RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 TTC30AQ86WT1 665 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 LRRC43Q8N309 656 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 HVCN1Q96D96 273 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 L3MBTL3Q96JM7 780 aaPredicted RBP9.59□□□□□ -0.87
TDP1-201ENST00000335725 EIF2AQ9BY44 585 aaKnown RBP9.59□□□□□ -0.87
TDP1-201ENST00000335725 WDR62O43379 1518 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 TMEM247A6NEH6 219 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 PFKFB2O60825 505 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 LSP1P33241 339 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 CLCN2P51788 898 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 TAF11Q15544 211 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 KIFAP3Q92845 792 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 CCT8L2Q96SF2 557 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 PHF23Q9BUL5 403 aaPredicted RBP9.59□□□□□ -0.87
TDP1-201ENST00000335725 IFNKQ9P0W0 207 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 MTMR6Q9Y217 621 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 R3HDM2Q9Y2K5 976 aaKnown RBP9.59□□□□□ -0.87
TDP1-201ENST00000335725 MYOM2P54296 1465 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 ATAD2BQ9ULI0 1458 aa9.59□□□□□ -0.87
TDP1-201ENST00000335725 BIVM-ERCC5R4GMW8 1640 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 PDCP20941 246 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 PDCLQ13371 301 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 PPP1R7Q15435 360 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 TSR1Q2NL82 804 aaKnown RBP9.58□□□□□ -0.88
TDP1-201ENST00000335725 SLC44A4Q53GD3 710 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 CFAP157Q5JU67 520 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 AOPEPQ8N6M6 819 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 ATRIPQ8WXE1 791 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 NAF1Q96HR8 494 aaKnown RBP9.58□□□□□ -0.88
TDP1-201ENST00000335725 BHMT2Q9H2M3 363 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 NOB1Q9ULX3 412 aaKnown RBP9.58□□□□□ -0.88
TDP1-201ENST00000335725 SLC4A7Q9Y6M7 1214 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 CTAGE9A4FU28 777 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 ATP9BO43861 1147 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 TBC1D12O60347 775 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 HNRNPCP07910 306 aaKnown RBP eCLIP9.58□□□□□ -0.88
TDP1-201ENST00000335725 TOP1P11387 765 aaKnown RBP9.58□□□□□ -0.88
TDP1-201ENST00000335725 CCNG1P51959 295 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 ATP6V0A2Q9Y487 856 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 SSH2Q76I76 1423 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 CARMIL1Q5VZK9 1371 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.58□□□□□ -0.88
TDP1-201ENST00000335725 PPP1R37O75864 691 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 COPB2P35606 906 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 IFI16Q16666 785 aaKnown RBP9.58□□□□□ -0.88
TDP1-201ENST00000335725 RIN2Q8WYP3 895 aaPredicted RBP9.58□□□□□ -0.88
TDP1-201ENST00000335725 SMC6Q96SB8 1091 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 DUSP9Q99956 384 aaKnown RBP9.58□□□□□ -0.88
TDP1-201ENST00000335725 FAM167BQ9BTA0 163 aa9.58□□□□□ -0.88
TDP1-201ENST00000335725 MAGEC2Q9UBF1 373 aaPredicted RBP9.58□□□□□ -0.88
TDP1-201ENST00000335725 TTC21AQ8NDW8 1320 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 VPS37CA5D8V6 355 aaPredicted RBP9.57□□□□□ -0.88
TDP1-201ENST00000335725 STX10O60499 249 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 STK10O94804 968 aaKnown RBP9.57□□□□□ -0.88
TDP1-201ENST00000335725 KIF5AQ12840 1032 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 NEUROD2Q15784 382 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 ZNF554Q86TJ5 538 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 SLC15A3Q8IY34 581 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 CCDC63Q8NA47 563 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 ZNF280CQ8ND82 737 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 UHMK1Q8TAS1 419 aaKnown RBP9.57□□□□□ -0.88
TDP1-201ENST00000335725 MYCBPAPQ8TBZ2 947 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 ATP6V0A1Q93050 837 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 FAM192AQ9GZU8 254 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 RHBDL2Q9NX52 303 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 DKK3Q9UBP4 350 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 LIMCH1Q9UPQ0 1083 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 FAM135BQ49AJ0 1406 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 ASXL1Q8IXJ9 1541 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 PTGISQ16647 500 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 ME3Q16798 604 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 RC3H1Q5TC82 1133 aaKnown RBP9.57□□□□□ -0.88
TDP1-201ENST00000335725 ALS2CLQ60I27 953 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 CNBD1Q8NA66 436 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 ABHD8Q96I13 439 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 ZC3H4Q9UPT8 1303 aaKnown RBP9.57□□□□□ -0.88
TDP1-201ENST00000335725 GSTA1P08263 222 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 CDC25CP30307 473 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 PDE4BQ07343 736 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 CMPK2Q5EBM0 449 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 ZMYM1Q5SVZ6 1142 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 ZFYVE27Q5T4F4 411 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 EMC10Q5UCC4 262 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 KDM7AQ6ZMT4 941 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 EVI5LQ96CN4 794 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 MAML3Q96JK9 1138 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 RPGRIP1Q96KN7 1286 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 SYNCQ9H7C4 482 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 HYPKQ9NX55 129 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 PRELID1Q9Y255 219 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 CARD8Q9Y2G2 431 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 SPO11Q9Y5K1 396 aa9.57□□□□□ -0.88
TDP1-201ENST00000335725 STAT6P42226 847 aa9.56□□□□□ -0.88
TDP1-201ENST00000335725 BPIFB4P59827 614 aa9.56□□□□□ -0.88
TDP1-201ENST00000335725 APBA1Q02410 837 aa9.56□□□□□ -0.88
TDP1-201ENST00000335725 SMUG1Q53HV7 270 aa9.56□□□□□ -0.88
TDP1-201ENST00000335725 FAM184BQ9ULE4 1060 aa9.56□□□□□ -0.88
TDP1-201ENST00000335725 NSD2O96028 1365 aa9.56□□□□□ -0.88
TDP1-201ENST00000335725 ABCC11Q96J66 1382 aa9.56□□□□□ -0.88
TDP1-201ENST00000335725 TMEM110-MUSTN1A8MSY1 372 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 168.8 ms