RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 SMC5Q8IY18 1101 aa19.34■□□□□ 0.69
COL7A1-203ENST00000459756 SLC44A5Q8NCS7 719 aa19.34■□□□□ 0.69
COL7A1-203ENST00000459756 RAET1EQ8TD07 263 aa19.34■□□□□ 0.69
COL7A1-203ENST00000459756 FSD1Q9BTV5 496 aa19.34■□□□□ 0.69
COL7A1-203ENST00000459756 ARPP21Q9UBL0 812 aaPredicted RBP19.34■□□□□ 0.69
COL7A1-203ENST00000459756 SUPT16HQ9Y5B9 1047 aaKnown RBP19.34■□□□□ 0.69
COL7A1-203ENST00000459756 CYP2D7A0A087X1C5 515 aa19.33■□□□□ 0.68
COL7A1-203ENST00000459756 GSG1L2A8MUP6 293 aa19.33■□□□□ 0.68
COL7A1-203ENST00000459756 TNPO2O14787 897 aaKnown RBP19.33■□□□□ 0.68
COL7A1-203ENST00000459756 GPAA1O43292 621 aa19.33■□□□□ 0.68
COL7A1-203ENST00000459756 C16orf86Q6ZW13 317 aa19.33■□□□□ 0.68
COL7A1-203ENST00000459756 ACER1Q8TDN7 264 aa19.33■□□□□ 0.68
COL7A1-203ENST00000459756 CCDC17Q96LX7 622 aa19.33■□□□□ 0.68
COL7A1-203ENST00000459756 TNRC18O15417 2968 aaPredicted RBP19.33■□□□□ 0.68
COL7A1-203ENST00000459756 RBBP6Q7Z6E9 1792 aaKnown RBP19.32■□□□□ 0.68
COL7A1-203ENST00000459756 CDK8P49336 464 aa19.32■□□□□ 0.68
COL7A1-203ENST00000459756 PDE1AP54750 535 aa19.32■□□□□ 0.68
COL7A1-203ENST00000459756 HERVK_113P62684 666 aa19.32■□□□□ 0.68
COL7A1-203ENST00000459756 PRKCZQ05513 592 aa19.32■□□□□ 0.68
COL7A1-203ENST00000459756 ZYXQ15942 572 aaKnown RBP19.32■□□□□ 0.68
COL7A1-203ENST00000459756 SBK1Q52WX2 424 aa19.32■□□□□ 0.68
COL7A1-203ENST00000459756 GTF3C2Q8WUA4 911 aaPredicted RBP19.32■□□□□ 0.68
COL7A1-203ENST00000459756 P2RX7Q99572 595 aaKnown RBP19.32■□□□□ 0.68
COL7A1-203ENST00000459756 MORF4L1Q9UBU8 362 aa19.32■□□□□ 0.68
COL7A1-203ENST00000459756 BRCA2P51587 3418 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 USP17L15C9J2P7 530 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 USP17L13C9JLJ4 530 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 USP17L11C9JVI0 530 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 USP17L18D6R9N7 530 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 USP17L22D6RA61 530 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 USP17L17D6RBQ6 530 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 USP17L19D6RCP7 530 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 USP17L20D6RJB6 530 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 M0R2C6 588 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 USP17L24Q0WX57 530 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 SH3TC2Q8TF17 1288 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 COA7Q96BR5 231 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 TMEM106CQ9BVX2 250 aa19.31■□□□□ 0.68
COL7A1-203ENST00000459756 SMIM22K7EJ46 135 aa19.3■□□□□ 0.68
COL7A1-203ENST00000459756 AKR1B1P15121 316 aa19.3■□□□□ 0.68
COL7A1-203ENST00000459756 VCAM1P19320 739 aa19.3■□□□□ 0.68
COL7A1-203ENST00000459756 GRK4P32298 578 aa19.3■□□□□ 0.68
COL7A1-203ENST00000459756 ZMYM1Q5SVZ6 1142 aa19.3■□□□□ 0.68
COL7A1-203ENST00000459756 EVI5LQ96CN4 794 aa19.3■□□□□ 0.68
COL7A1-203ENST00000459756 LNPKQ9C0E8 428 aa19.3■□□□□ 0.68
COL7A1-203ENST00000459756 GABRQQ9UN88 632 aa19.3■□□□□ 0.68
COL7A1-203ENST00000459756 POTEFA5A3E0 1075 aa19.29■□□□□ 0.68
COL7A1-203ENST00000459756 IGHDP01880 384 aa19.29■□□□□ 0.68
COL7A1-203ENST00000459756 APPP05067 770 aa19.29■□□□□ 0.68
COL7A1-203ENST00000459756 FLT3LGP49771 235 aa19.29■□□□□ 0.68
COL7A1-203ENST00000459756 B4GALNT3Q6L9W6 998 aa19.29■□□□□ 0.68
COL7A1-203ENST00000459756 SLAIN1Q8ND83 568 aa19.29■□□□□ 0.68
COL7A1-203ENST00000459756 GPRC5AQ8NFJ5 357 aa19.29■□□□□ 0.68
COL7A1-203ENST00000459756 KIAA0100Q14667 2235 aaKnown RBP19.29■□□□□ 0.68
COL7A1-203ENST00000459756 A0A1W2PRG0 241 aa19.28■□□□□ 0.68
COL7A1-203ENST00000459756 PATL2C9JE40 543 aaKnown RBP19.28■□□□□ 0.68
COL7A1-203ENST00000459756 TDO2P48775 406 aa19.28■□□□□ 0.68
COL7A1-203ENST00000459756 NUCB1Q02818 461 aa19.28■□□□□ 0.68
COL7A1-203ENST00000459756 ICA1Q05084 483 aa19.28■□□□□ 0.68
COL7A1-203ENST00000459756 IRF5Q13568 498 aa19.28■□□□□ 0.68
COL7A1-203ENST00000459756 CATSPERGQ6ZRH7 1159 aa19.28■□□□□ 0.68
COL7A1-203ENST00000459756 CHD1LQ86WJ1 897 aa19.28■□□□□ 0.68
COL7A1-203ENST00000459756 TICAM2Q86XR7 235 aa19.28■□□□□ 0.68
COL7A1-203ENST00000459756 SEC62Q99442 399 aaKnown RBP19.28■□□□□ 0.68
COL7A1-203ENST00000459756 NACAP1Q9BZK3 213 aa19.28■□□□□ 0.68
COL7A1-203ENST00000459756 SH2D4AQ9H788 454 aa19.28■□□□□ 0.68
COL7A1-203ENST00000459756 ARHGEF10LQ9HCE6 1279 aa19.28■□□□□ 0.68
COL7A1-203ENST00000459756 EPB41L4AQ9HCS5 686 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-203ENST00000459756 RBPJLQ9UBG7 517 aa19.28■□□□□ 0.68
COL7A1-203ENST00000459756 ROBO3Q96MS0 1386 aa19.28■□□□□ 0.68
COL7A1-203ENST00000459756 MINDY4BA8MYZ0 360 aa19.27■□□□□ 0.68
COL7A1-203ENST00000459756 RPAP3Q9H6T3 665 aaPredicted RBP19.27■□□□□ 0.68
COL7A1-203ENST00000459756 KANSL2Q9H9L4 492 aa19.27■□□□□ 0.68
COL7A1-203ENST00000459756 TXNRD2Q9NNW7 524 aa19.27■□□□□ 0.68
COL7A1-203ENST00000459756 DOCK3Q8IZD9 2030 aa19.26■□□□□ 0.67
COL7A1-203ENST00000459756 ADCY3O60266 1144 aa19.26■□□□□ 0.67
COL7A1-203ENST00000459756 ERVK-9P63128 1117 aa19.26■□□□□ 0.67
COL7A1-203ENST00000459756 ERVK-24P63145 666 aa19.26■□□□□ 0.67
COL7A1-203ENST00000459756 SIAH1Q8IUQ4 282 aa19.26■□□□□ 0.67
COL7A1-203ENST00000459756 IFNL3Q8IZI9 196 aa19.26■□□□□ 0.67
COL7A1-203ENST00000459756 PXYLP1Q8TE99 480 aa19.26■□□□□ 0.67
COL7A1-203ENST00000459756 LPAR1Q92633 364 aa19.26■□□□□ 0.67
COL7A1-203ENST00000459756 MKNK2Q9HBH9 465 aa19.26■□□□□ 0.67
COL7A1-203ENST00000459756 ZNF287Q9HBT7 754 aa19.26■□□□□ 0.67
COL7A1-203ENST00000459756 BIN2Q9UBW5 565 aaPredicted RBP19.26■□□□□ 0.67
COL7A1-203ENST00000459756 TMX2Q9Y320 296 aa19.26■□□□□ 0.67
COL7A1-203ENST00000459756 RABGAP1Q9Y3P9 1069 aa19.26■□□□□ 0.67
COL7A1-203ENST00000459756 MYCP01106 439 aaPredicted RBP19.25■□□□□ 0.67
COL7A1-203ENST00000459756 MAPK4P31152 587 aa19.25■□□□□ 0.67
COL7A1-203ENST00000459756 UBXN2AP68543 259 aa19.25■□□□□ 0.67
COL7A1-203ENST00000459756 LBX2Q6XYB7 198 aa19.25■□□□□ 0.67
COL7A1-203ENST00000459756 CLEC10AQ8IUN9 316 aa19.25■□□□□ 0.67
COL7A1-203ENST00000459756 PAGR1Q9BTK6 254 aa19.25■□□□□ 0.67
COL7A1-203ENST00000459756 MKI67P46013 3256 aaKnown RBP19.25■□□□□ 0.67
COL7A1-203ENST00000459756 EN2P19622 333 aaPredicted RBP19.24■□□□□ 0.67
COL7A1-203ENST00000459756 RASA1P20936 1047 aa19.24■□□□□ 0.67
COL7A1-203ENST00000459756 POTEEQ6S8J3 1075 aa19.24■□□□□ 0.67
COL7A1-203ENST00000459756 CCAR1Q8IX12 1150 aaKnown RBP19.24■□□□□ 0.67
COL7A1-203ENST00000459756 VCPKMTQ9H867 229 aa19.24■□□□□ 0.67
COL7A1-203ENST00000459756 HELLSQ9NRZ9 838 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms