RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 SPDYE1Q8NFV5 336 aaPredicted RBP4.59□□□□□ -1.67
USH2A-202ENST00000366942 ZSCAN18Q8TBC5 510 aaPredicted RBP4.59□□□□□ -1.67
USH2A-202ENST00000366942 CACTINQ8WUQ7 758 aaKnown RBP4.59□□□□□ -1.67
USH2A-202ENST00000366942 TBC1D5Q92609 795 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 HESX1Q9UBX0 185 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 ANO9A1A5B4 782 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 USP17L12C9JPN9 530 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 USP17L21D6R901 530 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 ALDH1L1O75891 902 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 ALAS1P13196 640 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 NDUFV1P49821 464 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 MYL7Q01449 175 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 B4GALNT3Q6L9W6 998 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 L3MBTL2Q969R5 705 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 FAM122AQ96E09 287 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 EMILIN2Q9BXX0 1053 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 STARD7Q9NQZ5 370 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 STK39Q9UEW8 545 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 PHTF1Q9UMS5 762 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 PCDHB11Q9Y5F2 797 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 PRPF6O94906 941 aaKnown RBP4.59□□□□□ -1.67
USH2A-202ENST00000366942 HSPA5P11021 654 aaKnown RBP4.59□□□□□ -1.67
USH2A-202ENST00000366942 MCM2P49736 904 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 RRS1Q15050 365 aaKnown RBP4.59□□□□□ -1.67
USH2A-202ENST00000366942 HAUS3Q68CZ6 603 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 USP17L2Q6R6M4 530 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 UBE3BQ7Z3V4 1068 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 FOXP4Q8IVH2 680 aaPredicted RBP4.59□□□□□ -1.67
USH2A-202ENST00000366942 MB21D1Q8N884 522 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 OTUD5Q96G74 571 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 MCCC1Q96RQ3 725 aaPredicted RBP4.59□□□□□ -1.67
USH2A-202ENST00000366942 MED10Q9BTT4 135 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 STRIP2Q9ULQ0 834 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 PCDHB8Q9UN66 801 aa4.59□□□□□ -1.67
USH2A-202ENST00000366942 RNF123Q5XPI4 1314 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 RTL1A6NKG5 1358 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 USP6P35125 1406 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 GOLGA6L9A6NEM1 432 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 CSPG5O95196 566 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 PARP1P09874 1014 aaKnown RBP4.59□□□□□ -1.68
USH2A-202ENST00000366942 HNRNPH1P31943 449 aaKnown RBP4.59□□□□□ -1.68
USH2A-202ENST00000366942 KRT83P78385 493 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 SUZ12Q15022 739 aaKnown RBP4.59□□□□□ -1.68
USH2A-202ENST00000366942 PPP2R5BQ15173 497 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 PKN1Q16512 942 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 LETM2Q2VYF4 491 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 USPL1Q5W0Q7 1092 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 RYBPQ8N488 228 aaPredicted RBP4.59□□□□□ -1.68
USH2A-202ENST00000366942 USHBP1Q8N6Y0 703 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.59□□□□□ -1.68
USH2A-202ENST00000366942 OSCP1Q8WVF1 389 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 ATP6V0A1Q93050 837 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 RIPOR3Q96MK2 946 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 TTC25Q96NG3 672 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 RPF1Q9H9Y2 349 aaKnown RBP4.59□□□□□ -1.68
USH2A-202ENST00000366942 TOPORSQ9NS56 1045 aaPredicted RBP4.59□□□□□ -1.68
USH2A-202ENST00000366942 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.59□□□□□ -1.68
USH2A-202ENST00000366942 PCDHA1Q9Y5I3 950 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 FLT4P35916 1363 aa4.59□□□□□ -1.68
USH2A-202ENST00000366942 ZNF197O14709 1029 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 KINO60870 393 aaKnown RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 BRD1O95696 1058 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 NT5C2P49902 561 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 NAPAP54920 295 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 DRP2Q13474 957 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 ELF2Q15723 593 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 ENOX2Q16206 610 aaKnown RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 CYB5D1Q6P9G0 228 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 SESTD1Q86VW0 696 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 ATL2Q8NHH9 583 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 CCT6BQ92526 530 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 CAPNS2Q96L46 248 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 ENTPD7Q9NQZ7 604 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 ABCC2Q92887 1545 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 USP17L5A8MUK1 530 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 CAPN9O14815 690 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 SLC25A27O95847 323 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 SETSIPP0DME0 302 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 PRPHP41219 470 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 TAF1BQ53T94 588 aaPredicted RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 MYSM1Q5VVJ2 828 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 KRT79Q5XKE5 535 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 RASEFQ8IZ41 740 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 CFAP57Q96MR6 1250 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 ORAI2Q96SN7 254 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 SWAP70Q9UH65 585 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 RPTORQ8N122 1335 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 RTL9Q8NET4 1388 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 PTPRTO14522 1441 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 MAGEC1O60732 1142 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 KRT38O76015 456 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 ACBD5Q5T8D3 534 aaPredicted RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 CCDC144CPQ8IYA2 1237 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 IPO4Q8TEX9 1081 aaKnown RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 TEKT4Q8WW24 435 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 EVI5LQ96CN4 794 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 MOCOSQ96EN8 888 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 RNPC3Q96LT9 517 aaKnown RBP4.58□□□□□ -1.68
USH2A-202ENST00000366942 WRNIP1Q96S55 665 aa4.58□□□□□ -1.68
USH2A-202ENST00000366942 CGNQ9P2M7 1197 aaKnown RBP4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms