RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 TATDN1Q6P1N9 297 aa18.81■□□□□ 0.6
CHMP3-202ENST00000393773 DEFB123Q8N688 67 aa18.81■□□□□ 0.6
CHMP3-202ENST00000393773 COL11A1P12107 1806 aaPredicted RBP18.8■□□□□ 0.6
CHMP3-202ENST00000393773 UBE2OQ9C0C9 1292 aaKnown RBP18.8■□□□□ 0.6
CHMP3-202ENST00000393773 EHD4Q9H223 541 aa18.8■□□□□ 0.6
CHMP3-202ENST00000393773 CYP7A1P22680 504 aa18.79■□□□□ 0.6
CHMP3-202ENST00000393773 MAP2K5Q13163 448 aa18.79■□□□□ 0.6
CHMP3-202ENST00000393773 OS9Q13438 667 aaPredicted RBP18.79■□□□□ 0.6
CHMP3-202ENST00000393773 ZYXQ15942 572 aaKnown RBP18.79■□□□□ 0.6
CHMP3-202ENST00000393773 MIGA1Q8NAN2 632 aa18.79■□□□□ 0.6
CHMP3-202ENST00000393773 FEZ1Q99689 392 aa18.79■□□□□ 0.6
CHMP3-202ENST00000393773 C1orf115Q9H7X2 142 aa18.79■□□□□ 0.6
CHMP3-202ENST00000393773 FLRT1Q9NZU1 646 aa18.79■□□□□ 0.6
CHMP3-202ENST00000393773 RABGAP1Q9Y3P9 1069 aa18.79■□□□□ 0.6
CHMP3-202ENST00000393773 MYH7P12883 1935 aa18.78■□□□□ 0.6
CHMP3-202ENST00000393773 SURF6O75683 361 aaKnown RBP18.78■□□□□ 0.6
CHMP3-202ENST00000393773 VCAM1P19320 739 aa18.78■□□□□ 0.6
CHMP3-202ENST00000393773 ATP8B2P98198 1209 aa18.78■□□□□ 0.6
CHMP3-202ENST00000393773 LBX2Q6XYB7 198 aa18.78■□□□□ 0.6
CHMP3-202ENST00000393773 SERPINB13Q9UIV8 391 aa18.78■□□□□ 0.6
CHMP3-202ENST00000393773 STXBP5LQ9Y2K9 1186 aa18.78■□□□□ 0.6
CHMP3-202ENST00000393773 NOP58Q9Y2X3 529 aaKnown RBP18.78■□□□□ 0.6
CHMP3-202ENST00000393773 BAZ2AQ9UIF9 1905 aaKnown RBP18.78■□□□□ 0.6
CHMP3-202ENST00000393773 USP17L15C9J2P7 530 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 USP17L13C9JLJ4 530 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 USP17L11C9JVI0 530 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 USP17L18D6R9N7 530 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 USP17L22D6RA61 530 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 USP17L17D6RBQ6 530 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 USP17L19D6RCP7 530 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 USP17L20D6RJB6 530 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 USP17L24Q0WX57 530 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 ZKSCAN2Q63HK3 967 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 CERS3Q8IU89 383 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 CCAR1Q8IX12 1150 aaKnown RBP18.77■□□□□ 0.6
CHMP3-202ENST00000393773 EAF2Q96CJ1 260 aaPredicted RBP18.77■□□□□ 0.6
CHMP3-202ENST00000393773 KIAA1683Q9H0B3 1180 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 MTMR10Q9NXD2 777 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 NDUFB9Q9Y6M9 179 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 PLXNA1Q9UIW2 1896 aa18.77■□□□□ 0.6
CHMP3-202ENST00000393773 ZNFX1Q9P2E3 1918 aaKnown RBP18.76■□□□□ 0.59
CHMP3-202ENST00000393773 CCER2I3L3R5 266 aa18.76■□□□□ 0.59
CHMP3-202ENST00000393773 IDH1O75874 414 aaKnown RBP18.76■□□□□ 0.59
CHMP3-202ENST00000393773 SHMT1P34896 483 aa18.76■□□□□ 0.59
CHMP3-202ENST00000393773 GRB14Q14449 540 aa18.76■□□□□ 0.59
CHMP3-202ENST00000393773 CATSPERGQ6ZRH7 1159 aa18.76■□□□□ 0.59
CHMP3-202ENST00000393773 MAGEB6Q8N7X4 407 aa18.76■□□□□ 0.59
CHMP3-202ENST00000393773 ACER1Q8TDN7 264 aa18.76■□□□□ 0.59
CHMP3-202ENST00000393773 CCDC8Q9H0W5 538 aaPredicted RBP18.76■□□□□ 0.59
CHMP3-202ENST00000393773 BTBD7Q9P203 1132 aa18.76■□□□□ 0.59
CHMP3-202ENST00000393773 SLC15A5A6NIM6 579 aa18.75■□□□□ 0.59
CHMP3-202ENST00000393773 SPDYE16A6NNV3 312 aaPredicted RBP18.75■□□□□ 0.59
CHMP3-202ENST00000393773 IGHA2P01877 340 aa18.75■□□□□ 0.59
CHMP3-202ENST00000393773 HOXC6P09630 235 aa18.75■□□□□ 0.59
CHMP3-202ENST00000393773 PTPREP23469 700 aa18.75■□□□□ 0.59
CHMP3-202ENST00000393773 USP5P45974 858 aa18.75■□□□□ 0.59
CHMP3-202ENST00000393773 USP14P54578 494 aa18.75■□□□□ 0.59
CHMP3-202ENST00000393773 CCNA1P78396 465 aa18.75■□□□□ 0.59
CHMP3-202ENST00000393773 RAB3GAP1Q15042 981 aa18.75■□□□□ 0.59
CHMP3-202ENST00000393773 EDC3Q96F86 508 aaKnown RBP18.75■□□□□ 0.59
CHMP3-202ENST00000393773 ANTXR1Q9H6X2 564 aa18.75■□□□□ 0.59
CHMP3-202ENST00000393773 CWC22Q9HCG8 908 aaKnown RBP18.75■□□□□ 0.59
CHMP3-202ENST00000393773 CDH23Q9H251 3354 aa18.75■□□□□ 0.59
CHMP3-202ENST00000393773 GUCY1A2P33402 732 aa18.74■□□□□ 0.59
CHMP3-202ENST00000393773 MDM2Q00987 491 aaPredicted RBP18.74■□□□□ 0.59
CHMP3-202ENST00000393773 ABCB5Q2M3G0 1257 aa18.74■□□□□ 0.59
CHMP3-202ENST00000393773 CERKLQ49MI3 558 aaPredicted RBP18.74■□□□□ 0.59
CHMP3-202ENST00000393773 DDX20Q9UHI6 824 aaKnown RBP18.74■□□□□ 0.59
CHMP3-202ENST00000393773 PRUNE2Q8WUY3 3088 aa18.74■□□□□ 0.59
CHMP3-202ENST00000393773 GLRX3O76003 335 aaKnown RBP18.73■□□□□ 0.59
CHMP3-202ENST00000393773 MFSD14CQ5VZR4 134 aa18.73■□□□□ 0.59
CHMP3-202ENST00000393773 TMED8Q6PL24 325 aaPredicted RBP18.73■□□□□ 0.59
CHMP3-202ENST00000393773 TRPV1Q8NER1 839 aa18.73■□□□□ 0.59
CHMP3-202ENST00000393773 NPLOC4Q8TAT6 608 aa18.73■□□□□ 0.59
CHMP3-202ENST00000393773 RIOK1Q9BRS2 568 aaKnown RBP18.73■□□□□ 0.59
CHMP3-202ENST00000393773 RPAP3Q9H6T3 665 aaPredicted RBP18.73■□□□□ 0.59
CHMP3-202ENST00000393773 VCANP13611 3396 aa18.72■□□□□ 0.59
CHMP3-202ENST00000393773 RLBP1P12271 317 aa18.72■□□□□ 0.59
CHMP3-202ENST00000393773 CYBAP13498 195 aa18.72■□□□□ 0.59
CHMP3-202ENST00000393773 PLCD1P51178 756 aa18.72■□□□□ 0.59
CHMP3-202ENST00000393773 EVX2Q03828 476 aa18.72■□□□□ 0.59
CHMP3-202ENST00000393773 GABPAQ06546 454 aa18.72■□□□□ 0.59
CHMP3-202ENST00000393773 WDR78Q5VTH9 848 aa18.72■□□□□ 0.59
CHMP3-202ENST00000393773 TTC6Q86TZ1 520 aa18.72■□□□□ 0.59
CHMP3-202ENST00000393773 LPAR1Q92633 364 aa18.72■□□□□ 0.59
CHMP3-202ENST00000393773 SPTBN5Q9NRC6 3674 aaKnown RBP18.71■□□□□ 0.59
CHMP3-202ENST00000393773 GREB1LQ9C091 1923 aaPredicted RBP18.71■□□□□ 0.59
CHMP3-202ENST00000393773 DNM1LO00429 736 aa18.71■□□□□ 0.59
CHMP3-202ENST00000393773 MSCO60682 206 aa18.71■□□□□ 0.59
CHMP3-202ENST00000393773 CYP2C19P33261 490 aa18.71■□□□□ 0.59
CHMP3-202ENST00000393773 SENP6Q9GZR1 1112 aaPredicted RBP18.71■□□□□ 0.59
CHMP3-202ENST00000393773 IVNS1ABPQ9Y6Y0 642 aa18.71■□□□□ 0.59
CHMP3-202ENST00000393773 MAP3K12Q12852 859 aa18.7■□□□□ 0.58
CHMP3-202ENST00000393773 SEPT2Q15019 361 aa18.7■□□□□ 0.58
CHMP3-202ENST00000393773 CEP85Q6P2H3 762 aa18.7■□□□□ 0.58
CHMP3-202ENST00000393773 ITPRIPQ8IWB1 547 aa18.7■□□□□ 0.58
CHMP3-202ENST00000393773 GUCD1Q96NT3 240 aa18.7■□□□□ 0.58
CHMP3-202ENST00000393773 A0A1W2PRG0 241 aa18.69■□□□□ 0.58
CHMP3-202ENST00000393773 ATP2B2Q01814 1243 aa18.69■□□□□ 0.58
CHMP3-202ENST00000393773 FTSJ3Q8IY81 847 aaKnown RBP18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 119.7 ms