RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 SYMPKQ92797 1274 aaKnown RBP13.47□□□□□ -0.25
CD44-209ENST00000433892 AATFQ9NY61 560 aaKnown RBP eCLIP13.47□□□□□ -0.25
CD44-209ENST00000433892 PHLPP1O60346 1717 aa13.47□□□□□ -0.25
CD44-209ENST00000433892 MYH14Q7Z406 1995 aaKnown RBP13.47□□□□□ -0.25
CD44-209ENST00000433892 VWA3AA6NCI4 1184 aa13.47□□□□□ -0.25
CD44-209ENST00000433892 PRPF3O43395 683 aaKnown RBP13.47□□□□□ -0.25
CD44-209ENST00000433892 ADAMTS2O95450 1211 aa13.47□□□□□ -0.25
CD44-209ENST00000433892 PLCD1P51178 756 aa13.47□□□□□ -0.25
CD44-209ENST00000433892 TROAPQ12815 778 aa13.47□□□□□ -0.25
CD44-209ENST00000433892 CAVIN4Q5BKX8 364 aa13.47□□□□□ -0.25
CD44-209ENST00000433892 KLHL10Q6JEL2 608 aa13.47□□□□□ -0.25
CD44-209ENST00000433892 TOGARAM2Q6ZUX3 1019 aa13.47□□□□□ -0.25
CD44-209ENST00000433892 FCHSD1Q86WN1 690 aa13.47□□□□□ -0.25
CD44-209ENST00000433892 IQCA1Q86XH1 822 aa13.47□□□□□ -0.25
CD44-209ENST00000433892 MARCH10Q8NA82 808 aaPredicted RBP13.47□□□□□ -0.25
CD44-209ENST00000433892 ZNF446Q9NWS9 450 aa13.47□□□□□ -0.25
CD44-209ENST00000433892 MYH2Q9UKX2 1941 aa13.47□□□□□ -0.25
CD44-209ENST00000433892 CICQ96RK0 1608 aaPredicted RBP13.46□□□□□ -0.25
CD44-209ENST00000433892 USP17L12C9JPN9 530 aa13.46□□□□□ -0.25
CD44-209ENST00000433892 USP17L21D6R901 530 aa13.46□□□□□ -0.25
CD44-209ENST00000433892 STX17P56962 302 aa13.46□□□□□ -0.25
CD44-209ENST00000433892 UBE4AQ14139 1066 aa13.46□□□□□ -0.25
CD44-209ENST00000433892 ZNF174Q15697 407 aa13.46□□□□□ -0.25
CD44-209ENST00000433892 CTR9Q6PD62 1173 aa13.46□□□□□ -0.25
CD44-209ENST00000433892 MYH6P13533 1939 aa13.46□□□□□ -0.25
CD44-209ENST00000433892 STX10O60499 249 aa13.46□□□□□ -0.26
CD44-209ENST00000433892 NMT2O60551 498 aa13.46□□□□□ -0.26
CD44-209ENST00000433892 SLFN14P0C7P3 912 aa13.46□□□□□ -0.26
CD44-209ENST00000433892 CD44P16070 742 aaKnown RBP13.46□□□□□ -0.26
CD44-209ENST00000433892 H2AFXP16104 143 aaPredicted RBP13.46□□□□□ -0.26
CD44-209ENST00000433892 NR1I3Q14994 352 aa13.46□□□□□ -0.26
CD44-209ENST00000433892 ARHGAP29Q52LW3 1261 aa13.46□□□□□ -0.26
CD44-209ENST00000433892 SMYD4Q8IYR2 804 aaPredicted RBP13.46□□□□□ -0.26
CD44-209ENST00000433892 PAGE5Q96GU1 130 aa13.46□□□□□ -0.26
CD44-209ENST00000433892 FAM84BQ96KN1 310 aaPredicted RBP13.46□□□□□ -0.26
CD44-209ENST00000433892 NOL10Q9BSC4 688 aaKnown RBP13.46□□□□□ -0.26
CD44-209ENST00000433892 BRIP1Q9BX63 1249 aa13.46□□□□□ -0.26
CD44-209ENST00000433892 MINPP1Q9UNW1 487 aa13.46□□□□□ -0.26
CD44-209ENST00000433892 ZNF652Q9Y2D9 606 aa13.46□□□□□ -0.26
CD44-209ENST00000433892 BAZ2AQ9UIF9 1905 aaKnown RBP13.46□□□□□ -0.26
CD44-209ENST00000433892 ERCC5P28715 1186 aaPredicted RBP13.45□□□□□ -0.26
CD44-209ENST00000433892 BICDL1Q6ZP65 573 aa13.45□□□□□ -0.26
CD44-209ENST00000433892 KRT222Q8N1A0 295 aa13.45□□□□□ -0.26
CD44-209ENST00000433892 RBM28Q9NW13 759 aaKnown RBP13.45□□□□□ -0.26
CD44-209ENST00000433892 BSDC1Q9NW68 430 aaPredicted RBP13.45□□□□□ -0.26
CD44-209ENST00000433892 PARP3Q9Y6F1 533 aa13.45□□□□□ -0.26
CD44-209ENST00000433892 TAF1P21675 1872 aa13.45□□□□□ -0.26
CD44-209ENST00000433892 CACNA1SQ13698 1873 aa13.45□□□□□ -0.26
CD44-209ENST00000433892 TEX33O43247 280 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 KCNQ2O43526 872 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 KLRK1P26718 216 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 GNG11P61952 73 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 NPY5RQ15761 445 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 STAMQ92783 540 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 CELF1Q92879 486 aaKnown RBP13.44□□□□□ -0.26
CD44-209ENST00000433892 CCDC34Q96HJ3 373 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 WDR24Q96S15 920 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 DESI2Q9BSY9 194 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 CARD6Q9BX69 1037 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 BRMS1Q9HCU9 246 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 SPATA31A1Q5TZJ5 1347 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 BAZ2BQ9UIF8 2168 aaKnown RBP13.44□□□□□ -0.26
CD44-209ENST00000433892 DUOX1Q9NRD9 1551 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 A0A1B0GTH6 734 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 PTGDRQ13258 359 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 FAM47AQ5JRC9 791 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 TMTC3Q6ZXV5 915 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 SMIM5Q71RC9 77 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 SH3RF1Q7Z6J0 888 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 SRBD1Q8N5C6 995 aaKnown RBP13.44□□□□□ -0.26
CD44-209ENST00000433892 MNS1Q8NEH6 495 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 UBXN4Q92575 508 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 FERMT2Q96AC1 680 aa13.44□□□□□ -0.26
CD44-209ENST00000433892 CDCA7Q9BWT1 371 aaPredicted RBP13.44□□□□□ -0.26
CD44-209ENST00000433892 COL16A1Q07092 1604 aaPredicted RBP13.44□□□□□ -0.26
CD44-209ENST00000433892 FGRP09769 529 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 CALM1P0DP23 149 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 CALM2P0DP24 149 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 CALM3P0DP25 149 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 CLCN6P51797 869 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 KCNQ4P56696 695 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 MTF1Q14872 753 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 SF3B3Q15393 1217 aaKnown RBP13.43□□□□□ -0.26
CD44-209ENST00000433892 TTC38Q5R3I4 469 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 SPATA1Q5VX52 437 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 APTXQ7Z2E3 356 aaKnown RBP13.43□□□□□ -0.26
CD44-209ENST00000433892 TNFRSF25Q93038 417 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 SYNRGQ9UMZ2 1314 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 COBLO75128 1261 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 VEGFAP15692 232 aaPredicted RBP13.43□□□□□ -0.26
CD44-209ENST00000433892 GTF2E1P29083 439 aaPredicted RBP13.43□□□□□ -0.26
CD44-209ENST00000433892 CASQ1P31415 396 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 MECOMQ03112 1051 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 DPYDQ12882 1025 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 CUL4BQ13620 913 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 CPLX3Q8WVH0 158 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 NSUN4Q96CB9 384 aaKnown RBP13.43□□□□□ -0.26
CD44-209ENST00000433892 FAM53CQ9NYF3 392 aa13.43□□□□□ -0.26
CD44-209ENST00000433892 CNTNAP5Q8WYK1 1306 aa13.42□□□□□ -0.26
CD44-209ENST00000433892 DDAH1O94760 285 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms