 0.17
COL1A1-208ENST00000494334 PDHXO00330 501 aa16.09■□□□□ 0.17
COL1A1-208ENST00000494334 FGRP09769 529 aa16.09■□□□□ 0.17
COL1A1-208ENST00000494334 PTH1RQ03431 593 aa16.09■□□□□ 0.17
COL1A1-208ENST00000494334 CRHR2Q13324 411 aa16.09■□□□□ 0.17
COL1A1-208ENST00000494334 CLEC10AQ8IUN9 316 aa16.09■□□□□ 0.17
COL1A1-208ENST00000494334 PROCA1Q8NCQ7 364 aaPredicted RBP16.09■□□□□ 0.17
COL1A1-208ENST00000494334 ESYT1Q9BSJ8 1104 aa16.09■□□□□ 0.17
COL1A1-208ENST00000494334 ATAD5Q96QE3 1844 aa16.09■□□□□ 0.17
COL1A1-208ENST00000494334 ZNF213O14771 459 aa16.08■□□□□ 0.16
COL1A1-208ENST00000494334 ICA1Q05084 483 aa16.08■□□□□ 0.16
COL1A1-208ENST00000494334 TAF1CQ15572 869 aaPredicted RBP16.08■□□□□ 0.16
COL1A1-208ENST00000494334 FAM47AQ5JRC9 791 aa16.08■□□□□ 0.16
COL1A1-208ENST00000494334 TREML2Q5T2D2 321 aa16.08■□□□□ 0.16
COL1A1-208ENST00000494334 NBPF3Q9H094 633 aa16.08■□□□□ 0.16
COL1A1-208ENST00000494334 KANSL2Q9H9L4 492 aa16.08■□□□□ 0.16
COL1A1-208ENST00000494334 EMILIN3Q9NT22 766 aa16.08■□□□□ 0.16
COL1A1-208ENST00000494334 CTNNA3Q9UI47 895 aa16.08■□□□□ 0.16
COL1A1-208ENST00000494334 AGTPBP1Q9UPW5 1226 aa16.08■□□□□ 0.16
COL1A1-208ENST00000494334 CDC45O75419 566 aa16.07■□□□□ 0.16
COL1A1-208ENST00000494334 TFAP4Q01664 338 aa16.07■□□□□ 0.16
COL1A1-208ENST00000494334 ZYXQ15942 572 aaKnown RBP16.07■□□□□ 0.16
COL1A1-208ENST00000494334 AKNAD1Q5T1N1 836 aa16.07■□□□□ 0.16
COL1A1-208ENST00000494334 USP17L2Q6R6M4 530 aa16.07■□□□□ 0.16
COL1A1-208ENST00000494334 TBC1D10CQ8IV04 446 aa16.07■□□□□ 0.16
COL1A1-208ENST00000494334 NEDD1Q8NHV4 660 aa16.07■□□□□ 0.16
COL1A1-208ENST00000494334 FEZ1Q99689 392 aa16.07■□□□□ 0.16
COL1A1-208ENST00000494334 KIAA1683Q9H0B3 1180 aa16.07■□□□□ 0.16
COL1A1-208ENST00000494334 ZFYVE28Q9HCC9 887 aa16.07■□□□□ 0.16
COL1A1-208ENST00000494334 TMOD4Q9NZQ9 345 aa16.07■□□□□ 0.16
COL1A1-208ENST00000494334 SLC45A1Q9Y2W3 748 aa16.07■□□□□ 0.16
COL1A1-208ENST00000494334 IGKV6D-41A0A0C4DH26 115 aa16.06■□□□□ 0.16
COL1A1-208ENST00000494334 GPR25O00155 361 aa16.06■□□□□ 0.16
COL1A1-208ENST00000494334 ORC4O43929 436 aa16.06■□□□□ 0.16
COL1A1-208ENST00000494334 TSPY3P0CV98 308 aa16.06■□□□□ 0.16
COL1A1-208ENST00000494334 TSPY8P0CW00 308 aa16.06■□□□□ 0.16
COL1A1-208ENST00000494334 EEF2P13639 858 aaKnown RBP16.06■□□□□ 0.16
COL1A1-208ENST00000494334 USP14P54578 494 aa16.06■□□□□ 0.16
COL1A1-208ENST00000494334 IMMTQ16891 758 aaKnown RBP16.06■□□□□ 0.16
COL1A1-208ENST00000494334 MFSD6Q6ZSS7 791 aa16.06■□□□□ 0.16
COL1A1-208ENST00000494334 STAG1Q8WVM7 1258 aa16.06■□□□□ 0.16
COL1A1-208ENST00000494334 MAP4K1Q92918 833 aa16.06■□□□□ 0.16
COL1A1-208ENST00000494334 C12orf42Q96LP6 360 aa16.06■□□□□ 0.16
COL1A1-208ENST00000494334 PRDM10Q9NQV6 1147 aa16.06■□□□□ 0.16
COL1A1-208ENST00000494334 TMX2Q9Y320 296 aa16.06■□□□□ 0.16
COL1A1-208ENST00000494334 RANBP6O60518 1105 aaKnown RBP16.05■□□□□ 0.16
COL1A1-208ENST00000494334 TLR2O60603 784 aa16.05■□□□□ 0.16
COL1A1-208ENST00000494334 CYP2C8P10632 490 aa16.05■□□□□ 0.16
COL1A1-208ENST00000494334 NOM1Q5C9Z4 860 aaKnown RBP16.05■□□□□ 0.16
COL1A1-208ENST00000494334 CASC1Q6TDU7 716 aa16.05■□□□□ 0.16
COL1A1-208ENST00000494334 KIAA1211Q6ZU35 1233 aa16.05■□□□□ 0.16
COL1A1-208ENST00000494334 LSG1Q9H089 658 aaKnown RBP16.05■□□□□ 0.16
COL1A1-208ENST00000494334 RNF41Q9H4P4 317 aaPredicted RBP16.05■□□□□ 0.16
COL1A1-208ENST00000494334 ARHGEF10LQ9HCE6 1279 aa16.05■□□□□ 0.16
COL1A1-208ENST00000494334 TOMM22Q9NS69 142 aa16.05■□□□□ 0.16
COL1A1-208ENST00000494334 U3KPZ7 1027 aaPredicted RBP16.05■□□□□ 0.16
COL1A1-208ENST00000494334 PLIN4Q96Q06 1357 aa16.04■□□□□ 0.16
COL1A1-208ENST00000494334 TSPY2A6NKD2 308 aa16.04■□□□□ 0.16
COL1A1-208ENST00000494334 PCP11498 1178 aaKnown RBP16.04■□□□□ 0.16
COL1A1-208ENST00000494334 HOXA7P31268 230 aaPredicted RBP16.04■□□□□ 0.16
COL1A1-208ENST00000494334 ATP2B2Q01814 1243 aa16.04■□□□□ 0.16
COL1A1-208ENST00000494334 RRP12Q5JTH9 1297 aaKnown RBP16.04■□□□□ 0.16
COL1A1-208ENST00000494334 NKX2-3Q8TAU0 364 aa16.04■□□□□ 0.16
COL1A1-208ENST00000494334 ZNF296Q8WUU4 475 aaPredicted RBP16.04■□□□□ 0.16
COL1A1-208ENST00000494334 CEP95Q96GE4 821 aa16.04■□□□□ 0.16
COL1A1-208ENST00000494334 PARK7Q99497 189 aaKnown RBP16.04■□□□□ 0.16
COL1A1-208ENST00000494334 MTMR4Q9NYA4 1195 aa16.04■□□□□ 0.16
COL1A1-208ENST00000494334 NYAP2Q9P242 653 aa16.04■□□□□ 0.16
COL1A1-208ENST00000494334 PTPRFP10586 1907 aa16.04■□□□□ 0.16
COL1A1-208ENST00000494334 NEDD4P46934 1319 aa16.03■□□□□ 0.16
COL1A1-208ENST00000494334 CYP21A2P08686 494 aa16.03■□□□□ 0.16
COL1A1-208ENST00000494334 VCAM1P19320 739 aa16.03■□□□□ 0.16
COL1A1-208ENST00000494334 OSBPP22059 807 aa16.03■□□□□ 0.16
COL1A1-208ENST00000494334 PABPC4Q13310 644 aaKnown RBP eCLIP16.03■□□□□ 0.16
COL1A1-208ENST00000494334 KIAA1755Q5JYT7 1200 aa16.03■□□□□ 0.16
COL1A1-208ENST00000494334 C17orf99Q6UX52 265 aa16.03■□□□□ 0.16
COL1A1-208ENST00000494334 SH2D4AQ9H788 454 aa16.03■□□□□ 0.16
COL1A1-208ENST00000494334 VCPKMTQ9H867 229 aa16.03■□□□□ 0.16
COL1A1-208ENST00000494334 ANO2Q9NQ90 1003 aa16.03■□□□□ 0.16
COL1A1-208ENST00000494334 IL17RBQ9NRM6 502 aa16.03■□□□□ 0.16
COL1A1-208ENST00000494334 CLIP2Q9UDT6 1046 aa16.03■□□□□ 0.16
COL1A1-208ENST00000494334 RBM8AQ9Y5S9 174 aaKnown RBP16.03■□□□□ 0.16
COL1A1-208ENST00000494334 MYH8P13535 1937 aa16.02■□□□□ 0.16
COL1A1-208ENST00000494334 ADGRA2Q96PE1 1338 aa16.02■□□□□ 0.16
COL1A1-208ENST00000494334 NMT2O60551 498 aa16.02■□□□□ 0.16
COL1A1-208ENST00000494334 MKL1Q969V6 931 aa16.02■□□□□ 0.16
COL1A1-208ENST00000494334 ASCC2Q9H1I8 757 aaPredicted RBP16.02■□□□□ 0.16
COL1A1-208ENST00000494334 CPA4Q9UI42 421 aa16.02■□□□□ 0.16
COL1A1-208ENST00000494334 PNMA3Q9UL41 463 aa16.02■□□□□ 0.16
COL1A1-208ENST00000494334 USP17L15C9J2P7 530 aa16.01■□□□□ 0.15
COL1A1-208ENST00000494334 USP17L13C9JLJ4 530 aa16.01■□□□□ 0.15
COL1A1-208ENST00000494334 USP17L11C9JVI0 530 aa16.01■□□□□ 0.15
COL1A1-208ENST00000494334 USP17L18D6R9N7 530 aa16.01■□□□□ 0.15
COL1A1-208ENST00000494334 USP17L22D6RA61 530 aa16.01■□□□□ 0.15
COL1A1-208ENST00000494334 USP17L17D6RBQ6 530 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms