RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 DNAJC21Q5F1R6 531 aaKnown RBP18.22■□□□□ 0.51
PCDH1-203ENST00000394536 ENOX1Q8TC92 643 aaKnown RBP18.22■□□□□ 0.51
PCDH1-203ENST00000394536 BPIFA3Q9BQP9 254 aa18.22■□□□□ 0.51
PCDH1-203ENST00000394536 FBXO3Q9UK99 471 aa18.22■□□□□ 0.51
PCDH1-203ENST00000394536 PEAK1Q9H792 1746 aa18.22■□□□□ 0.51
PCDH1-203ENST00000394536 FAM205CA6NFA0 338 aa18.22■□□□□ 0.51
PCDH1-203ENST00000394536 KRT18P05783 430 aaKnown RBP18.22■□□□□ 0.51
PCDH1-203ENST00000394536 CRACR2BQ8N4Y2 399 aaPredicted RBP18.22■□□□□ 0.51
PCDH1-203ENST00000394536 NELFBQ8WX92 580 aa18.22■□□□□ 0.51
PCDH1-203ENST00000394536 CRNKL1Q9BZJ0 848 aaKnown RBP18.22■□□□□ 0.51
PCDH1-203ENST00000394536 PDE11AQ9HCR9 933 aa18.22■□□□□ 0.51
PCDH1-203ENST00000394536 TFCP2L1Q9NZI6 479 aa18.22■□□□□ 0.51
PCDH1-203ENST00000394536 RFX7Q2KHR2 1363 aa18.21■□□□□ 0.51
PCDH1-203ENST00000394536 LONRF2Q1L5Z9 754 aa18.21■□□□□ 0.51
PCDH1-203ENST00000394536 WWC2Q6AWC2 1192 aa18.21■□□□□ 0.51
PCDH1-203ENST00000394536 DTHD1Q6ZMT9 781 aa18.21■□□□□ 0.51
PCDH1-203ENST00000394536 MMRN2Q9H8L6 949 aa18.21■□□□□ 0.51
PCDH1-203ENST00000394536 RMND1Q9NWS8 449 aa18.21■□□□□ 0.51
PCDH1-203ENST00000394536 RTL9Q8NET4 1388 aa18.21■□□□□ 0.51
PCDH1-203ENST00000394536 PTPREP23469 700 aa18.21■□□□□ 0.51
PCDH1-203ENST00000394536 MAP9Q49MG5 647 aa18.21■□□□□ 0.51
PCDH1-203ENST00000394536 H0YHG0 523 aa18.21■□□□□ 0.51
PCDH1-203ENST00000394536 NCAPHQ15003 741 aa18.21■□□□□ 0.51
PCDH1-203ENST00000394536 ZNF652Q9Y2D9 606 aa18.21■□□□□ 0.51
PCDH1-203ENST00000394536 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.2■□□□□ 0.5
PCDH1-203ENST00000394536 PPARDQ03181 441 aa18.2■□□□□ 0.5
PCDH1-203ENST00000394536 TBC1D8BQ0IIM8 1120 aa18.2■□□□□ 0.5
PCDH1-203ENST00000394536 ZSCAN26Q16670 478 aa18.2■□□□□ 0.5
PCDH1-203ENST00000394536 LIFRP42702 1097 aa18.2■□□□□ 0.5
PCDH1-203ENST00000394536 HNRNPH2P55795 449 aaKnown RBP18.2■□□□□ 0.5
PCDH1-203ENST00000394536 DYNLL1P63167 89 aaKnown RBP18.2■□□□□ 0.5
PCDH1-203ENST00000394536 ISCA1Q9BUE6 129 aa18.2■□□□□ 0.5
PCDH1-203ENST00000394536 FOXP1Q9H334 677 aaPredicted RBP18.2■□□□□ 0.5
PCDH1-203ENST00000394536 CASP7P55210 303 aa18.2■□□□□ 0.5
PCDH1-203ENST00000394536 TMTC1Q8IUR5 882 aa18.2■□□□□ 0.5
PCDH1-203ENST00000394536 RASGRP4Q8TDF6 673 aa18.2■□□□□ 0.5
PCDH1-203ENST00000394536 MYO1BO43795 1136 aa18.19■□□□□ 0.5
PCDH1-203ENST00000394536 SLFN14P0C7P3 912 aa18.19■□□□□ 0.5
PCDH1-203ENST00000394536 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.19■□□□□ 0.5
PCDH1-203ENST00000394536 UIMC1Q96RL1 719 aa18.19■□□□□ 0.5
PCDH1-203ENST00000394536 AGXT2Q9BYV1 514 aa18.19■□□□□ 0.5
PCDH1-203ENST00000394536 EXOC1Q9NV70 894 aa18.19■□□□□ 0.5
PCDH1-203ENST00000394536 TTF2Q9UNY4 1162 aaKnown RBP18.19■□□□□ 0.5
PCDH1-203ENST00000394536 MROH5Q6ZUA9 1318 aa18.19■□□□□ 0.5
PCDH1-203ENST00000394536 C3P01024 1663 aa18.19■□□□□ 0.5
PCDH1-203ENST00000394536 ZMYND10O75800 440 aa18.19■□□□□ 0.5
PCDH1-203ENST00000394536 CYP26C1Q6V0L0 522 aa18.19■□□□□ 0.5
PCDH1-203ENST00000394536 RABGGTAQ92696 567 aa18.19■□□□□ 0.5
PCDH1-203ENST00000394536 CCDC42Q96M95 316 aa18.19■□□□□ 0.5
PCDH1-203ENST00000394536 RIPOR2Q9Y4F9 1068 aa18.19■□□□□ 0.5
PCDH1-203ENST00000394536 IGDCC4Q8TDY8 1250 aa18.19■□□□□ 0.5
PCDH1-203ENST00000394536 USO1O60763 962 aaKnown RBP18.18■□□□□ 0.5
PCDH1-203ENST00000394536 CYLC1P35663 651 aaPredicted RBP18.18■□□□□ 0.5
PCDH1-203ENST00000394536 ARID5AQ03989 594 aa18.18■□□□□ 0.5
PCDH1-203ENST00000394536 LETM2Q2VYF4 491 aa18.18■□□□□ 0.5
PCDH1-203ENST00000394536 FOXP4Q8IVH2 680 aaPredicted RBP18.18■□□□□ 0.5
PCDH1-203ENST00000394536 GPKOWQ92917 476 aaPredicted RBP eCLIP18.18■□□□□ 0.5
PCDH1-203ENST00000394536 ZSCAN10Q96SZ4 725 aaPredicted RBP18.18■□□□□ 0.5
PCDH1-203ENST00000394536 SRPRBQ9Y5M8 271 aaKnown RBP18.18■□□□□ 0.5
PCDH1-203ENST00000394536 BAZ2BQ9UIF8 2168 aaKnown RBP18.18■□□□□ 0.5
PCDH1-203ENST00000394536 KRT86O43790 486 aa18.18■□□□□ 0.5
PCDH1-203ENST00000394536 PLEKHA8P1O95397 391 aa18.18■□□□□ 0.5
PCDH1-203ENST00000394536 TUBE1Q9UJT0 475 aa18.18■□□□□ 0.5
PCDH1-203ENST00000394536 TSPY3P0CV98 308 aa18.18■□□□□ 0.5
PCDH1-203ENST00000394536 TSPY8P0CW00 308 aa18.18■□□□□ 0.5
PCDH1-203ENST00000394536 KIF5AQ12840 1032 aa18.18■□□□□ 0.5
PCDH1-203ENST00000394536 TRIML1Q8N9V2 468 aa18.18■□□□□ 0.5
PCDH1-203ENST00000394536 RGS22Q8NE09 1264 aa18.18■□□□□ 0.5
PCDH1-203ENST00000394536 FERMT2Q96AC1 680 aa18.18■□□□□ 0.5
PCDH1-203ENST00000394536 PLEKHA4Q9H4M7 779 aa18.18■□□□□ 0.5
PCDH1-203ENST00000394536 SEC63Q9UGP8 760 aaKnown RBP18.18■□□□□ 0.5
PCDH1-203ENST00000394536 CDC23Q9UJX2 597 aa18.18■□□□□ 0.5
PCDH1-203ENST00000394536 WDR17Q8IZU2 1322 aa18.17■□□□□ 0.5
PCDH1-203ENST00000394536 TADA3O75528 432 aa18.17■□□□□ 0.5
PCDH1-203ENST00000394536 SRGAP1Q7Z6B7 1085 aa18.17■□□□□ 0.5
PCDH1-203ENST00000394536 CSGALNACT2Q8N6G5 542 aa18.17■□□□□ 0.5
PCDH1-203ENST00000394536 KCNJ18B7U540 433 aa18.17■□□□□ 0.5
PCDH1-203ENST00000394536 CALM1P0DP23 149 aa18.17■□□□□ 0.5
PCDH1-203ENST00000394536 CALM2P0DP24 149 aa18.17■□□□□ 0.5
PCDH1-203ENST00000394536 CALM3P0DP25 149 aa18.17■□□□□ 0.5
PCDH1-203ENST00000394536 MORC3Q14149 939 aa18.17■□□□□ 0.5
PCDH1-203ENST00000394536 KCNJ12Q14500 433 aa18.17■□□□□ 0.5
PCDH1-203ENST00000394536 FCHSD1Q86WN1 690 aa18.17■□□□□ 0.5
PCDH1-203ENST00000394536 SOS2Q07890 1332 aaPredicted RBP18.17■□□□□ 0.5
PCDH1-203ENST00000394536 PAFAH1B1P43034 410 aa18.17■□□□□ 0.5
PCDH1-203ENST00000394536 IKQ13123 557 aaPredicted RBP18.17■□□□□ 0.5
PCDH1-203ENST00000394536 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.17■□□□□ 0.5
PCDH1-203ENST00000394536 ERCC5P28715 1186 aaPredicted RBP18.16■□□□□ 0.5
PCDH1-203ENST00000394536 CHRNDQ07001 517 aa18.16■□□□□ 0.5
PCDH1-203ENST00000394536 IQCEQ6IPM2 695 aa18.16■□□□□ 0.5
PCDH1-203ENST00000394536 CC2D1AQ6P1N0 951 aaPredicted RBP18.16■□□□□ 0.5
PCDH1-203ENST00000394536 PAGE5Q96GU1 130 aa18.16■□□□□ 0.5
PCDH1-203ENST00000394536 GSG1L2A8MUP6 293 aa18.16■□□□□ 0.5
PCDH1-203ENST00000394536 NAPAP54920 295 aa18.16■□□□□ 0.5
PCDH1-203ENST00000394536 TSPYL1Q9H0U9 437 aa18.16■□□□□ 0.5
PCDH1-203ENST00000394536 CALML3P27482 149 aa18.15■□□□□ 0.5
PCDH1-203ENST00000394536 PDE4DQ08499 809 aa18.15■□□□□ 0.5
PCDH1-203ENST00000394536 PTPAQ15257 358 aa18.15■□□□□ 0.5
PCDH1-203ENST00000394536 PYM1Q9BRP8 204 aaKnown RBP18.15■□□□□ 0.5
PCDH1-203ENST00000394536 L2HGDHQ9H9P8 463 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms