RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 NEK1Q96PY6 1258 aa20.29■□□□□ 0.84
LIME1-208ENST00000493265 ZKSCAN3Q9BRR0 538 aa20.29■□□□□ 0.84
LIME1-208ENST00000493265 CABP5Q9NP86 173 aa20.29■□□□□ 0.84
LIME1-208ENST00000493265 ZNF112Q9UJU3 913 aa20.29■□□□□ 0.84
LIME1-208ENST00000493265 CSADQ9Y600 493 aa20.29■□□□□ 0.84
LIME1-208ENST00000493265 CTNND1O60716 968 aaKnown RBP20.28■□□□□ 0.84
LIME1-208ENST00000493265 MKRN3Q13064 507 aaKnown RBP20.28■□□□□ 0.84
LIME1-208ENST00000493265 TSGA10IPQ3SY00 556 aa20.28■□□□□ 0.84
LIME1-208ENST00000493265 CYB5R4Q7L1T6 521 aa20.28■□□□□ 0.84
LIME1-208ENST00000493265 CCDC84Q86UT8 332 aaPredicted RBP20.28■□□□□ 0.84
LIME1-208ENST00000493265 CLEC10AQ8IUN9 316 aa20.28■□□□□ 0.84
LIME1-208ENST00000493265 CLMNQ96JQ2 1002 aa20.28■□□□□ 0.84
LIME1-208ENST00000493265 CCDC17Q96LX7 622 aa20.28■□□□□ 0.84
LIME1-208ENST00000493265 ELP3Q9H9T3 547 aa20.28■□□□□ 0.84
LIME1-208ENST00000493265 TAOK2Q9UL54 1235 aa20.28■□□□□ 0.84
LIME1-208ENST00000493265 NMT2O60551 498 aa20.27■□□□□ 0.84
LIME1-208ENST00000493265 CASTP20810 708 aaKnown RBP20.27■□□□□ 0.84
LIME1-208ENST00000493265 ATP2B2Q01814 1243 aa20.27■□□□□ 0.84
LIME1-208ENST00000493265 VGLL4Q14135 290 aa20.27■□□□□ 0.84
LIME1-208ENST00000493265 SEPT2Q15019 361 aa20.27■□□□□ 0.84
LIME1-208ENST00000493265 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.27■□□□□ 0.84
LIME1-208ENST00000493265 TBC1D32Q96NH3 1257 aa20.27■□□□□ 0.84
LIME1-208ENST00000493265 PICK1Q9NRD5 415 aa20.27■□□□□ 0.84
LIME1-208ENST00000493265 ZSWIM5Q9P217 1185 aa20.27■□□□□ 0.84
LIME1-208ENST00000493265 ZBTB21Q9ULJ3 1066 aa20.27■□□□□ 0.84
LIME1-208ENST00000493265 TBC1D8O95759 1140 aa20.26■□□□□ 0.83
LIME1-208ENST00000493265 PSMA5P28066 241 aa20.26■□□□□ 0.83
LIME1-208ENST00000493265 RBM25P49756 843 aaKnown RBP20.26■□□□□ 0.83
LIME1-208ENST00000493265 ANAPC15P60006 121 aa20.26■□□□□ 0.83
LIME1-208ENST00000493265 BLOC1S2Q6QNY1 142 aa20.26■□□□□ 0.83
LIME1-208ENST00000493265 MB21D2Q8IYB1 491 aaPredicted RBP20.26■□□□□ 0.83
LIME1-208ENST00000493265 ANKRD13AQ8IZ07 590 aa20.26■□□□□ 0.83
LIME1-208ENST00000493265 SCYL3Q8IZE3 742 aa20.26■□□□□ 0.83
LIME1-208ENST00000493265 TCEANC2Q96MN5 208 aa20.26■□□□□ 0.83
LIME1-208ENST00000493265 LRRC2Q9BYS8 371 aa20.26■□□□□ 0.83
LIME1-208ENST00000493265 UPF3BQ9BZI7 483 aaKnown RBP20.26■□□□□ 0.83
LIME1-208ENST00000493265 OTOFQ9HC10 1997 aa20.26■□□□□ 0.83
LIME1-208ENST00000493265 ATAD5Q96QE3 1844 aa20.25■□□□□ 0.83
LIME1-208ENST00000493265 PRC1O43663 620 aa20.25■□□□□ 0.83
LIME1-208ENST00000493265 MAP3K11Q16584 847 aa20.25■□□□□ 0.83
LIME1-208ENST00000493265 TMEM179Q6ZVK1 233 aa20.25■□□□□ 0.83
LIME1-208ENST00000493265 NEDD1Q8NHV4 660 aa20.25■□□□□ 0.83
LIME1-208ENST00000493265 UBAC1Q9BSL1 405 aa20.25■□□□□ 0.83
LIME1-208ENST00000493265 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.25■□□□□ 0.83
LIME1-208ENST00000493265 SNCAIPQ9Y6H5 919 aa20.25■□□□□ 0.83
LIME1-208ENST00000493265 DOCK1Q14185 1865 aa20.24■□□□□ 0.83
LIME1-208ENST00000493265 ASNSP08243 561 aa20.24■□□□□ 0.83
LIME1-208ENST00000493265 MCM5P33992 734 aa20.24■□□□□ 0.83
LIME1-208ENST00000493265 ANTXR2P58335 489 aa20.24■□□□□ 0.83
LIME1-208ENST00000493265 LDLRAD1Q5T700 205 aa20.24■□□□□ 0.83
LIME1-208ENST00000493265 IQCA1Q86XH1 822 aa20.24■□□□□ 0.83
LIME1-208ENST00000493265 ZNF296Q8WUU4 475 aaPredicted RBP20.24■□□□□ 0.83
LIME1-208ENST00000493265 SLC10A4Q96EP9 437 aa20.24■□□□□ 0.83
LIME1-208ENST00000493265 CYP46A1Q9Y6A2 500 aa20.24■□□□□ 0.83
LIME1-208ENST00000493265 IFIT3O14879 490 aaKnown RBP20.23■□□□□ 0.83
LIME1-208ENST00000493265 HMGB1P09429 215 aaKnown RBP20.23■□□□□ 0.83
LIME1-208ENST00000493265 GUCY1A2P33402 732 aa20.23■□□□□ 0.83
LIME1-208ENST00000493265 FGD1P98174 961 aa20.23■□□□□ 0.83
LIME1-208ENST00000493265 NOL9Q5SY16 702 aaKnown RBP20.23■□□□□ 0.83
LIME1-208ENST00000493265 CNKSR2Q8WXI2 1034 aa20.23■□□□□ 0.83
LIME1-208ENST00000493265 CEP95Q96GE4 821 aa20.23■□□□□ 0.83
LIME1-208ENST00000493265 ZSCAN10Q96SZ4 725 aaPredicted RBP20.23■□□□□ 0.83
LIME1-208ENST00000493265 IL17RBQ9NRM6 502 aa20.23■□□□□ 0.83
LIME1-208ENST00000493265 HPS5Q9UPZ3 1129 aa20.23■□□□□ 0.83
LIME1-208ENST00000493265 PTPRAP18433 802 aa20.22■□□□□ 0.83
LIME1-208ENST00000493265 RPS6KB1P23443 525 aa20.22■□□□□ 0.83
LIME1-208ENST00000493265 ICA1Q05084 483 aa20.22■□□□□ 0.83
LIME1-208ENST00000493265 TMEM67Q5HYA8 995 aa20.22■□□□□ 0.83
LIME1-208ENST00000493265 RUFY3Q7L099 469 aa20.22■□□□□ 0.83
LIME1-208ENST00000493265 DHX32Q7L7V1 743 aaKnown RBP20.22■□□□□ 0.83
LIME1-208ENST00000493265 OTUD5Q96G74 571 aa20.22■□□□□ 0.83
LIME1-208ENST00000493265 ZSWIM6Q9HCJ5 1215 aa20.22■□□□□ 0.83
LIME1-208ENST00000493265 GPHNQ9NQX3 736 aaPredicted RBP20.22■□□□□ 0.83
LIME1-208ENST00000493265 STX8Q9UNK0 236 aa20.22■□□□□ 0.83
LIME1-208ENST00000493265 ZHX2Q9Y6X8 837 aa20.22■□□□□ 0.83
LIME1-208ENST00000493265 TNKSO95271 1327 aa20.22■□□□□ 0.83
LIME1-208ENST00000493265 ERICH2A1L162 156 aa20.21■□□□□ 0.83
LIME1-208ENST00000493265 USP17L5A8MUK1 530 aa20.21■□□□□ 0.83
LIME1-208ENST00000493265 EEF2P13639 858 aaKnown RBP20.21■□□□□ 0.83
LIME1-208ENST00000493265 SART3Q15020 963 aaKnown RBP20.21■□□□□ 0.83
LIME1-208ENST00000493265 CHMP4CQ96CF2 233 aa20.21■□□□□ 0.83
LIME1-208ENST00000493265 KIF2CQ99661 725 aa20.21■□□□□ 0.83
LIME1-208ENST00000493265 TM6SF1Q9BZW5 370 aa20.21■□□□□ 0.83
LIME1-208ENST00000493265 KANSL2Q9H9L4 492 aa20.21■□□□□ 0.83
LIME1-208ENST00000493265 MTMR4Q9NYA4 1195 aa20.21■□□□□ 0.83
LIME1-208ENST00000493265 CLIP2Q9UDT6 1046 aa20.21■□□□□ 0.83
LIME1-208ENST00000493265 PLIN4Q96Q06 1357 aa20.21■□□□□ 0.83
LIME1-208ENST00000493265 IGKV6D-41A0A0C4DH26 115 aa20.2■□□□□ 0.82
LIME1-208ENST00000493265 RAD21O60216 631 aa20.2■□□□□ 0.82
LIME1-208ENST00000493265 TM4SF4P48230 202 aa20.2■□□□□ 0.82
LIME1-208ENST00000493265 NEK4P51957 841 aa20.2■□□□□ 0.82
LIME1-208ENST00000493265 EXOSC10Q01780 885 aaKnown RBP20.2■□□□□ 0.82
LIME1-208ENST00000493265 ZYXQ15942 572 aaKnown RBP20.2■□□□□ 0.82
LIME1-208ENST00000493265 ACER1Q8TDN7 264 aa20.2■□□□□ 0.82
LIME1-208ENST00000493265 OPTNQ96CV9 577 aa20.2■□□□□ 0.82
LIME1-208ENST00000493265 GINM1Q9NU53 330 aa20.2■□□□□ 0.82
LIME1-208ENST00000493265 PDRG1Q9NUG6 133 aa20.2■□□□□ 0.82
LIME1-208ENST00000493265 MTMR7Q9Y216 660 aa20.2■□□□□ 0.82
LIME1-208ENST00000493265 TRIM75PA6NK02 468 aa20.19■□□□□ 0.82
LIME1-208ENST00000493265 GPR25O00155 361 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms