RNA–Protein interactions for RNA: ENST00000425660.5

ACTB-204, Transcript of actin beta, humanhuman

TSL 1 (best)

Gene ACTB, Length 1,845 nt, Biotype nonsense mediated decay, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-204ENST00000425660 PNMA1Q8ND90 353 aa17.65■□□□□ 0.42
ACTB-204ENST00000425660 AGBL3Q8NEM8 1001 aa17.65■□□□□ 0.42
ACTB-204ENST00000425660 CTCFLQ8NI51 663 aaPredicted RBP17.65■□□□□ 0.42
ACTB-204ENST00000425660 LTBP3Q9NS15 1303 aa17.65■□□□□ 0.42
ACTB-204ENST00000425660 COL2A1P02458 1487 aaPredicted RBP17.65■□□□□ 0.42
ACTB-204ENST00000425660 UBE2Q2LH0YL09 131 aa17.64■□□□□ 0.41
ACTB-204ENST00000425660 GUCY1A2P33402 732 aa17.64■□□□□ 0.41
ACTB-204ENST00000425660 LEO1Q8WVC0 666 aaPredicted RBP17.64■□□□□ 0.41
ACTB-204ENST00000425660 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.64■□□□□ 0.41
ACTB-204ENST00000425660 ATRNL1Q5VV63 1379 aa17.64■□□□□ 0.41
ACTB-204ENST00000425660 PRPF3O43395 683 aaKnown RBP17.63■□□□□ 0.41
ACTB-204ENST00000425660 KIF5BP33176 963 aa17.63■□□□□ 0.41
ACTB-204ENST00000425660 CAVIN1Q6NZI2 390 aaKnown RBP17.63■□□□□ 0.41
ACTB-204ENST00000425660 CMTR1Q8N1G2 835 aaKnown RBP17.63■□□□□ 0.41
ACTB-204ENST00000425660 PRMT6Q96LA8 375 aaPredicted RBP17.63■□□□□ 0.41
ACTB-204ENST00000425660 SPDYE2BA6NHP3 402 aa17.63■□□□□ 0.41
ACTB-204ENST00000425660 ENTPD3O75355 529 aa17.63■□□□□ 0.41
ACTB-204ENST00000425660 PLEKHA8P1O95397 391 aa17.63■□□□□ 0.41
ACTB-204ENST00000425660 SPDYE6P0CI01 402 aa17.63■□□□□ 0.41
ACTB-204ENST00000425660 U2AF2P26368 475 aaKnown RBP eCLIP17.63■□□□□ 0.413e-17■□□□□ 9.4
ACTB-204ENST00000425660 SHMT1P34896 483 aa17.63■□□□□ 0.41
ACTB-204ENST00000425660 TRIM29Q14134 588 aa17.63■□□□□ 0.41
ACTB-204ENST00000425660 ZFPM1Q8IX07 1006 aa17.63■□□□□ 0.41
ACTB-204ENST00000425660 SPATA32Q96LK8 384 aa17.63■□□□□ 0.41
ACTB-204ENST00000425660 TMEM47Q9BQJ4 181 aa17.63■□□□□ 0.41
ACTB-204ENST00000425660 TFIP11Q9UBB9 837 aaKnown RBP17.63■□□□□ 0.41
ACTB-204ENST00000425660 HDAC9Q9UKV0 1011 aa17.63■□□□□ 0.41
ACTB-204ENST00000425660 STX8Q9UNK0 236 aa17.63■□□□□ 0.41
ACTB-204ENST00000425660 UTRNP46939 3433 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 CNTNAP5Q8WYK1 1306 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 IGKV6D-41A0A0C4DH26 115 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 DEKP35659 375 aaKnown RBP17.62■□□□□ 0.41
ACTB-204ENST00000425660 CACNB3P54284 484 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 CXCL9Q07325 125 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 PKN1Q16512 942 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 METTL16Q86W50 562 aaKnown RBP17.62■□□□□ 0.41
ACTB-204ENST00000425660 CCDC82Q8N4S0 544 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 OGFOD1Q8N543 542 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 MTMR14Q8NCE2 650 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 NLGN2Q8NFZ4 835 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 CEP95Q96GE4 821 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 ZNF396Q96N95 335 aaPredicted RBP17.62■□□□□ 0.41
ACTB-204ENST00000425660 TMEM63CQ9P1W3 806 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 PI4KBQ9UBF8 816 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 RCOR1Q9UKL0 485 aa17.62■□□□□ 0.41
ACTB-204ENST00000425660 ISY1Q9ULR0 285 aaKnown RBP17.62■□□□□ 0.41
ACTB-204ENST00000425660 KIF28PB7ZC32 967 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 MMP1P03956 469 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 GRM4Q14833 912 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 SH3BP5LQ7L8J4 393 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 SRBD1Q8N5C6 995 aaKnown RBP17.61■□□□□ 0.41
ACTB-204ENST00000425660 TDRD3Q9H7E2 651 aaKnown RBP17.61■□□□□ 0.41
ACTB-204ENST00000425660 MYH15Q9Y2K3 1946 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 FSD2A1L4K1 749 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 DDTLA6NHG4 134 aaPredicted RBP17.61■□□□□ 0.41
ACTB-204ENST00000425660 MMP14P50281 582 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 ZNF445P59923 1031 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 ZSCAN23Q3MJ62 389 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 MYSM1Q5VVJ2 828 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 JDP2Q8WYK2 163 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 USP28Q96RU2 1077 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 DNAJC18Q9H819 358 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 MTMR4Q9NYA4 1195 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 RBM27Q9P2N5 1060 aaKnown RBP17.61■□□□□ 0.41
ACTB-204ENST00000425660 BCS1LQ9Y276 419 aa17.61■□□□□ 0.41
ACTB-204ENST00000425660 ZBTB12Q9Y330 459 aaPredicted RBP17.61■□□□□ 0.41
ACTB-204ENST00000425660 TOP1P11387 765 aaKnown RBP17.6■□□□□ 0.41
ACTB-204ENST00000425660 GNAQP50148 359 aa17.6■□□□□ 0.41
ACTB-204ENST00000425660 AKAP17AQ02040 695 aaKnown RBP17.6■□□□□ 0.41
ACTB-204ENST00000425660 TCP10Q12799 353 aa17.6■□□□□ 0.41
ACTB-204ENST00000425660 CCDC17Q96LX7 622 aa17.6■□□□□ 0.41
ACTB-204ENST00000425660 POLR3EQ9NVU0 708 aa17.6■□□□□ 0.41
ACTB-204ENST00000425660 RTEL1Q9NZ71 1219 aa17.6■□□□□ 0.41
ACTB-204ENST00000425660 MAD2L2Q9UI95 211 aa17.6■□□□□ 0.41
ACTB-204ENST00000425660 SIPA1L1O43166 1804 aa17.6■□□□□ 0.41
ACTB-204ENST00000425660 AKR1B1P15121 316 aa17.59■□□□□ 0.41
ACTB-204ENST00000425660 CIAPIN1Q6FI81 312 aa17.59■□□□□ 0.41
ACTB-204ENST00000425660 FOXP4Q8IVH2 680 aaPredicted RBP17.59■□□□□ 0.41
ACTB-204ENST00000425660 SYAP1Q96A49 352 aaPredicted RBP17.59■□□□□ 0.41
ACTB-204ENST00000425660 FHDC1Q9C0D6 1143 aaPredicted RBP17.59■□□□□ 0.41
ACTB-204ENST00000425660 V9GY48 417 aaPredicted RBP17.59■□□□□ 0.41
ACTB-204ENST00000425660 PALM3A6NDB9 673 aaPredicted RBP17.58■□□□□ 0.41
ACTB-204ENST00000425660 XBP1P17861 261 aa17.58■□□□□ 0.41
ACTB-204ENST00000425660 DLGAP5Q15398 846 aa17.58■□□□□ 0.41
ACTB-204ENST00000425660 FKBP1CQ5VVH2 108 aa17.58■□□□□ 0.41
ACTB-204ENST00000425660 TATDN1Q6P1N9 297 aa17.58■□□□□ 0.41
ACTB-204ENST00000425660 ZBED3Q96IU2 234 aaPredicted RBP17.58■□□□□ 0.41
ACTB-204ENST00000425660 FOXP1Q9H334 677 aaPredicted RBP17.58■□□□□ 0.41
ACTB-204ENST00000425660 GREB1LQ9C091 1923 aaPredicted RBP17.58■□□□□ 0.41
ACTB-204ENST00000425660 NASPP49321 788 aaPredicted RBP17.58■□□□□ 0.4
ACTB-204ENST00000425660 SPDYE2Q495Y8 402 aa17.58■□□□□ 0.4
ACTB-204ENST00000425660 SHISA4Q96DD7 197 aa17.58■□□□□ 0.4
ACTB-204ENST00000425660 LZTS2Q9BRK4 669 aa17.58■□□□□ 0.4
ACTB-204ENST00000425660 FTOQ9C0B1 505 aaKnown RBP eCLIP17.58■□□□□ 0.41e-22■■□□□ 11.6
ACTB-204ENST00000425660 ARFGEF1Q9Y6D6 1849 aa17.57■□□□□ 0.4
ACTB-204ENST00000425660 YEATS4O95619 227 aa17.57■□□□□ 0.4
ACTB-204ENST00000425660 TNIP1Q15025 636 aa17.57■□□□□ 0.4
ACTB-204ENST00000425660 SAFBQ15424 915 aaKnown RBP eCLIP17.57■□□□□ 0.4
ACTB-204ENST00000425660 PPP4R3BQ5MIZ7 849 aa17.57■□□□□ 0.4
ACTB-204ENST00000425660 STAG2Q8N3U4 1231 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms