RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SYDE1Q6ZW31 735 aaPredicted RBP7.35□□□□□ -1.23
CCDC88A-210ENST00000468534 SND1Q7KZF4 910 aaKnown RBP eCLIP7.35□□□□□ -1.23
CCDC88A-210ENST00000468534 TTC6Q86TZ1 520 aa7.35□□□□□ -1.23
CCDC88A-210ENST00000468534 ACSF2Q96CM8 615 aaPredicted RBP7.35□□□□□ -1.23
CCDC88A-210ENST00000468534 COX4I2Q96KJ9 171 aa7.35□□□□□ -1.23
CCDC88A-210ENST00000468534 TACC3Q9Y6A5 838 aa7.35□□□□□ -1.23
CCDC88A-210ENST00000468534 PDIA4P13667 645 aaKnown RBP7.34□□□□□ -1.23
CCDC88A-210ENST00000468534 HK2P52789 917 aa7.34□□□□□ -1.23
CCDC88A-210ENST00000468534 XPCQ01831 940 aaPredicted RBP7.34□□□□□ -1.23
CCDC88A-210ENST00000468534 TAF1CQ15572 869 aaPredicted RBP7.34□□□□□ -1.23
CCDC88A-210ENST00000468534 LCE1DQ5T752 114 aa7.34□□□□□ -1.23
CCDC88A-210ENST00000468534 CREG2Q8IUH2 290 aa7.34□□□□□ -1.23
CCDC88A-210ENST00000468534 MCATQ8IVS2 390 aaKnown RBP7.34□□□□□ -1.23
CCDC88A-210ENST00000468534 CCDC120Q96HB5 630 aa7.34□□□□□ -1.23
CCDC88A-210ENST00000468534 UPK3BL1B0FP48 263 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 UPK3BL2E5RIL1 263 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 BPNT1O95861 308 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 ESR1P03372 595 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 RLBP1P12271 317 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 PLCG1P19174 1290 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 RAP1GAPP47736 663 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 ERVFC1P60507 584 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 DAB2P98082 770 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 BNC2Q6ZN30 1099 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 PHC3Q8NDX5 983 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 FAM13CQ8NE31 585 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 DNAJB8Q8NHS0 232 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 Q96M66 194 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 NSUN3Q9H649 340 aaKnown RBP7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 KCNK12Q9HB15 430 aa7.33□□□□□ -1.24
CCDC88A-210ENST00000468534 RAC2P15153 192 aa7.32□□□□□ -1.24
CCDC88A-210ENST00000468534 TPP2P29144 1249 aaPredicted RBP7.32□□□□□ -1.24
CCDC88A-210ENST00000468534 DIEXFQ68CQ4 756 aaKnown RBP7.32□□□□□ -1.24
CCDC88A-210ENST00000468534 SPOCD1Q6ZMY3 1216 aa7.32□□□□□ -1.24
CCDC88A-210ENST00000468534 ABHD4Q8TB40 342 aa7.32□□□□□ -1.24
CCDC88A-210ENST00000468534 PIWIL2Q8TC59 973 aaKnown RBP7.32□□□□□ -1.24
CCDC88A-210ENST00000468534 TMEM59LQ9UK28 342 aa7.32□□□□□ -1.24
CCDC88A-210ENST00000468534 ADAM30Q9UKF2 790 aa7.32□□□□□ -1.24
CCDC88A-210ENST00000468534 CEP131Q9UPN4 1083 aa7.32□□□□□ -1.24
CCDC88A-210ENST00000468534 CTSHP09668 335 aa7.31□□□□□ -1.24
CCDC88A-210ENST00000468534 TMPRSS7Q7RTY8 843 aa7.31□□□□□ -1.24
CCDC88A-210ENST00000468534 PUS7Q96PZ0 661 aaKnown RBP7.31□□□□□ -1.24
CCDC88A-210ENST00000468534 PPP1R16BQ96T49 567 aa7.31□□□□□ -1.24
CCDC88A-210ENST00000468534 NOC4LQ9BVI4 516 aaKnown RBP7.31□□□□□ -1.24
CCDC88A-210ENST00000468534 ADAMTS10Q9H324 1103 aa7.31□□□□□ -1.24
CCDC88A-210ENST00000468534 ST13P50502 369 aaKnown RBP7.3□□□□□ -1.24
CCDC88A-210ENST00000468534 BHLHE22Q8NFJ8 381 aaPredicted RBP7.3□□□□□ -1.24
CCDC88A-210ENST00000468534 PPP1R13LQ8WUF5 828 aa7.3□□□□□ -1.24
CCDC88A-210ENST00000468534 CYB5D2Q8WUJ1 264 aa7.3□□□□□ -1.24
CCDC88A-210ENST00000468534 MYLIPQ8WY64 445 aa7.3□□□□□ -1.24
CCDC88A-210ENST00000468534 DUSP15Q9H1R2 295 aaPredicted RBP7.3□□□□□ -1.24
CCDC88A-210ENST00000468534 TRIT1Q9H3H1 467 aaKnown RBP7.3□□□□□ -1.24
CCDC88A-210ENST00000468534 KLHL3Q9UH77 587 aa7.3□□□□□ -1.24
CCDC88A-210ENST00000468534 DUSP13Q9UII6 198 aa7.3□□□□□ -1.24
CCDC88A-210ENST00000468534 LRRN2O75325 713 aa7.29□□□□□ -1.24
CCDC88A-210ENST00000468534 TSPAN15O95858 294 aa7.29□□□□□ -1.24
CCDC88A-210ENST00000468534 F13A1P00488 732 aa7.29□□□□□ -1.24
CCDC88A-210ENST00000468534 PF4P02776 101 aa7.29□□□□□ -1.24
CCDC88A-210ENST00000468534 TRHRP34981 398 aaPredicted RBP7.29□□□□□ -1.24
CCDC88A-210ENST00000468534 TNNI2P48788 182 aa7.29□□□□□ -1.24
CCDC88A-210ENST00000468534 YARSP54577 528 aaKnown RBP7.29□□□□□ -1.24
CCDC88A-210ENST00000468534 CAMK2GQ13555 558 aaPredicted RBP7.29□□□□□ -1.24
CCDC88A-210ENST00000468534 FBLN7Q53RD9 439 aa7.29□□□□□ -1.24
CCDC88A-210ENST00000468534 FBXO15Q8NCQ5 510 aaPredicted RBP7.29□□□□□ -1.24
CCDC88A-210ENST00000468534 TOX2Q96NM4 488 aa7.29□□□□□ -1.24
CCDC88A-210ENST00000468534 GRIN3BO60391 1043 aa7.28□□□□□ -1.24
CCDC88A-210ENST00000468534 C1QTNF9P0C862 333 aa7.28□□□□□ -1.24
CCDC88A-210ENST00000468534 CFPP27918 469 aa7.28□□□□□ -1.24
CCDC88A-210ENST00000468534 LTKP29376 864 aa7.28□□□□□ -1.24
CCDC88A-210ENST00000468534 EGR3Q06889 387 aa7.28□□□□□ -1.24
CCDC88A-210ENST00000468534 TMC4Q7Z404 712 aa7.28□□□□□ -1.24
CCDC88A-210ENST00000468534 ANKLE2Q86XL3 938 aa7.28□□□□□ -1.24
CCDC88A-210ENST00000468534 DTWD2Q8NBA8 298 aa7.28□□□□□ -1.24
CCDC88A-210ENST00000468534 EPB41L4BQ9H329 900 aa7.28□□□□□ -1.24
CCDC88A-210ENST00000468534 DCP1AQ9NPI6 582 aaPredicted RBP7.28□□□□□ -1.24
CCDC88A-210ENST00000468534 GPATCH2Q9NW75 528 aa7.28□□□□□ -1.24
CCDC88A-210ENST00000468534 KCNH3Q9ULD8 1083 aa7.28□□□□□ -1.24
CCDC88A-210ENST00000468534 NFIBO00712 420 aa7.27□□□□□ -1.25
CCDC88A-210ENST00000468534 CILPO75339 1184 aa7.27□□□□□ -1.25
CCDC88A-210ENST00000468534 GBP2P32456 591 aaPredicted RBP7.27□□□□□ -1.25
CCDC88A-210ENST00000468534 TAGLNQ01995 201 aaKnown RBP7.27□□□□□ -1.25
CCDC88A-210ENST00000468534 FAM160A1Q05DH4 1040 aa7.27□□□□□ -1.25
CCDC88A-210ENST00000468534 DNAJC14Q6Y2X3 702 aaPredicted RBP7.27□□□□□ -1.25
CCDC88A-210ENST00000468534 LRRC56Q8IYG6 542 aaPredicted RBP7.27□□□□□ -1.25
CCDC88A-210ENST00000468534 CRELD1Q96HD1 420 aa7.27□□□□□ -1.25
CCDC88A-210ENST00000468534 C19orf44Q9H6X5 657 aa7.27□□□□□ -1.25
CCDC88A-210ENST00000468534 MRS2Q9HD23 443 aa7.27□□□□□ -1.25
CCDC88A-210ENST00000468534 VTI1BQ9UEU0 232 aa7.27□□□□□ -1.25
CCDC88A-210ENST00000468534 USP31Q70CQ4 1352 aa7.27□□□□□ -1.25
CCDC88A-210ENST00000468534 FAM221AA4D161 298 aa7.26□□□□□ -1.25
CCDC88A-210ENST00000468534 MINDY4BA8MYZ0 360 aa7.26□□□□□ -1.25
CCDC88A-210ENST00000468534 SORBS3O60504 671 aa7.26□□□□□ -1.25
CCDC88A-210ENST00000468534 LMNB2Q03252 620 aa7.26□□□□□ -1.25
CCDC88A-210ENST00000468534 GAB4Q2WGN9 574 aa7.26□□□□□ -1.25
CCDC88A-210ENST00000468534 LCE4AQ5TA78 99 aa7.26□□□□□ -1.25
CCDC88A-210ENST00000468534 CCDC84Q86UT8 332 aaPredicted RBP7.26□□□□□ -1.25
CCDC88A-210ENST00000468534 TSPYL5Q86VY4 417 aaPredicted RBP7.26□□□□□ -1.25
CCDC88A-210ENST00000468534 CILP2Q8IUL8 1156 aa7.26□□□□□ -1.25
CCDC88A-210ENST00000468534 RELL1Q8IUW5 271 aa7.26□□□□□ -1.25
CCDC88A-210ENST00000468534 BAHD1Q8TBE0 780 aaPredicted RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms