RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 GRIN3BO60391 1043 aa25.27■■□□□ 1.64
SMC4-221ENST00000489573 PPP2R5BQ15173 497 aa25.27■■□□□ 1.64
SMC4-221ENST00000489573 LARP1BQ659C4 914 aaKnown RBP25.27■■□□□ 1.64
SMC4-221ENST00000489573 FANCBQ8NB91 859 aa25.27■■□□□ 1.64
SMC4-221ENST00000489573 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.27■■□□□ 1.64
SMC4-221ENST00000489573 HERC5Q9UII4 1024 aaKnown RBP25.27■■□□□ 1.64
SMC4-221ENST00000489573 FAM196BA6NMK8 535 aa25.26■■□□□ 1.63
SMC4-221ENST00000489573 SLURP2P0DP57 97 aa25.26■■□□□ 1.63
SMC4-221ENST00000489573 TROAPQ12815 778 aa25.26■■□□□ 1.63
SMC4-221ENST00000489573 TATDN1Q6P1N9 297 aa25.26■■□□□ 1.63
SMC4-221ENST00000489573 TMEM39BQ9GZU3 492 aa25.26■■□□□ 1.63
SMC4-221ENST00000489573 STX8Q9UNK0 236 aa25.26■■□□□ 1.63
SMC4-221ENST00000489573 IGKV6D-41A0A0C4DH26 115 aa25.25■■□□□ 1.63
SMC4-221ENST00000489573 DDNO94850 711 aaPredicted RBP25.25■■□□□ 1.63
SMC4-221ENST00000489573 NOVP48745 357 aa25.25■■□□□ 1.63
SMC4-221ENST00000489573 CEP95Q96GE4 821 aa25.25■■□□□ 1.63
SMC4-221ENST00000489573 NTRK3Q16288 839 aa25.24■■□□□ 1.63
SMC4-221ENST00000489573 CERKLQ49MI3 558 aaPredicted RBP25.24■■□□□ 1.63
SMC4-221ENST00000489573 PNMA1Q8ND90 353 aa25.24■■□□□ 1.63
SMC4-221ENST00000489573 RBM28Q9NW13 759 aaKnown RBP25.24■■□□□ 1.63
SMC4-221ENST00000489573 TRPM4Q8TD43 1214 aa25.23■■□□□ 1.63
SMC4-221ENST00000489573 TMEM47Q9BQJ4 181 aa25.23■■□□□ 1.63
SMC4-221ENST00000489573 MTMR4Q9NYA4 1195 aa25.23■■□□□ 1.63
SMC4-221ENST00000489573 ORC3Q9UBD5 711 aaPredicted RBP25.23■■□□□ 1.63
SMC4-221ENST00000489573 HACL1Q9UJ83 578 aa25.23■■□□□ 1.63
SMC4-221ENST00000489573 GREB1LQ9C091 1923 aaPredicted RBP25.23■■□□□ 1.63
SMC4-221ENST00000489573 MPHOSPH10O00566 681 aaKnown RBP25.22■■□□□ 1.63
SMC4-221ENST00000489573 PPFIA3O75145 1194 aa25.22■■□□□ 1.63
SMC4-221ENST00000489573 FDPSP14324 419 aaKnown RBP25.22■■□□□ 1.63
SMC4-221ENST00000489573 IFNAR1P17181 557 aa25.22■■□□□ 1.63
SMC4-221ENST00000489573 LMOD1P29536 600 aaPredicted RBP25.22■■□□□ 1.63
SMC4-221ENST00000489573 EPS15P42566 896 aa25.22■■□□□ 1.63
SMC4-221ENST00000489573 RASA3Q14644 834 aa25.22■■□□□ 1.63
SMC4-221ENST00000489573 PPP4R3BQ5MIZ7 849 aa25.22■■□□□ 1.63
SMC4-221ENST00000489573 CTCFLQ8NI51 663 aaPredicted RBP25.22■■□□□ 1.63
SMC4-221ENST00000489573 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.22■■□□□ 1.634e-34■■■■■ 131.8
SMC4-221ENST00000489573 PGAP2Q9UHJ9 254 aa25.22■■□□□ 1.63
SMC4-221ENST00000489573 MTMR6Q9Y217 621 aa25.22■■□□□ 1.63
SMC4-221ENST00000489573 ASTN2O75129 1339 aaPredicted RBP25.22■■□□□ 1.63
SMC4-221ENST00000489573 ZSCAN22P10073 491 aaPredicted RBP25.22■■□□□ 1.63
SMC4-221ENST00000489573 TOP1P11387 765 aaKnown RBP25.22■■□□□ 1.63
SMC4-221ENST00000489573 FOXD4L5Q5VV16 416 aaPredicted RBP25.22■■□□□ 1.63
SMC4-221ENST00000489573 FOXD4L4Q8WXT5 416 aaPredicted RBP25.22■■□□□ 1.63
SMC4-221ENST00000489573 MAP3K14Q99558 947 aa25.22■■□□□ 1.63
SMC4-221ENST00000489573 STK36Q9NRP7 1315 aa25.22■■□□□ 1.63
SMC4-221ENST00000489573 VPS37CA5D8V6 355 aaPredicted RBP25.21■■□□□ 1.63
SMC4-221ENST00000489573 ZC3H4Q9UPT8 1303 aaKnown RBP25.21■■□□□ 1.63
SMC4-221ENST00000489573 TBC1D12O60347 775 aa25.2■■□□□ 1.62
SMC4-221ENST00000489573 APOBEC3FQ8IUX4 373 aaKnown RBP25.2■■□□□ 1.62
SMC4-221ENST00000489573 CDAN1Q8IWY9 1227 aa25.2■■□□□ 1.62
SMC4-221ENST00000489573 PHKBQ93100 1093 aa25.2■■□□□ 1.62
SMC4-221ENST00000489573 GBP4Q96PP9 640 aa25.2■■□□□ 1.62
SMC4-221ENST00000489573 FMNL1O95466 1100 aaPredicted RBP25.19■■□□□ 1.62
SMC4-221ENST00000489573 TTLL1O95922 423 aa25.19■■□□□ 1.62
SMC4-221ENST00000489573 KIF5BP33176 963 aa25.19■■□□□ 1.62
SMC4-221ENST00000489573 SSRP1Q08945 709 aaKnown RBP25.19■■□□□ 1.62
SMC4-221ENST00000489573 NFKBIBQ15653 356 aa25.19■■□□□ 1.62
SMC4-221ENST00000489573 DPY19L2Q6NUT2 758 aa25.19■■□□□ 1.62
SMC4-221ENST00000489573 CLEC17AQ6ZS10 378 aa25.19■■□□□ 1.62
SMC4-221ENST00000489573 TMEM179Q6ZVK1 233 aa25.19■■□□□ 1.62
SMC4-221ENST00000489573 GRM4Q14833 912 aa25.18■■□□□ 1.62
SMC4-221ENST00000489573 ABCB5Q2M3G0 1257 aa25.18■■□□□ 1.62
SMC4-221ENST00000489573 ANGEL2Q5VTE6 544 aaKnown RBP25.18■■□□□ 1.62
SMC4-221ENST00000489573 TMTC3Q6ZXV5 915 aa25.18■■□□□ 1.62
SMC4-221ENST00000489573 SLC26A6Q9BXS9 759 aa25.18■■□□□ 1.62
SMC4-221ENST00000489573 H3BQV1 296 aa25.18■■□□□ 1.62
SMC4-221ENST00000489573 GDF11O95390 407 aa25.18■■□□□ 1.62
SMC4-221ENST00000489573 F13A1P00488 732 aa25.18■■□□□ 1.62
SMC4-221ENST00000489573 IFFO2Q5TF58 517 aa25.18■■□□□ 1.62
SMC4-221ENST00000489573 CDC37L1Q7L3B6 337 aa25.18■■□□□ 1.62
SMC4-221ENST00000489573 CLEC10AQ8IUN9 316 aa25.18■■□□□ 1.62
SMC4-221ENST00000489573 TRIM22Q8IYM9 498 aa25.18■■□□□ 1.62
SMC4-221ENST00000489573 TEPSINQ96N21 525 aa25.18■■□□□ 1.62
SMC4-221ENST00000489573 ADARB2Q9NS39 739 aaKnown RBP25.18■■□□□ 1.62
SMC4-221ENST00000489573 SCAF8Q9UPN6 1271 aaKnown RBP25.18■■□□□ 1.62
SMC4-221ENST00000489573 NBPF11Q86T75 865 aa25.17■■□□□ 1.62
SMC4-221ENST00000489573 DEFB129Q9H1M3 183 aa25.17■■□□□ 1.62
SMC4-221ENST00000489573 KANSL2Q9H9L4 492 aa25.17■■□□□ 1.62
SMC4-221ENST00000489573 CABP5Q9NP86 173 aa25.17■■□□□ 1.62
SMC4-221ENST00000489573 PLEKHA8P1O95397 391 aa25.16■■□□□ 1.62
SMC4-221ENST00000489573 HIRAP54198 1017 aaPredicted RBP25.16■■□□□ 1.62
SMC4-221ENST00000489573 MAP3K10Q02779 954 aa25.16■■□□□ 1.62
SMC4-221ENST00000489573 CMTR1Q8N1G2 835 aaKnown RBP25.16■■□□□ 1.62
SMC4-221ENST00000489573 L3MBTL3Q96JM7 780 aaPredicted RBP25.16■■□□□ 1.62
SMC4-221ENST00000489573 GGA3Q9NZ52 723 aa25.16■■□□□ 1.62
SMC4-221ENST00000489573 CLIP2Q9UDT6 1046 aa25.16■■□□□ 1.62
SMC4-221ENST00000489573 GNAQP50148 359 aa25.15■■□□□ 1.62
SMC4-221ENST00000489573 FOSBP53539 338 aa25.15■■□□□ 1.62
SMC4-221ENST00000489573 RRP1BQ14684 758 aaKnown RBP25.15■■□□□ 1.62
SMC4-221ENST00000489573 SHROOM1Q2M3G4 852 aaPredicted RBP25.15■■□□□ 1.62
SMC4-221ENST00000489573 WASF1Q92558 559 aa25.15■■□□□ 1.62
SMC4-221ENST00000489573 C8orf76Q96K31 380 aa25.15■■□□□ 1.62
SMC4-221ENST00000489573 ALG1Q9BT22 464 aa25.15■■□□□ 1.62
SMC4-221ENST00000489573 RNF26Q9BY78 433 aaPredicted RBP25.15■■□□□ 1.62
SMC4-221ENST00000489573 BAG4O95429 457 aaKnown RBP25.14■■□□□ 1.62
SMC4-221ENST00000489573 GH2P01242 217 aa25.14■■□□□ 1.62
SMC4-221ENST00000489573 FUT2Q10981 343 aa25.14■■□□□ 1.62
SMC4-221ENST00000489573 SEPT2Q15019 361 aa25.14■■□□□ 1.62
SMC4-221ENST00000489573 MIGA2Q7L4E1 593 aa25.14■■□□□ 1.62
SMC4-221ENST00000489573 LRRC47Q8N1G4 583 aaKnown RBP25.14■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms