RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CYP27C1Q4G0S4 372 aa5.21□□□□□ -1.58
HMGB1-201ENST00000326004 NKAPLQ5M9Q1 402 aa5.21□□□□□ -1.58
HMGB1-201ENST00000326004 GPAT2Q6NUI2 795 aa5.21□□□□□ -1.58
HMGB1-201ENST00000326004 OGFOD3Q6PK18 319 aa5.21□□□□□ -1.58
HMGB1-201ENST00000326004 TOP6BLQ8N6T0 577 aa5.21□□□□□ -1.58
HMGB1-201ENST00000326004 XAGE3Q8WTP9 111 aa5.21□□□□□ -1.58
HMGB1-201ENST00000326004 GATA6Q92908 595 aa5.21□□□□□ -1.58
HMGB1-201ENST00000326004 COX4I2Q96KJ9 171 aa5.21□□□□□ -1.58
HMGB1-201ENST00000326004 METTL22Q9BUU2 404 aaPredicted RBP5.21□□□□□ -1.58
HMGB1-201ENST00000326004 DUSP23Q9BVJ7 150 aa5.21□□□□□ -1.58
HMGB1-201ENST00000326004 ACTR10Q9NZ32 417 aa5.21□□□□□ -1.58
HMGB1-201ENST00000326004 CEP131Q9UPN4 1083 aa5.21□□□□□ -1.58
HMGB1-201ENST00000326004 SLITRK5O94991 958 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 IGLV1-40P01703 118 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 FAM87AP0C7U9 286 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 ACRP10323 421 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 FSTP19883 344 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 CYP7A1P22680 504 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 CHMP4BP1P59074 171 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 PPP2R5EQ16537 467 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 RUFY4Q6ZNE9 571 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 ANKS3Q6ZW76 656 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 TTC6Q86TZ1 520 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 DNAJB8Q8NHS0 232 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 BAHD1Q8TBE0 780 aaPredicted RBP5.2□□□□□ -1.58
HMGB1-201ENST00000326004 DHRS1Q96LJ7 313 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 SLC9A7Q96T83 725 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 KIF2CQ99661 725 aa5.2□□□□□ -1.58
HMGB1-201ENST00000326004 A0A1W2PQH9 124 aa5.19□□□□□ -1.58
HMGB1-201ENST00000326004 KLF4O43474 513 aa5.19□□□□□ -1.58
HMGB1-201ENST00000326004 DYRK3O43781 588 aa5.19□□□□□ -1.58
HMGB1-201ENST00000326004 UBOX5O94941 541 aa5.19□□□□□ -1.58
HMGB1-201ENST00000326004 EOMESO95936 686 aa5.19□□□□□ -1.58
HMGB1-201ENST00000326004 ADMP35318 185 aa5.19□□□□□ -1.58
HMGB1-201ENST00000326004 BBS9Q3SYG4 887 aa5.19□□□□□ -1.58
HMGB1-201ENST00000326004 UNC5AQ6ZN44 842 aa5.19□□□□□ -1.58
HMGB1-201ENST00000326004 PPP1R13LQ8WUF5 828 aa5.19□□□□□ -1.58
HMGB1-201ENST00000326004 MFSD14AQ96MC6 490 aa5.19□□□□□ -1.58
HMGB1-201ENST00000326004 TRIM55Q9BYV6 548 aa5.19□□□□□ -1.58
HMGB1-201ENST00000326004 PHAXQ9H814 394 aaKnown RBP5.19□□□□□ -1.58
HMGB1-201ENST00000326004 ATG3Q9NT62 314 aa5.19□□□□□ -1.58
HMGB1-201ENST00000326004 GTF2IRD1Q9UHL9 959 aa5.19□□□□□ -1.58
HMGB1-201ENST00000326004 IGF2BP3O00425 579 aaKnown RBP eCLIP5.18□□□□□ -1.58
HMGB1-201ENST00000326004 U2SURPO15042 1029 aaKnown RBP5.18□□□□□ -1.58
HMGB1-201ENST00000326004 CLEC3AO75596 197 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 LEFTY1O75610 366 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 F13BP05160 661 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 POLR2BP30876 1174 aaKnown RBP5.18□□□□□ -1.58
HMGB1-201ENST00000326004 RNF4P78317 190 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 RAB33AQ14088 237 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 FXNQ16595 210 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 DUSP27Q5VZP5 1158 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 C22orf34Q6ZV56 151 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 CDH24Q86UP0 819 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 FBXL6Q8N531 539 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 RNF141Q8WVD5 230 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 HNRNPLLQ8WVV9 542 aaKnown RBP5.18□□□□□ -1.58
HMGB1-201ENST00000326004 SMARCC1Q92922 1105 aaPredicted RBP5.18□□□□□ -1.58
HMGB1-201ENST00000326004 KREMEN1Q96MU8 473 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 SLC6A18Q96N87 628 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 DNAJC2Q99543 621 aaKnown RBP5.18□□□□□ -1.58
HMGB1-201ENST00000326004 ASPNQ9BXN1 380 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 OSBPL1AQ9BXW6 950 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 PRDM5Q9NQX1 630 aaPredicted RBP5.18□□□□□ -1.58
HMGB1-201ENST00000326004 TPX2Q9ULW0 747 aaKnown RBP5.18□□□□□ -1.58
HMGB1-201ENST00000326004 MAPK8IP1Q9UQF2 711 aa5.18□□□□□ -1.58
HMGB1-201ENST00000326004 FAM170BA6NMN3 283 aa5.17□□□□□ -1.58
HMGB1-201ENST00000326004 KIR3DL1P43629 444 aa5.17□□□□□ -1.58
HMGB1-201ENST00000326004 PMS1P54277 932 aaKnown RBP5.17□□□□□ -1.58
HMGB1-201ENST00000326004 ZYXQ15942 572 aaKnown RBP5.17□□□□□ -1.58
HMGB1-201ENST00000326004 SFRP5Q5T4F7 317 aa5.17□□□□□ -1.58
HMGB1-201ENST00000326004 ZNF765Q7L2R6 523 aa5.17□□□□□ -1.58
HMGB1-201ENST00000326004 FAM214BQ7L5A3 538 aa5.17□□□□□ -1.58
HMGB1-201ENST00000326004 RIN3Q8TB24 985 aa5.17□□□□□ -1.58
HMGB1-201ENST00000326004 SHKBP1Q8TBC3 707 aa5.17□□□□□ -1.58
HMGB1-201ENST00000326004 FBXL18Q96ME1 805 aa5.17□□□□□ -1.58
HMGB1-201ENST00000326004 TNKS2Q9H2K2 1166 aa5.17□□□□□ -1.58
HMGB1-201ENST00000326004 SIRPGQ9P1W8 387 aa5.17□□□□□ -1.58
HMGB1-201ENST00000326004 SUCOQ9UBS9 1254 aaKnown RBP5.17□□□□□ -1.58
HMGB1-201ENST00000326004 ZNF214Q9UL59 606 aaPredicted RBP5.17□□□□□ -1.58
HMGB1-201ENST00000326004 LTBP3Q9NS15 1303 aa5.17□□□□□ -1.58
HMGB1-201ENST00000326004 COL17A1Q9UMD9 1497 aaPredicted RBP5.16□□□□□ -1.58
HMGB1-201ENST00000326004 WDR64B1ANS9 1081 aa5.16□□□□□ -1.58
HMGB1-201ENST00000326004 IGSF3O75054 1194 aa5.16□□□□□ -1.58
HMGB1-201ENST00000326004 NCAPHQ15003 741 aa5.16□□□□□ -1.58
HMGB1-201ENST00000326004 NBPF12Q5TAG4 269 aaPredicted RBP5.16□□□□□ -1.58
HMGB1-201ENST00000326004 LARP1BQ659C4 914 aaKnown RBP5.16□□□□□ -1.58
HMGB1-201ENST00000326004 TMEM192Q8IY95 271 aa5.16□□□□□ -1.58
HMGB1-201ENST00000326004 PMFBP1Q8TBY8 1022 aa5.16□□□□□ -1.58
HMGB1-201ENST00000326004 MKL1Q969V6 931 aa5.16□□□□□ -1.58
HMGB1-201ENST00000326004 MKNK2Q9HBH9 465 aa5.16□□□□□ -1.58
HMGB1-201ENST00000326004 FAM86C2PA6NEL3 165 aa5.15□□□□□ -1.59
HMGB1-201ENST00000326004 GNAT3A8MTJ3 354 aa5.15□□□□□ -1.59
HMGB1-201ENST00000326004 ZNF865P0CJ78 1059 aaPredicted RBP5.15□□□□□ -1.59
HMGB1-201ENST00000326004 SLC7A5Q01650 507 aa5.15□□□□□ -1.59
HMGB1-201ENST00000326004 SERINC3Q13530 473 aa5.15□□□□□ -1.59
HMGB1-201ENST00000326004 DDR2Q16832 855 aa5.15□□□□□ -1.59
HMGB1-201ENST00000326004 VHLLQ6RSH7 139 aa5.15□□□□□ -1.59
HMGB1-201ENST00000326004 ZDHHC13Q8IUH4 622 aa5.15□□□□□ -1.59
HMGB1-201ENST00000326004 VWCEQ96DN2 955 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms