RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 ARPP21Q9UBL0 812 aaPredicted RBP20.91■□□□□ 0.94
USP48-204ENST00000400301 BICDL2A1A5D9 508 aa20.91■□□□□ 0.94
USP48-204ENST00000400301 ARID4AP29374 1257 aaPredicted RBP20.91■□□□□ 0.94
USP48-204ENST00000400301 KRT9P35527 623 aa20.91■□□□□ 0.94
USP48-204ENST00000400301 GOLGA8FQ08AF8 430 aa20.91■□□□□ 0.94
USP48-204ENST00000400301 GOLGA8DPQ0D2H9 430 aa20.91■□□□□ 0.94
USP48-204ENST00000400301 PTGDRQ13258 359 aa20.91■□□□□ 0.94
USP48-204ENST00000400301 DRC1Q96MC2 740 aa20.91■□□□□ 0.94
USP48-204ENST00000400301 CYP2D7A0A087X1C5 515 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 PSDA5PKW4 1024 aaPredicted RBP20.9■□□□□ 0.94
USP48-204ENST00000400301 MATR3P43243 847 aaKnown RBP eCLIP20.9■□□□□ 0.941e-8■■■□□ 17.7
USP48-204ENST00000400301 TGFBRAP1Q8WUH2 860 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 ALS2CR12Q96Q35 445 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 SPTLC3Q9NUV7 552 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 CDC27P30260 824 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 KCNQ4P56696 695 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 KRT83P78385 493 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 SYCP1Q15431 976 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 TCERG1LQ5VWI1 586 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 SYMPKQ92797 1274 aaKnown RBP20.9■□□□□ 0.94
USP48-204ENST00000400301 RIMBP2O15034 1052 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 CTDNEP1O95476 244 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 RHOXF2BP0C7M4 288 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 SCG2P13521 617 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 PDE4DQ08499 809 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 CCDC42Q96M95 316 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 RHOXF2Q9BQY4 288 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 ZC3H12CQ9C0D7 883 aaKnown RBP20.9■□□□□ 0.94
USP48-204ENST00000400301 PCDHB6Q9Y5E3 794 aa20.9■□□□□ 0.94
USP48-204ENST00000400301 UBAP1LF5GYI3 381 aa20.89■□□□□ 0.94
USP48-204ENST00000400301 KRT86O43790 486 aa20.89■□□□□ 0.94
USP48-204ENST00000400301 TBC1D8BQ0IIM8 1120 aa20.89■□□□□ 0.94
USP48-204ENST00000400301 PPP1R13BQ96KQ4 1090 aa20.89■□□□□ 0.94
USP48-204ENST00000400301 ST3GAL1Q11201 340 aa20.89■□□□□ 0.93
USP48-204ENST00000400301 CENPHQ9H3R5 247 aa20.89■□□□□ 0.93
USP48-204ENST00000400301 CDR1P51861 262 aa20.89■□□□□ 0.93
USP48-204ENST00000400301 NELFBQ8WX92 580 aa20.89■□□□□ 0.93
USP48-204ENST00000400301 KCNF1Q9H3M0 494 aa20.89■□□□□ 0.93
USP48-204ENST00000400301 PPP2R2CQ9Y2T4 447 aa20.89■□□□□ 0.93
USP48-204ENST00000400301 PNMA1Q8ND90 353 aa20.88■□□□□ 0.93
USP48-204ENST00000400301 KIF28PB7ZC32 967 aa20.88■□□□□ 0.93
USP48-204ENST00000400301 PPP1R12BO60237 982 aaPredicted RBP20.88■□□□□ 0.93
USP48-204ENST00000400301 KIF5AQ12840 1032 aa20.88■□□□□ 0.93
USP48-204ENST00000400301 ERFEQ4G0M1 354 aa20.88■□□□□ 0.93
USP48-204ENST00000400301 OVOS2A0A0G2JMS6 1433 aa20.88■□□□□ 0.93
USP48-204ENST00000400301 WDR19Q8NEZ3 1342 aa20.88■□□□□ 0.93
USP48-204ENST00000400301 CCNT1O60563 726 aaKnown RBP20.88■□□□□ 0.93
USP48-204ENST00000400301 LMAN1P49257 510 aa20.88■□□□□ 0.93
USP48-204ENST00000400301 CSGALNACT2Q8N6G5 542 aa20.88■□□□□ 0.93
USP48-204ENST00000400301 ARHGAP23Q9P227 1491 aa20.88■□□□□ 0.93
USP48-204ENST00000400301 EIF6P56537 245 aaKnown RBP20.87■□□□□ 0.93
USP48-204ENST00000400301 BLIDQ8IZY5 108 aa20.87■□□□□ 0.93
USP48-204ENST00000400301 SLIT1O75093 1534 aa20.87■□□□□ 0.93
USP48-204ENST00000400301 CUL5Q93034 780 aa20.87■□□□□ 0.93
USP48-204ENST00000400301 CCDC122Q5T0U0 273 aa20.87■□□□□ 0.93
USP48-204ENST00000400301 GPKOWQ92917 476 aaPredicted RBP eCLIP20.87■□□□□ 0.932e-6■■□□□ 11.8
USP48-204ENST00000400301 LY9Q9HBG7 655 aa20.87■□□□□ 0.93
USP48-204ENST00000400301 MAN1B1Q9UKM7 699 aa20.87■□□□□ 0.93
USP48-204ENST00000400301 DDAH1O94760 285 aa20.87■□□□□ 0.93
USP48-204ENST00000400301 ZNF622Q969S3 477 aaKnown RBP eCLIP20.87■□□□□ 0.932e-9■■□□□ 13.8
USP48-204ENST00000400301 TTF2Q9UNY4 1162 aaKnown RBP20.87■□□□□ 0.93
USP48-204ENST00000400301 TXKP42681 527 aa20.86■□□□□ 0.93
USP48-204ENST00000400301 SPATA1Q5VX52 437 aa20.86■□□□□ 0.93
USP48-204ENST00000400301 TMTC1Q8IUR5 882 aa20.86■□□□□ 0.93
USP48-204ENST00000400301 CAPZA3Q96KX2 299 aa20.86■□□□□ 0.93
USP48-204ENST00000400301 GPCPD1Q9NPB8 672 aa20.86■□□□□ 0.93
USP48-204ENST00000400301 SOS2Q07890 1332 aaPredicted RBP20.86■□□□□ 0.93
USP48-204ENST00000400301 MEGF6O75095 1541 aa20.86■□□□□ 0.93
USP48-204ENST00000400301 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.86■□□□□ 0.93
USP48-204ENST00000400301 GOLGA6L10A6NI86 522 aa20.86■□□□□ 0.93
USP48-204ENST00000400301 CKAP4Q07065 602 aaKnown RBP20.86■□□□□ 0.93
USP48-204ENST00000400301 NONOQ15233 471 aaKnown RBP eCLIP20.86■□□□□ 0.933e-6■■■■□ 21.1
USP48-204ENST00000400301 TRERF1Q96PN7 1200 aa20.86■□□□□ 0.93
USP48-204ENST00000400301 PLA2G12BQ9BX93 195 aa20.86■□□□□ 0.93
USP48-204ENST00000400301 CALCOCO1Q9P1Z2 691 aa20.86■□□□□ 0.93
USP48-204ENST00000400301 KDM6AO15550 1401 aaPredicted RBP20.86■□□□□ 0.93
USP48-204ENST00000400301 FDPSP14324 419 aaKnown RBP20.86■□□□□ 0.93
USP48-204ENST00000400301 TRIM14Q14142 442 aa20.86■□□□□ 0.93
USP48-204ENST00000400301 IQCB1Q15051 598 aa20.86■□□□□ 0.93
USP48-204ENST00000400301 CYP26C1Q6V0L0 522 aa20.86■□□□□ 0.93
USP48-204ENST00000400301 ABCC12Q96J65 1359 aa20.85■□□□□ 0.93
USP48-204ENST00000400301 CSF1RP07333 972 aa20.85■□□□□ 0.93
USP48-204ENST00000400301 VIRMAQ69YN4 1812 aaKnown RBP20.85■□□□□ 0.93
USP48-204ENST00000400301 TAF3Q5VWG9 929 aa20.85■□□□□ 0.93
USP48-204ENST00000400301 SV2BQ7L1I2 683 aa20.85■□□□□ 0.93
USP48-204ENST00000400301 PCP11498 1178 aaKnown RBP20.85■□□□□ 0.93
USP48-204ENST00000400301 VPS36Q86VN1 386 aa20.85■□□□□ 0.93
USP48-204ENST00000400301 SLF1Q9BQI6 1058 aa20.85■□□□□ 0.93
USP48-204ENST00000400301 NOC4LQ9BVI4 516 aaKnown RBP20.85■□□□□ 0.93
USP48-204ENST00000400301 ATP8A2Q9NTI2 1148 aa20.85■□□□□ 0.93
USP48-204ENST00000400301 GGA1Q9UJY5 639 aa20.85■□□□□ 0.93
USP48-204ENST00000400301 MYO6Q9UM54 1294 aa20.85■□□□□ 0.93
USP48-204ENST00000400301 CHMP4BP1P59074 171 aa20.85■□□□□ 0.93
USP48-204ENST00000400301 RESP18Q5W5W9 173 aa20.85■□□□□ 0.93
USP48-204ENST00000400301 SMYD4Q8IYR2 804 aaPredicted RBP20.85■□□□□ 0.93
USP48-204ENST00000400301 STAG1Q8WVM7 1258 aa20.84■□□□□ 0.93
USP48-204ENST00000400301 C3P01024 1663 aa20.84■□□□□ 0.93
USP48-204ENST00000400301 TACC1O75410 805 aa20.84■□□□□ 0.93
USP48-204ENST00000400301 ANTXR2P58335 489 aa20.84■□□□□ 0.93
USP48-204ENST00000400301 INF2Q27J81 1249 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 125.4 ms