RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 TMEM247A6NEH6 219 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 RNASE9P60153 205 aaKnown RBP15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 LRRC8CQ8TDW0 803 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 TUBB6Q9BUF5 446 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 NVLO15381 856 aaKnown RBP15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 GFAPP14136 432 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 ANLNQ9NQW6 1124 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 KRT82Q9NSB4 513 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 TBCCQ15814 346 aa15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 CCDC84Q86UT8 332 aaPredicted RBP15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 ABTB1Q969K4 478 aaPredicted RBP15.33■□□□□ 0.04
CCDC88A-201ENST00000263630 PSDA5PKW4 1024 aaPredicted RBP15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 CCNT1O60563 726 aaKnown RBP15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 SPZ1Q9BXG8 430 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 SUN1O94901 812 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 GPTP24298 496 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 NEK2P51955 445 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 DNM1Q05193 864 aaKnown RBP15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 GRM1Q13255 1194 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 HADHQ16836 314 aaKnown RBP15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 ITM2BQ9Y287 266 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 ARHGEF35A5YM69 484 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 THAP12O43422 761 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 OCM2P0CE71 109 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 OCMP0CE72 109 aaPredicted RBP15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 PICK1Q9NRD5 415 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 MIS18AQ9NYP9 233 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 GRAMD4Q6IC98 578 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 NPHP3Q7Z494 1330 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 SMC5Q8IY18 1101 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 SETDB2Q96T68 719 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 CLTAP09496 248 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 FLOT2Q14254 428 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 BSPRYQ5W0U4 402 aa15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 SRRM1Q8IYB3 904 aaKnown RBP15.32■□□□□ 0.04
CCDC88A-201ENST00000263630 HEXIM1O94992 359 aaKnown RBP15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 PDE4DQ08499 809 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 FAM95CA0A1B0GW59 222 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 SPDYE2BA6NHP3 402 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 SPDYE6P0CI01 402 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 KRT80Q6KB66 452 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 ARHGEF10LQ9HCE6 1279 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 RAB20Q9NX57 234 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 TOP2AP11388 1531 aaKnown RBP15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 GPC4O75487 556 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 GRIN1Q05586 938 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 KHDRBS2Q5VWX1 349 aaKnown RBP15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 C4orf50Q6ZRC1 276 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 FBXL13Q8NEE6 735 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 KPNA2P52292 529 aaKnown RBP15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 STAM2O75886 525 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 SPDYE1Q8NFV5 336 aaPredicted RBP15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 TBC1D32Q96NH3 1257 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 SERPINI1Q99574 410 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 VWA3AA6NCI4 1184 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 CAPN9O14815 690 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 SNX1Q13596 522 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 OLA1Q9NTK5 396 aaKnown RBP15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 SFMBT2Q5VUG0 894 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 ZSCAN32Q9NX65 697 aa15.31■□□□□ 0.04
CCDC88A-201ENST00000263630 CSGALNACT2Q8N6G5 542 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 SSH1Q8WYL5 1049 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 WWC3Q9ULE0 1092 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 FAM135AQ9P2D6 1515 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 A0A1B0GVL5 298 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 EXOC5O00471 708 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 CCDC159P0C7I6 412 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 KRT10P13645 584 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 OAS2P29728 719 aaKnown RBP15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 PAK1Q13153 545 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 CERS3Q8IU89 383 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 TTC25Q96NG3 672 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 ZSCAN26Q16670 478 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 ANKRD42Q8N9B4 389 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 RARSP54136 660 aaKnown RBP15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 OCA2Q04671 838 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 EPRSP07814 1512 aaKnown RBP15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 NECAB1Q8N987 351 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 SP4Q02446 784 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 ITKQ08881 620 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 BRD3Q15059 726 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 ZBTB41Q5SVQ8 909 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 RAPH1Q70E73 1250 aa15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 PACSIN2Q9UNF0 486 aaPredicted RBP15.3■□□□□ 0.04
CCDC88A-201ENST00000263630 TRIM37O94972 964 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 C16orf87Q6PH81 154 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 TRIM58Q8NG06 486 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 GDAP1L1Q96MZ0 367 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 SFMBT1Q9UHJ3 866 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 WIZO95785 1651 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 TTC21BQ7Z4L5 1316 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 LONRF2Q1L5Z9 754 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 OPTNQ96CV9 577 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 AZI2Q9H6S1 392 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 NR1H4Q96RI1 486 aaPredicted RBP15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 VEZTQ9HBM0 779 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 IRAK4Q9NWZ3 460 aa15.29■□□□□ 0.04
CCDC88A-201ENST00000263630 ANGPTL2Q9UKU9 493 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms