RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 UNC13AQ9UPW8 1703 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 IGF2BP3O00425 579 aaKnown RBP eCLIP3.56□□□□□ -1.84
HMGB1-208ENST00000490788 SLITRK5O94991 958 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 HTR3BO95264 441 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 RECKO95980 971 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 GBP1P32455 592 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 AOC3Q16853 763 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 MSMPQ1L6U9 139 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 SEZ6Q53EL9 994 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 GK5Q6ZS86 529 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 CDH24Q86UP0 819 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 ZNF654Q8IZM8 581 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 PLD6Q8N2A8 252 aaKnown RBP3.56□□□□□ -1.84
HMGB1-208ENST00000490788 MFSD4AQ8N468 514 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 FBXO27Q8NI29 283 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 CYB5D2Q8WUJ1 264 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 ASB11Q8WXH4 323 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 UBP1Q9NZI7 540 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 VAV3Q9UKW4 847 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 PCDHB14Q9Y5E9 798 aa3.56□□□□□ -1.84
HMGB1-208ENST00000490788 RIMBP3CA6NJZ7 1639 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 RIMBP3BA6NNM3 1639 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 RIMBP3Q9UFD9 1639 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 GREM1O60565 184 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 PRNPP04156 253 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 RAG1P15918 1043 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 KIR3DL1P43629 444 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 RBM25P49756 843 aaKnown RBP3.55□□□□□ -1.84
HMGB1-208ENST00000490788 OXCT1P55809 520 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 PRKCQQ04759 706 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 PLCL1Q15111 1095 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 LRRFIP1Q32MZ4 808 aaKnown RBP3.55□□□□□ -1.84
HMGB1-208ENST00000490788 ZNF394Q53GI3 561 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 TMEM201Q5SNT2 666 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 CDKAL1Q5VV42 579 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 FBXW10Q5XX13 1052 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 ACSF2Q96CM8 615 aaPredicted RBP3.55□□□□□ -1.84
HMGB1-208ENST00000490788 CCDC74BQ96LY2 380 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 FERD3LQ96RJ6 166 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 NT5C1AQ9BXI3 368 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 LRRC3Q9BY71 257 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 BRMS1Q9HCU9 246 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 ADAMTS1Q9UHI8 967 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 KCNH3Q9ULD8 1083 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 CEP131Q9UPN4 1083 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 PCDHGB7Q9Y5F8 929 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 SNX11Q9Y5W9 270 aa3.55□□□□□ -1.84
HMGB1-208ENST00000490788 PRR36Q9H6K5 1346 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 UPK3BL1B0FP48 263 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 UPK3BL2E5RIL1 263 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 EOMESO95936 686 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 IMPDH2P12268 514 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 GARTP22102 1010 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 CLCN7P51798 805 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 IKZF1Q13422 519 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 ANGEL2Q5VTE6 544 aaKnown RBP3.54□□□□□ -1.84
HMGB1-208ENST00000490788 NT5DC4Q86YG4 428 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 SLFN12Q8IYM2 578 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 REXO1Q8N1G1 1221 aaKnown RBP3.54□□□□□ -1.84
HMGB1-208ENST00000490788 POU5F2Q8N7G0 328 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 RIN3Q8TB24 985 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 SYTL4Q96C24 671 aaPredicted RBP3.54□□□□□ -1.84
HMGB1-208ENST00000490788 ASIC4Q96FT7 647 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 SPATA32Q96LK8 384 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 HEXIM2Q96MH2 286 aaKnown RBP3.54□□□□□ -1.84
HMGB1-208ENST00000490788 CRBNQ96SW2 442 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 ASCC2Q9H1I8 757 aaPredicted RBP3.54□□□□□ -1.84
HMGB1-208ENST00000490788 CCSER2Q9H7U1 834 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 KCNQ5Q9NR82 932 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 GMIPQ9P107 970 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 POLR3KQ9Y2Y1 108 aaPredicted RBP3.54□□□□□ -1.84
HMGB1-208ENST00000490788 NACADO15069 1562 aa3.54□□□□□ -1.84
HMGB1-208ENST00000490788 CHURC1-FNTBB4DL54 471 aa3.53□□□□□ -1.84
HMGB1-208ENST00000490788 CRKP46108 304 aa3.53□□□□□ -1.84
HMGB1-208ENST00000490788 RNF4P78317 190 aa3.53□□□□□ -1.84
HMGB1-208ENST00000490788 BNIP3Q12983 259 aa3.53□□□□□ -1.84
HMGB1-208ENST00000490788 CLEC16AQ2KHT3 1053 aa3.53□□□□□ -1.84
HMGB1-208ENST00000490788 ARSHQ5FYA8 562 aa3.53□□□□□ -1.84
HMGB1-208ENST00000490788 C9orf131Q5VYM1 1079 aa3.53□□□□□ -1.84
HMGB1-208ENST00000490788 C22orf34Q6ZV56 151 aa3.53□□□□□ -1.84
HMGB1-208ENST00000490788 PI4K2BQ8TCG2 481 aa3.53□□□□□ -1.84
HMGB1-208ENST00000490788 BCL7CQ8WUZ0 217 aaPredicted RBP3.53□□□□□ -1.84
HMGB1-208ENST00000490788 KIF2CQ99661 725 aa3.53□□□□□ -1.84
HMGB1-208ENST00000490788 TRIT1Q9H3H1 467 aaKnown RBP3.53□□□□□ -1.84
HMGB1-208ENST00000490788 DDX41Q9UJV9 622 aaKnown RBP3.53□□□□□ -1.84
HMGB1-208ENST00000490788 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.53□□□□□ -1.84
HMGB1-208ENST00000490788 ERCC6L2Q5T890 1561 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 BAZ1AQ9NRL2 1556 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-208ENST00000490788 UNCXA6NJT0 531 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 E9PSI1 815 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 H3BS24 57 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 ATE1O95260 518 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 ZNF865P0CJ78 1059 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-208ENST00000490788 JUNBP17275 347 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-208ENST00000490788 ERCC5P28715 1186 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-208ENST00000490788 HDLBPQ00341 1268 aaKnown RBP3.52□□□□□ -1.85
HMGB1-208ENST00000490788 CLCQ05315 142 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 ZP2Q05996 745 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 RAD51AP2Q09MP3 1159 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 GNL2Q13823 731 aaKnown RBP3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 187.2 ms