RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 PROCA1Q8NCQ7 364 aaPredicted RBP17.25■□□□□ 0.35
SQSTM1-205ENST00000464493 CRHR2Q13324 411 aa17.24■□□□□ 0.35
SQSTM1-205ENST00000464493 TAF1CQ15572 869 aaPredicted RBP17.24■□□□□ 0.35
SQSTM1-205ENST00000464493 ACER1Q8TDN7 264 aa17.24■□□□□ 0.35
SQSTM1-205ENST00000464493 R3HDMLQ9H3Y0 253 aa17.24■□□□□ 0.35
SQSTM1-205ENST00000464493 ZFYVE28Q9HCC9 887 aa17.24■□□□□ 0.35
SQSTM1-205ENST00000464493 TMOD4Q9NZQ9 345 aa17.24■□□□□ 0.35
SQSTM1-205ENST00000464493 CTNNA3Q9UI47 895 aa17.24■□□□□ 0.35
SQSTM1-205ENST00000464493 ZNF213O14771 459 aa17.23■□□□□ 0.35
SQSTM1-205ENST00000464493 HAND2P61296 217 aa17.23■□□□□ 0.35
SQSTM1-205ENST00000464493 DGKZQ13574 1117 aa17.23■□□□□ 0.35
SQSTM1-205ENST00000464493 USP17L2Q6R6M4 530 aa17.23■□□□□ 0.35
SQSTM1-205ENST00000464493 FEZ1Q99689 392 aa17.23■□□□□ 0.35
SQSTM1-205ENST00000464493 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.23■□□□□ 0.35
SQSTM1-205ENST00000464493 KANSL2Q9H9L4 492 aa17.23■□□□□ 0.35
SQSTM1-205ENST00000464493 INCENPQ9NQS7 918 aa17.23■□□□□ 0.35
SQSTM1-205ENST00000464493 AGTPBP1Q9UPW5 1226 aa17.23■□□□□ 0.35
SQSTM1-205ENST00000464493 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.23■□□□□ 0.355e-7■■■□□ 16.2
SQSTM1-205ENST00000464493 FGRP09769 529 aa17.22■□□□□ 0.35
SQSTM1-205ENST00000464493 USP14P54578 494 aa17.22■□□□□ 0.35
SQSTM1-205ENST00000464493 ICA1Q05084 483 aa17.22■□□□□ 0.35
SQSTM1-205ENST00000464493 TREML2Q5T2D2 321 aa17.22■□□□□ 0.35
SQSTM1-205ENST00000464493 CASC1Q6TDU7 716 aa17.22■□□□□ 0.35
SQSTM1-205ENST00000464493 SIAH1Q8IUQ4 282 aa17.22■□□□□ 0.35
SQSTM1-205ENST00000464493 KIAA1683Q9H0B3 1180 aa17.22■□□□□ 0.35
SQSTM1-205ENST00000464493 ARHGEF10LQ9HCE6 1279 aa17.22■□□□□ 0.35
SQSTM1-205ENST00000464493 PRDM10Q9NQV6 1147 aa17.22■□□□□ 0.35
SQSTM1-205ENST00000464493 EMILIN3Q9NT22 766 aa17.22■□□□□ 0.35
SQSTM1-205ENST00000464493 SLC45A1Q9Y2W3 748 aa17.22■□□□□ 0.35
SQSTM1-205ENST00000464493 TACC3Q9Y6A5 838 aa17.22■□□□□ 0.35
SQSTM1-205ENST00000464493 A0A1W2PRG0 241 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 GPR25O00155 361 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 ORC4O43929 436 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 CDC45O75419 566 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 TSPY3P0CV98 308 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 TSPY8P0CW00 308 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 EEF2P13639 858 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 TFAP4Q01664 338 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 PTH1RQ03431 593 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 PABPC4Q13310 644 aaKnown RBP eCLIP17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 ZYXQ15942 572 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 IMMTQ16891 758 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 NOM1Q5C9Z4 860 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 FAM47AQ5JRC9 791 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 AKNAD1Q5T1N1 836 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 MFSD6Q6ZSS7 791 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 KIAA1211Q6ZU35 1233 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 CLEC10AQ8IUN9 316 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 ESYT1Q9BSJ8 1104 aa17.21■□□□□ 0.35
SQSTM1-205ENST00000464493 LOC285556D6RIA3 1793 aa17.2■□□□□ 0.34
SQSTM1-205ENST00000464493 RANBP6O60518 1105 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-205ENST00000464493 TLR2O60603 784 aa17.2■□□□□ 0.34
SQSTM1-205ENST00000464493 PCP11498 1178 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-205ENST00000464493 ATP2B2Q01814 1243 aa17.2■□□□□ 0.34
SQSTM1-205ENST00000464493 NEDD1Q8NHV4 660 aa17.2■□□□□ 0.34
SQSTM1-205ENST00000464493 PARK7Q99497 189 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-205ENST00000464493 NBPF3Q9H094 633 aa17.2■□□□□ 0.34
SQSTM1-205ENST00000464493 RNF41Q9H4P4 317 aaPredicted RBP17.2■□□□□ 0.34
SQSTM1-205ENST00000464493 SH2D4AQ9H788 454 aa17.2■□□□□ 0.34
SQSTM1-205ENST00000464493 TOMM22Q9NS69 142 aa17.2■□□□□ 0.34
SQSTM1-205ENST00000464493 TMX2Q9Y320 296 aa17.2■□□□□ 0.34
SQSTM1-205ENST00000464493 CASP8AP2Q9UKL3 1982 aa17.2■□□□□ 0.34
SQSTM1-205ENST00000464493 IGKV6D-41A0A0C4DH26 115 aa17.19■□□□□ 0.34
SQSTM1-205ENST00000464493 TSPY2A6NKD2 308 aa17.19■□□□□ 0.34
SQSTM1-205ENST00000464493 CYP2C8P10632 490 aa17.19■□□□□ 0.34
SQSTM1-205ENST00000464493 OSBPP22059 807 aa17.19■□□□□ 0.34
SQSTM1-205ENST00000464493 RRP12Q5JTH9 1297 aaKnown RBP17.19■□□□□ 0.34
SQSTM1-205ENST00000464493 TBC1D10CQ8IV04 446 aa17.19■□□□□ 0.34
SQSTM1-205ENST00000464493 ZNF296Q8WUU4 475 aaPredicted RBP17.19■□□□□ 0.34
SQSTM1-205ENST00000464493 STAG1Q8WVM7 1258 aa17.19■□□□□ 0.34
SQSTM1-205ENST00000464493 MAP4K1Q92918 833 aa17.19■□□□□ 0.34
SQSTM1-205ENST00000464493 C12orf42Q96LP6 360 aa17.19■□□□□ 0.34
SQSTM1-205ENST00000464493 PNMA3Q9UL41 463 aa17.19■□□□□ 0.34
SQSTM1-205ENST00000464493 U3KPZ7 1027 aaPredicted RBP17.19■□□□□ 0.34
SQSTM1-205ENST00000464493 GREB1LQ9C091 1923 aaPredicted RBP17.19■□□□□ 0.34
SQSTM1-205ENST00000464493 PLIN4Q96Q06 1357 aa17.18■□□□□ 0.34
SQSTM1-205ENST00000464493 HOXA7P31268 230 aaPredicted RBP17.18■□□□□ 0.34
SQSTM1-205ENST00000464493 CEP95Q96GE4 821 aa17.18■□□□□ 0.34
SQSTM1-205ENST00000464493 MTMR4Q9NYA4 1195 aa17.18■□□□□ 0.34
SQSTM1-205ENST00000464493 NYAP2Q9P242 653 aa17.18■□□□□ 0.34
SQSTM1-205ENST00000464493 LAMA4Q16363 1823 aa17.17■□□□□ 0.34
SQSTM1-205ENST00000464493 FKTNO75072 461 aa17.17■□□□□ 0.34
SQSTM1-205ENST00000464493 VCAM1P19320 739 aa17.17■□□□□ 0.34
SQSTM1-205ENST00000464493 C17orf99Q6UX52 265 aa17.17■□□□□ 0.34
SQSTM1-205ENST00000464493 ASCC2Q9H1I8 757 aaPredicted RBP17.17■□□□□ 0.34
SQSTM1-205ENST00000464493 VCPKMTQ9H867 229 aa17.17■□□□□ 0.34
SQSTM1-205ENST00000464493 CLIP2Q9UDT6 1046 aa17.17■□□□□ 0.34
SQSTM1-205ENST00000464493 USP17L15C9J2P7 530 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 USP17L13C9JLJ4 530 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 USP17L11C9JVI0 530 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 USP17L18D6R9N7 530 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 USP17L22D6RA61 530 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 USP17L17D6RBQ6 530 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 USP17L19D6RCP7 530 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 USP17L20D6RJB6 530 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 TTLL1O95922 423 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 IRX3P78415 501 aaPredicted RBP17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 SP3Q02447 781 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 USP17L24Q0WX57 530 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 PPP4R3BQ5MIZ7 849 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms