RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 UBE2Q2LH0YL09 131 aa16.3■□□□□ 0.2
CLK3-204ENST00000483723 PKN1Q16512 942 aa16.3■□□□□ 0.2
CLK3-204ENST00000483723 CTCFLQ8NI51 663 aaPredicted RBP16.3■□□□□ 0.2
CLK3-204ENST00000483723 SPATA32Q96LK8 384 aa16.3■□□□□ 0.2
CLK3-204ENST00000483723 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.3■□□□□ 0.2
CLK3-204ENST00000483723 DHX36Q9H2U1 1008 aaKnown RBP16.3■□□□□ 0.2
CLK3-204ENST00000483723 SERPINB13Q9UIV8 391 aa16.3■□□□□ 0.2
CLK3-204ENST00000483723 SIPA1L1O43166 1804 aa16.29■□□□□ 0.2
CLK3-204ENST00000483723 IGKV6D-41A0A0C4DH26 115 aa16.29■□□□□ 0.2
CLK3-204ENST00000483723 KIF28PB7ZC32 967 aa16.29■□□□□ 0.2
CLK3-204ENST00000483723 PSMD14O00487 310 aa16.29■□□□□ 0.2
CLK3-204ENST00000483723 PLEKHA8P1O95397 391 aa16.29■□□□□ 0.2
CLK3-204ENST00000483723 U2AF2P26368 475 aaKnown RBP eCLIP16.29■□□□□ 0.23e-6■■□□□ 13
CLK3-204ENST00000483723 GRM4Q14833 912 aa16.29■□□□□ 0.2
CLK3-204ENST00000483723 ZSCAN23Q3MJ62 389 aa16.29■□□□□ 0.2
CLK3-204ENST00000483723 CFAP100Q494V2 611 aa16.29■□□□□ 0.2
CLK3-204ENST00000483723 ZFPM1Q8IX07 1006 aa16.29■□□□□ 0.2
CLK3-204ENST00000483723 CMTR1Q8N1G2 835 aaKnown RBP16.29■□□□□ 0.2
CLK3-204ENST00000483723 PNMA1Q8ND90 353 aa16.29■□□□□ 0.2
CLK3-204ENST00000483723 USP28Q96RU2 1077 aa16.29■□□□□ 0.2
CLK3-204ENST00000483723 TMEM47Q9BQJ4 181 aa16.29■□□□□ 0.2
CLK3-204ENST00000483723 RBM27Q9P2N5 1060 aaKnown RBP16.29■□□□□ 0.2
CLK3-204ENST00000483723 MYH8P13535 1937 aa16.29■□□□□ 0.2
CLK3-204ENST00000483723 ENTPD3O75355 529 aa16.28■□□□□ 0.2
CLK3-204ENST00000483723 RAD17O75943 681 aa16.28■□□□□ 0.2
CLK3-204ENST00000483723 HLA-DOAP06340 250 aa16.28■□□□□ 0.2
CLK3-204ENST00000483723 KIF5BP33176 963 aa16.28■□□□□ 0.2
CLK3-204ENST00000483723 RBM5P52756 815 aaKnown RBP eCLIP16.28■□□□□ 0.2
CLK3-204ENST00000483723 NIM1KQ8IY84 436 aa16.28■□□□□ 0.2
CLK3-204ENST00000483723 SRBD1Q8N5C6 995 aaKnown RBP16.28■□□□□ 0.2
CLK3-204ENST00000483723 AGBL3Q8NEM8 1001 aa16.28■□□□□ 0.2
CLK3-204ENST00000483723 PRMT6Q96LA8 375 aaPredicted RBP16.28■□□□□ 0.2
CLK3-204ENST00000483723 RTEL1Q9NZ71 1219 aa16.28■□□□□ 0.2
CLK3-204ENST00000483723 COL2A1P02458 1487 aaPredicted RBP16.28■□□□□ 0.2
CLK3-204ENST00000483723 GREB1LQ9C091 1923 aaPredicted RBP16.28■□□□□ 0.2
CLK3-204ENST00000483723 SHMT1P34896 483 aa16.28■□□□□ 0.2
CLK3-204ENST00000483723 TRIM29Q14134 588 aa16.28■□□□□ 0.2
CLK3-204ENST00000483723 MYSM1Q5VVJ2 828 aa16.28■□□□□ 0.2
CLK3-204ENST00000483723 METTL16Q86W50 562 aaKnown RBP16.28■□□□□ 0.2
CLK3-204ENST00000483723 PGBD1Q96JS3 809 aa16.28■□□□□ 0.2
CLK3-204ENST00000483723 CNTNAP5Q8WYK1 1306 aa16.27■□□□□ 0.2
CLK3-204ENST00000483723 LTBP3Q9NS15 1303 aa16.27■□□□□ 0.2
CLK3-204ENST00000483723 NFKBIEO00221 500 aa16.27■□□□□ 0.19
CLK3-204ENST00000483723 MMP1P03956 469 aa16.27■□□□□ 0.19
CLK3-204ENST00000483723 GNAQP50148 359 aa16.27■□□□□ 0.19
CLK3-204ENST00000483723 CXCL9Q07325 125 aa16.27■□□□□ 0.19
CLK3-204ENST00000483723 SH3BP5LQ7L8J4 393 aa16.27■□□□□ 0.19
CLK3-204ENST00000483723 GAS2L3Q86XJ1 694 aa16.27■□□□□ 0.19
CLK3-204ENST00000483723 FOXP4Q8IVH2 680 aaPredicted RBP16.27■□□□□ 0.19
CLK3-204ENST00000483723 KLHL34Q8N239 644 aa16.27■□□□□ 0.19
CLK3-204ENST00000483723 CCDC82Q8N4S0 544 aa16.27■□□□□ 0.19
CLK3-204ENST00000483723 MTMR14Q8NCE2 650 aa16.27■□□□□ 0.19
CLK3-204ENST00000483723 SYAP1Q96A49 352 aaPredicted RBP16.27■□□□□ 0.19
CLK3-204ENST00000483723 TAOK3Q9H2K8 898 aa16.27■□□□□ 0.19
CLK3-204ENST00000483723 TDRD3Q9H7E2 651 aaKnown RBP16.27■□□□□ 0.19
CLK3-204ENST00000483723 V9GY48 417 aaPredicted RBP16.27■□□□□ 0.19
CLK3-204ENST00000483723 ATRNL1Q5VV63 1379 aa16.26■□□□□ 0.19
CLK3-204ENST00000483723 PALM3A6NDB9 673 aaPredicted RBP16.26■□□□□ 0.19
CLK3-204ENST00000483723 TOP1P11387 765 aaKnown RBP16.26■□□□□ 0.19
CLK3-204ENST00000483723 NASPP49321 788 aaPredicted RBP16.26■□□□□ 0.19
CLK3-204ENST00000483723 AKAP17AQ02040 695 aaKnown RBP16.26■□□□□ 0.19
CLK3-204ENST00000483723 CEP95Q96GE4 821 aa16.26■□□□□ 0.19
CLK3-204ENST00000483723 CCDC17Q96LX7 622 aa16.26■□□□□ 0.19
CLK3-204ENST00000483723 POLR3EQ9NVU0 708 aa16.26■□□□□ 0.19
CLK3-204ENST00000483723 PI4KBQ9UBF8 816 aa16.26■□□□□ 0.19
CLK3-204ENST00000483723 MAD2L2Q9UI95 211 aa16.26■□□□□ 0.19
CLK3-204ENST00000483723 HDAC9Q9UKV0 1011 aa16.26■□□□□ 0.19
CLK3-204ENST00000483723 DDTLA6NHG4 134 aaPredicted RBP16.25■□□□□ 0.19
CLK3-204ENST00000483723 SPDYE2BA6NHP3 402 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 SPDYE6P0CI01 402 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 AKR1B1P15121 316 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 CACNB3P54284 484 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 SHISA4Q96DD7 197 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 FOXP1Q9H334 677 aaPredicted RBP16.25■□□□□ 0.19
CLK3-204ENST00000483723 MTMR4Q9NYA4 1195 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 ARFGEF1Q9Y6D6 1849 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 GOLGA6L3A6NEY3 463 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 YEATS4O95619 227 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 SMARCA1P28370 1054 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 MMP14P50281 582 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 ZBED3Q96IU2 234 aaPredicted RBP16.25■□□□□ 0.19
CLK3-204ENST00000483723 LZTS2Q9BRK4 669 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 DNAJC18Q9H819 358 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 STX8Q9UNK0 236 aa16.25■□□□□ 0.19
CLK3-204ENST00000483723 TCP10Q12799 353 aa16.24■□□□□ 0.19
CLK3-204ENST00000483723 SAFBQ15424 915 aaKnown RBP eCLIP16.24■□□□□ 0.19
CLK3-204ENST00000483723 TATDN1Q6P1N9 297 aa16.24■□□□□ 0.19
CLK3-204ENST00000483723 STAG2Q8N3U4 1231 aa16.24■□□□□ 0.19
CLK3-204ENST00000483723 LINC00301Q8NCQ3 95 aa16.24■□□□□ 0.19
CLK3-204ENST00000483723 PHF20Q9BVI0 1012 aa16.24■□□□□ 0.19
CLK3-204ENST00000483723 FTOQ9C0B1 505 aaKnown RBP eCLIP16.24■□□□□ 0.19
CLK3-204ENST00000483723 KCNJ14Q9UNX9 436 aa16.24■□□□□ 0.19
CLK3-204ENST00000483723 ZBTB12Q9Y330 459 aaPredicted RBP16.24■□□□□ 0.19
CLK3-204ENST00000483723 BTBD18B2RXH4 712 aa16.23■□□□□ 0.19
CLK3-204ENST00000483723 XBP1P17861 261 aa16.23■□□□□ 0.19
CLK3-204ENST00000483723 DLGAP5Q15398 846 aa16.23■□□□□ 0.19
CLK3-204ENST00000483723 PFKFB3Q16875 520 aaPredicted RBP16.23■□□□□ 0.19
CLK3-204ENST00000483723 SLC35G1Q2M3R5 365 aa16.23■□□□□ 0.19
CLK3-204ENST00000483723 CCDC183Q5T5S1 534 aa16.23■□□□□ 0.19
CLK3-204ENST00000483723 L1TD1Q5T7N2 865 aaKnown RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms