RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 IFNAR1P17181 557 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 PBX1P40424 430 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 TTLL11Q8NHH1 800 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 SPATA20Q8TB22 786 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 A0A0G2JS52 829 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 MBD4O95243 580 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 CUL4BQ13620 913 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 SAFBQ15424 915 aaKnown RBP eCLIP20.98■□□□□ 0.95
CCDC3-201ENST00000378825 CNNM1Q9NRU3 951 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 RSPH14Q9UHP6 348 aa20.98■□□□□ 0.95
CCDC3-201ENST00000378825 TNS2Q63HR2 1409 aa20.97■□□□□ 0.95
CCDC3-201ENST00000378825 UBR2Q8IWV8 1755 aa20.97■□□□□ 0.95
CCDC3-201ENST00000378825 PRDM1O75626 825 aa20.97■□□□□ 0.95
CCDC3-201ENST00000378825 ACTN2P35609 894 aa20.97■□□□□ 0.95
CCDC3-201ENST00000378825 IFNL3Q8IZI9 196 aa20.97■□□□□ 0.95
CCDC3-201ENST00000378825 SRPRBQ9Y5M8 271 aaKnown RBP20.97■□□□□ 0.95
CCDC3-201ENST00000378825 RASGRP2Q7LDG7 609 aa20.97■□□□□ 0.95
CCDC3-201ENST00000378825 GOLGA5Q8TBA6 731 aa20.97■□□□□ 0.95
CCDC3-201ENST00000378825 DACH1Q9UI36 760 aa20.97■□□□□ 0.95
CCDC3-201ENST00000378825 RAB21Q9UL25 225 aa20.97■□□□□ 0.95
CCDC3-201ENST00000378825 RTN1Q16799 776 aa20.96■□□□□ 0.95
CCDC3-201ENST00000378825 NAPBQ9H115 298 aa20.96■□□□□ 0.95
CCDC3-201ENST00000378825 BLZF1Q9H2G9 400 aa20.96■□□□□ 0.95
CCDC3-201ENST00000378825 RRP15Q9Y3B9 282 aaKnown RBP20.96■□□□□ 0.95
CCDC3-201ENST00000378825 LRRIQ3A6PVS8 624 aaPredicted RBP20.96■□□□□ 0.95
CCDC3-201ENST00000378825 RILPL1Q5EBL4 403 aa20.96■□□□□ 0.95
CCDC3-201ENST00000378825 SPATA1Q5VX52 437 aa20.96■□□□□ 0.95
CCDC3-201ENST00000378825 HDXQ7Z353 690 aa20.96■□□□□ 0.95
CCDC3-201ENST00000378825 SRLQ86TD4 932 aa20.96■□□□□ 0.95
CCDC3-201ENST00000378825 MAGEB6Q8N7X4 407 aa20.96■□□□□ 0.95
CCDC3-201ENST00000378825 MSANTD4Q8NCY6 345 aa20.96■□□□□ 0.95
CCDC3-201ENST00000378825 SLC4A9Q96Q91 983 aa20.96■□□□□ 0.95
CCDC3-201ENST00000378825 VPS16Q9H269 839 aa20.96■□□□□ 0.95
CCDC3-201ENST00000378825 VPS54Q9P1Q0 977 aa20.96■□□□□ 0.95
CCDC3-201ENST00000378825 BAZ2BQ9UIF8 2168 aaKnown RBP20.96■□□□□ 0.95
CCDC3-201ENST00000378825 CTAGE9A4FU28 777 aa20.95■□□□□ 0.94
CCDC3-201ENST00000378825 PCCAP05165 728 aaPredicted RBP20.95■□□□□ 0.94
CCDC3-201ENST00000378825 CSF1RP07333 972 aa20.95■□□□□ 0.94
CCDC3-201ENST00000378825 CASP8Q14790 479 aa20.95■□□□□ 0.94
CCDC3-201ENST00000378825 ZBTB38Q8NAP3 1195 aaPredicted RBP20.95■□□□□ 0.94
CCDC3-201ENST00000378825 CCDC102AQ96A19 550 aa20.95■□□□□ 0.94
CCDC3-201ENST00000378825 PAGE5Q96GU1 130 aa20.95■□□□□ 0.94
CCDC3-201ENST00000378825 SLF1Q9BQI6 1058 aa20.95■□□□□ 0.94
CCDC3-201ENST00000378825 LIFRP42702 1097 aa20.95■□□□□ 0.94
CCDC3-201ENST00000378825 UBE3CQ15386 1083 aa20.95■□□□□ 0.94
CCDC3-201ENST00000378825 SYMPKQ92797 1274 aaKnown RBP20.95■□□□□ 0.94
CCDC3-201ENST00000378825 GDAP1L1Q96MZ0 367 aa20.95■□□□□ 0.94
CCDC3-201ENST00000378825 RASSF4Q9H2L5 321 aa20.95■□□□□ 0.94
CCDC3-201ENST00000378825 CTNND2Q9UQB3 1225 aa20.95■□□□□ 0.94
CCDC3-201ENST00000378825 PPP1R3GB7ZBB8 358 aa20.94■□□□□ 0.94
CCDC3-201ENST00000378825 STARD3NLO95772 234 aa20.94■□□□□ 0.94
CCDC3-201ENST00000378825 ERCC5P28715 1186 aaPredicted RBP20.94■□□□□ 0.94
CCDC3-201ENST00000378825 ARHGAP25P42331 645 aa20.94■□□□□ 0.94
CCDC3-201ENST00000378825 USP5P45974 858 aa20.94■□□□□ 0.94
CCDC3-201ENST00000378825 SKIDA1Q1XH10 827 aa20.94■□□□□ 0.94
CCDC3-201ENST00000378825 CDKAL1Q5VV42 579 aa20.94■□□□□ 0.94
CCDC3-201ENST00000378825 CRACR2BQ8N4Y2 399 aaPredicted RBP20.94■□□□□ 0.94
CCDC3-201ENST00000378825 HDAC6Q9UBN7 1215 aa20.94■□□□□ 0.94
CCDC3-201ENST00000378825 TBC1D2BQ9UPU7 963 aa20.94■□□□□ 0.94
CCDC3-201ENST00000378825 STK36Q9NRP7 1315 aa20.94■□□□□ 0.94
CCDC3-201ENST00000378825 ENC1O14682 589 aa20.94■□□□□ 0.94
CCDC3-201ENST00000378825 ELOA2Q8IYF1 753 aaPredicted RBP20.94■□□□□ 0.94
CCDC3-201ENST00000378825 CEP112Q8N8E3 955 aa20.94■□□□□ 0.94
CCDC3-201ENST00000378825 VGLL2Q8N8G2 317 aa20.94■□□□□ 0.94
CCDC3-201ENST00000378825 HNRNPLLQ8WVV9 542 aaKnown RBP20.94■□□□□ 0.94
CCDC3-201ENST00000378825 FOXP1Q9H334 677 aaPredicted RBP20.94■□□□□ 0.94
CCDC3-201ENST00000378825 MAPK8IP1Q9UQF2 711 aa20.94■□□□□ 0.94
CCDC3-201ENST00000378825 TRIM22Q8IYM9 498 aa20.93■□□□□ 0.94
CCDC3-201ENST00000378825 TRIML1Q8N9V2 468 aa20.93■□□□□ 0.94
CCDC3-201ENST00000378825 CHP1Q99653 195 aa20.93■□□□□ 0.94
CCDC3-201ENST00000378825 HINFPQ9BQA5 517 aa20.93■□□□□ 0.94
CCDC3-201ENST00000378825 PSD3Q9NYI0 1048 aa20.93■□□□□ 0.94
CCDC3-201ENST00000378825 ZBTB1Q9Y2K1 713 aa20.93■□□□□ 0.94
CCDC3-201ENST00000378825 GSG1L2A8MUP6 293 aa20.93■□□□□ 0.94
CCDC3-201ENST00000378825 NLRP10Q86W26 655 aa20.93■□□□□ 0.94
CCDC3-201ENST00000378825 MAP3K15Q6ZN16 1313 aa20.93■□□□□ 0.94
CCDC3-201ENST00000378825 SHANK3Q9BYB0 1731 aa20.93■□□□□ 0.94
CCDC3-201ENST00000378825 TOGARAM1Q9Y4F4 1720 aa20.93■□□□□ 0.94
CCDC3-201ENST00000378825 AKNAD1Q5T1N1 836 aa20.92■□□□□ 0.94
CCDC3-201ENST00000378825 GIGYF2Q6Y7W6 1299 aaKnown RBP20.92■□□□□ 0.94
CCDC3-201ENST00000378825 CERS3Q8IU89 383 aa20.92■□□□□ 0.94
CCDC3-201ENST00000378825 MIGA1Q8NAN2 632 aa20.92■□□□□ 0.94
CCDC3-201ENST00000378825 TAB2Q9NYJ8 693 aa20.92■□□□□ 0.94
CCDC3-201ENST00000378825 KRT31Q15323 416 aa20.92■□□□□ 0.94
CCDC3-201ENST00000378825 ZMYND10O75800 440 aa20.91■□□□□ 0.94
CCDC3-201ENST00000378825 WTAPQ15007 396 aa20.91■□□□□ 0.94
CCDC3-201ENST00000378825 MFSD6Q6ZSS7 791 aa20.91■□□□□ 0.94
CCDC3-201ENST00000378825 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.91■□□□□ 0.94
CCDC3-201ENST00000378825 LCORLQ8N3X6 602 aa20.91■□□□□ 0.94
CCDC3-201ENST00000378825 RIN2Q8WYP3 895 aaPredicted RBP20.91■□□□□ 0.94
CCDC3-201ENST00000378825 ATRNO75882 1429 aa20.91■□□□□ 0.94
CCDC3-201ENST00000378825 PATL2C9JE40 543 aaKnown RBP20.91■□□□□ 0.94
CCDC3-201ENST00000378825 SRGAP2O75044 1071 aa20.91■□□□□ 0.94
CCDC3-201ENST00000378825 ZNF174Q15697 407 aa20.91■□□□□ 0.94
CCDC3-201ENST00000378825 ZNF579Q8NAF0 562 aaKnown RBP20.91■□□□□ 0.94
CCDC3-201ENST00000378825 NAPGQ99747 312 aaPredicted RBP20.91■□□□□ 0.94
CCDC3-201ENST00000378825 TRMT112Q9UI30 125 aaKnown RBP20.91■□□□□ 0.94
CCDC3-201ENST00000378825 CTAGE15A4D2H0 777 aa20.91■□□□□ 0.94
CCDC3-201ENST00000378825 CTAGE8P0CG41 777 aa20.91■□□□□ 0.94
CCDC3-201ENST00000378825 TRIM28Q13263 835 aaKnown RBP20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms