RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 GABPAQ06546 454 aa21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 USP48Q86UV5 1035 aa21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 TRIM44Q96DX7 344 aaPredicted RBP21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 CCDC17Q96LX7 622 aa21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 GNAQP50148 359 aa21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 KRT85P78386 507 aa21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 NTRK3Q16288 839 aa21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 FKBP1CQ5VVH2 108 aa21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 FOXP4Q8IVH2 680 aaPredicted RBP21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 ZSCAN29Q8IWY8 852 aaPredicted RBP21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 RBM27Q9P2N5 1060 aaKnown RBP21.11■□□□□ 0.97
CCDC88C-203ENST00000389856 DEXIO95424 95 aa21.1■□□□□ 0.97
CCDC88C-203ENST00000389856 FDPSP14324 419 aaKnown RBP21.1■□□□□ 0.97
CCDC88C-203ENST00000389856 TROAPQ12815 778 aa21.1■□□□□ 0.97
CCDC88C-203ENST00000389856 NFIAQ12857 509 aa21.1■□□□□ 0.97
CCDC88C-203ENST00000389856 ATL3Q6DD88 541 aa21.1■□□□□ 0.97
CCDC88C-203ENST00000389856 SLC44A5Q8NCS7 719 aa21.1■□□□□ 0.97
CCDC88C-203ENST00000389856 ALG1Q9BT22 464 aa21.1■□□□□ 0.97
CCDC88C-203ENST00000389856 RNF26Q9BY78 433 aaPredicted RBP21.1■□□□□ 0.97
CCDC88C-203ENST00000389856 TDRD3Q9H7E2 651 aaKnown RBP21.1■□□□□ 0.97
CCDC88C-203ENST00000389856 FAM217BQ9NTX9 383 aaPredicted RBP21.1■□□□□ 0.97
CCDC88C-203ENST00000389856 ATRNL1Q5VV63 1379 aa21.09■□□□□ 0.97
CCDC88C-203ENST00000389856 XBP1P17861 261 aa21.09■□□□□ 0.97
CCDC88C-203ENST00000389856 FBXO18Q8NFZ0 1043 aa21.09■□□□□ 0.97
CCDC88C-203ENST00000389856 NLGN2Q8NFZ4 835 aa21.09■□□□□ 0.97
CCDC88C-203ENST00000389856 SLC26A6Q9BXS9 759 aa21.09■□□□□ 0.97
CCDC88C-203ENST00000389856 TOP1P11387 765 aaKnown RBP21.08■□□□□ 0.97
CCDC88C-203ENST00000389856 HS1BP3Q53T59 392 aa21.08■□□□□ 0.97
CCDC88C-203ENST00000389856 RCSD1Q6JBY9 416 aa21.08■□□□□ 0.97
CCDC88C-203ENST00000389856 PNMA1Q8ND90 353 aa21.08■□□□□ 0.97
CCDC88C-203ENST00000389856 PRMT6Q96LA8 375 aaPredicted RBP21.08■□□□□ 0.97
CCDC88C-203ENST00000389856 LZTS2Q9BRK4 669 aa21.08■□□□□ 0.97
CCDC88C-203ENST00000389856 IL17RBQ9NRM6 502 aa21.08■□□□□ 0.97
CCDC88C-203ENST00000389856 FAM198AQ9UFP1 575 aa21.08■□□□□ 0.97
CCDC88C-203ENST00000389856 CFAP45Q9UL16 551 aa21.08■□□□□ 0.97
CCDC88C-203ENST00000389856 STX8Q9UNK0 236 aa21.08■□□□□ 0.97
CCDC88C-203ENST00000389856 NMT2O60551 498 aa21.07■□□□□ 0.96
CCDC88C-203ENST00000389856 FERMT3Q86UX7 667 aa21.07■□□□□ 0.96
CCDC88C-203ENST00000389856 SCAND2PQ9GZW5 306 aaPredicted RBP21.07■□□□□ 0.96
CCDC88C-203ENST00000389856 RTN4Q9NQC3 1192 aaKnown RBP21.07■□□□□ 0.96
CCDC88C-203ENST00000389856 TCP10Q12799 353 aa21.07■□□□□ 0.96
CCDC88C-203ENST00000389856 RESTQ13127 1097 aa21.07■□□□□ 0.96
CCDC88C-203ENST00000389856 SPDYE2Q495Y8 402 aa21.07■□□□□ 0.96
CCDC88C-203ENST00000389856 CCDC183Q5T5S1 534 aa21.07■□□□□ 0.96
CCDC88C-203ENST00000389856 BRAPQ7Z569 592 aa21.07■□□□□ 0.96
CCDC88C-203ENST00000389856 PHKBQ93100 1093 aa21.07■□□□□ 0.96
CCDC88C-203ENST00000389856 ZNF396Q96N95 335 aaPredicted RBP21.07■□□□□ 0.96
CCDC88C-203ENST00000389856 ZNF70Q9UC06 446 aaPredicted RBP21.07■□□□□ 0.96
CCDC88C-203ENST00000389856 ZBTB12Q9Y330 459 aaPredicted RBP21.07■□□□□ 0.96
CCDC88C-203ENST00000389856 SAFBQ15424 915 aaKnown RBP eCLIP21.06■□□□□ 0.96
CCDC88C-203ENST00000389856 TMTC3Q6ZXV5 915 aa21.06■□□□□ 0.96
CCDC88C-203ENST00000389856 DPF2Q92785 391 aa21.06■□□□□ 0.96
CCDC88C-203ENST00000389856 MYH6P13533 1939 aa21.06■□□□□ 0.96
CCDC88C-203ENST00000389856 FZD9O00144 591 aa21.05■□□□□ 0.96
CCDC88C-203ENST00000389856 DTNBO60941 627 aa21.05■□□□□ 0.96
CCDC88C-203ENST00000389856 TNNI2P48788 182 aa21.05■□□□□ 0.96
CCDC88C-203ENST00000389856 CACNB3P54284 484 aa21.05■□□□□ 0.96
CCDC88C-203ENST00000389856 FOXD4L6Q3SYB3 417 aaPredicted RBP21.05■□□□□ 0.96
CCDC88C-203ENST00000389856 FOXD4L3Q6VB84 417 aaPredicted RBP21.05■□□□□ 0.96
CCDC88C-203ENST00000389856 FAM151AQ8WW52 585 aa21.05■□□□□ 0.96
CCDC88C-203ENST00000389856 RBSNQ9H1K0 784 aa21.05■□□□□ 0.96
CCDC88C-203ENST00000389856 TSPY26PQ9H489 355 aa21.05■□□□□ 0.96
CCDC88C-203ENST00000389856 HERC5Q9UII4 1024 aaKnown RBP21.05■□□□□ 0.96
CCDC88C-203ENST00000389856 PCDHAC2Q9Y5I4 1007 aa21.05■□□□□ 0.96
CCDC88C-203ENST00000389856 ELP1O95163 1332 aa21.05■□□□□ 0.96
CCDC88C-203ENST00000389856 SYCE3A1L190 88 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 PRPF3O43395 683 aaKnown RBP21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 SHMT1P34896 483 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 CLCN1P35523 988 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 NOVP48745 357 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 ZNF280AP59817 542 aaPredicted RBP21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 RASSF7Q02833 373 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 DNM1Q05193 864 aaKnown RBP21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 GNL2Q13823 731 aaKnown RBP21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 GRM4Q14833 912 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 FAM83AQ86UY5 434 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 TMEM47Q9BQJ4 181 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 MYOZ2Q9NPC6 264 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 CNPY2Q9Y2B0 182 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 MYH15Q9Y2K3 1946 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 LMNB1P20700 586 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 FOSBP53539 338 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 TNFAIP1Q13829 316 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 NBPF11Q86T75 865 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 CEP95Q96GE4 821 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 CHAMP1Q96JM3 812 aa21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 FHDC1Q9C0D6 1143 aaPredicted RBP21.04■□□□□ 0.96
CCDC88C-203ENST00000389856 TTLL1O95922 423 aa21.03■□□□□ 0.96
CCDC88C-203ENST00000389856 UVSSAQ2YD98 709 aa21.03■□□□□ 0.96
CCDC88C-203ENST00000389856 ARHGAP27Q6ZUM4 889 aa21.03■□□□□ 0.96
CCDC88C-203ENST00000389856 METTL16Q86W50 562 aaKnown RBP21.03■□□□□ 0.96
CCDC88C-203ENST00000389856 PDLIM2Q96JY6 352 aa21.03■□□□□ 0.96
CCDC88C-203ENST00000389856 MTMR4Q9NYA4 1195 aa21.03■□□□□ 0.96
CCDC88C-203ENST00000389856 TCHHQ07283 1943 aa21.03■□□□□ 0.96
CCDC88C-203ENST00000389856 DICER1Q9UPY3 1922 aaKnown RBP21.03■□□□□ 0.96
CCDC88C-203ENST00000389856 DDTLA6NHG4 134 aaPredicted RBP21.02■□□□□ 0.96
CCDC88C-203ENST00000389856 ESPNB1AK53 854 aa21.02■□□□□ 0.96
CCDC88C-203ENST00000389856 MPHOSPH10O00566 681 aaKnown RBP21.02■□□□□ 0.96
CCDC88C-203ENST00000389856 FIBPO43427 364 aa21.02■□□□□ 0.96
CCDC88C-203ENST00000389856 PPFIA3O75145 1194 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms