RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 KMT5BQ4FZB7 885 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 ZMYM1Q5SVZ6 1142 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 SND1Q7KZF4 910 aaKnown RBP eCLIP17.26■□□□□ 0.35
SHH-201ENST00000297261 ZNF804AQ7Z570 1209 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 PHKBQ93100 1093 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 PLIN2Q99541 437 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 EXOC1Q9NV70 894 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 NFAT5O94916 1531 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 ANKRD65E5RJM6 399 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 SLFNL1Q499Z3 407 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 MLKLQ8NB16 471 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 ZKSCAN3Q9BRR0 538 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 PRM3Q9NNZ6 103 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 GCOM1H8Y6P7 765 aaPredicted RBP17.26■□□□□ 0.35
SHH-201ENST00000297261 MYZAPP0CAP1 466 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 PDE6AP16499 860 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 SSR1P43307 286 aaKnown RBP17.26■□□□□ 0.35
SHH-201ENST00000297261 ERFEQ4G0M1 354 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 ARFGAP2Q8N6H7 521 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 MARCH10Q8NA82 808 aaPredicted RBP17.26■□□□□ 0.35
SHH-201ENST00000297261 PYM1Q9BRP8 204 aaKnown RBP17.26■□□□□ 0.35
SHH-201ENST00000297261 ZNF287Q9HBT7 754 aa17.26■□□□□ 0.35
SHH-201ENST00000297261 COL5A2P05997 1499 aaPredicted RBP17.26■□□□□ 0.35
SHH-201ENST00000297261 RNASE9P60153 205 aaKnown RBP17.25■□□□□ 0.35
SHH-201ENST00000297261 CYP21A2P08686 494 aa17.25■□□□□ 0.35
SHH-201ENST00000297261 MAP2K2P36507 400 aa17.25■□□□□ 0.35
SHH-201ENST00000297261 LONRF2Q1L5Z9 754 aa17.25■□□□□ 0.35
SHH-201ENST00000297261 B4GALNT4Q76KP1 1039 aa17.25■□□□□ 0.35
SHH-201ENST00000297261 SPAG5Q96R06 1193 aa17.25■□□□□ 0.35
SHH-201ENST00000297261 SRP68Q9UHB9 627 aaKnown RBP17.25■□□□□ 0.35
SHH-201ENST00000297261 VWA3AA6NCI4 1184 aa17.25■□□□□ 0.35
SHH-201ENST00000297261 BMP15O95972 392 aa17.25■□□□□ 0.35
SHH-201ENST00000297261 ZCCHC17Q9NP64 241 aaKnown RBP17.25■□□□□ 0.35
SHH-201ENST00000297261 UTYO14607 1347 aa17.25■□□□□ 0.35
SHH-201ENST00000297261 MAST3O60307 1309 aa17.25■□□□□ 0.35
SHH-201ENST00000297261 SMIM23A6NLE4 172 aa17.25■□□□□ 0.35
SHH-201ENST00000297261 F8W031 263 aaPredicted RBP17.25■□□□□ 0.35
SHH-201ENST00000297261 ASIC1P78348 528 aa17.25■□□□□ 0.35
SHH-201ENST00000297261 CYP2E1P05181 493 aaPredicted RBP17.24■□□□□ 0.35
SHH-201ENST00000297261 AMPD3Q01432 767 aa17.24■□□□□ 0.35
SHH-201ENST00000297261 SF3A3Q12874 501 aaKnown RBP eCLIP17.24■□□□□ 0.35
SHH-201ENST00000297261 TRIM28Q13263 835 aaKnown RBP17.24■□□□□ 0.35
SHH-201ENST00000297261 SLF2Q8IX21 1173 aa17.24■□□□□ 0.35
SHH-201ENST00000297261 VAT1LQ9HCJ6 419 aa17.24■□□□□ 0.35
SHH-201ENST00000297261 FAM196AQ6ZSG2 479 aa17.24■□□□□ 0.35
SHH-201ENST00000297261 IQUBQ8NA54 791 aa17.24■□□□□ 0.35
SHH-201ENST00000297261 CALML4Q96GE6 196 aa17.24■□□□□ 0.35
SHH-201ENST00000297261 MYL10Q9BUA6 226 aa17.24■□□□□ 0.35
SHH-201ENST00000297261 CTNND2Q9UQB3 1225 aa17.24■□□□□ 0.35
SHH-201ENST00000297261 FGAP02671 866 aa17.24■□□□□ 0.35
SHH-201ENST00000297261 NECTIN1Q15223 517 aa17.24■□□□□ 0.35
SHH-201ENST00000297261 SNAP23O00161 211 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 KRT40Q6A162 431 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 DIS3L2Q8IYB7 885 aaKnown RBP17.23■□□□□ 0.35
SHH-201ENST00000297261 TAB2Q9NYJ8 693 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 GSTO1P78417 241 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 TUBB2AQ13885 445 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 E2F4Q16254 413 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 TMTC1Q8IUR5 882 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 RABGGTAQ92696 567 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 TUBB2BQ9BVA1 445 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 SEC63Q9UGP8 760 aaKnown RBP17.23■□□□□ 0.35
SHH-201ENST00000297261 LDHBP07195 334 aaKnown RBP17.23■□□□□ 0.35
SHH-201ENST00000297261 ACTN2P35609 894 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 TBC1D8BQ0IIM8 1120 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 IFIT1BQ5T764 474 aaKnown RBP17.23■□□□□ 0.35
SHH-201ENST00000297261 CYP26C1Q6V0L0 522 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 POTEDQ86YR6 584 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 BCAS4Q8TDM0 211 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 CTNNBL1Q8WYA6 563 aaPredicted RBP17.23■□□□□ 0.35
SHH-201ENST00000297261 MCM9Q9NXL9 1143 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 ADAMTSL3P82987 1691 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 M0R2C6 588 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 UFL1O94874 794 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 CTDSPL2Q05D32 466 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 CCDC144BQ3MJ40 725 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 ATG9AQ7Z3C6 839 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 OSBP2Q969R2 916 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 PLEKHA4Q9H4M7 779 aa17.23■□□□□ 0.35
SHH-201ENST00000297261 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.23■□□□□ 0.35
SHH-201ENST00000297261 CHD2O14647 1828 aaKnown RBP17.23■□□□□ 0.35
SHH-201ENST00000297261 RIMBP2O15034 1052 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 CUTAO60888 179 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 POSTNQ15063 836 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 ZNF174Q15697 407 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 SEPT12Q8IYM1 358 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 USP27XA6NNY8 438 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 MPHOSPH10O00566 681 aaKnown RBP17.22■□□□□ 0.35
SHH-201ENST00000297261 MCM7P33993 719 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 TMTC2Q8N394 836 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 SELENOSQ9BQE4 189 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 RAB34Q9BZG1 259 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 TOPAZ1Q8N9V7 1692 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 SYNRGQ9UMZ2 1314 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 TMEM87AQ8NBN3 555 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 STX8Q9UNK0 236 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 FAN1Q9Y2M0 1017 aa17.22■□□□□ 0.35
SHH-201ENST00000297261 KIAA0753Q2KHM9 967 aa17.21■□□□□ 0.35
SHH-201ENST00000297261 RILPL1Q5EBL4 403 aa17.21■□□□□ 0.35
SHH-201ENST00000297261 CTDP1Q9Y5B0 961 aaPredicted RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms