RNA–Protein interactions for RNA: ENST00000237289.8

TNFAIP3-201, Transcript of TNF alpha induced protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFAIP3, Length 4,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFAIP3-201ENST00000237289 SPP2Q13103 211 aa12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 SLFN13Q68D06 897 aa12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 DUOX1Q9NRD9 1551 aa12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 RXRAP19793 462 aa12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 HOMER1Q86YM7 354 aa12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 COL4A1P02462 1669 aa12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 SSRP1Q08945 709 aaKnown RBP12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 DGKHQ86XP1 1220 aa12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 TOMM70O94826 608 aa12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 CAP2P40123 477 aa12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 TRAF1Q13077 416 aa12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 ZKSCAN4Q969J2 545 aaPredicted RBP12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 GINM1Q9NU53 330 aa12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 RBM28Q9NW13 759 aaKnown RBP12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 ZBTB21Q9ULJ3 1066 aa12.95□□□□□ -0.34
TNFAIP3-201ENST00000237289 USP17L10C9JJH3 530 aa12.94□□□□□ -0.34
TNFAIP3-201ENST00000237289 RASA1P20936 1047 aa12.94□□□□□ -0.34
TNFAIP3-201ENST00000237289 SCYL3Q8IZE3 742 aa12.94□□□□□ -0.34
TNFAIP3-201ENST00000237289 SPICE1Q8N0Z3 855 aa12.94□□□□□ -0.34
TNFAIP3-201ENST00000237289 CEP95Q96GE4 821 aa12.94□□□□□ -0.34
TNFAIP3-201ENST00000237289 TRAF5O00463 557 aa12.94□□□□□ -0.34
TNFAIP3-201ENST00000237289 ZNF654Q8IZM8 581 aa12.94□□□□□ -0.34
TNFAIP3-201ENST00000237289 SMCR8Q8TEV9 937 aaPredicted RBP12.94□□□□□ -0.34
TNFAIP3-201ENST00000237289 CHURC1Q8WUH1 139 aa12.94□□□□□ -0.34
TNFAIP3-201ENST00000237289 DDX11Q96FC9 970 aa12.94□□□□□ -0.34
TNFAIP3-201ENST00000237289 PLS1Q14651 629 aa12.94□□□□□ -0.34
TNFAIP3-201ENST00000237289 AK9Q5TCS8 1911 aa12.94□□□□□ -0.34
TNFAIP3-201ENST00000237289 EEF2P13639 858 aaKnown RBP12.93□□□□□ -0.34
TNFAIP3-201ENST00000237289 PDCP20941 246 aa12.93□□□□□ -0.34
TNFAIP3-201ENST00000237289 INPP5BP32019 993 aa12.93□□□□□ -0.34
TNFAIP3-201ENST00000237289 MYL10Q9BUA6 226 aa12.93□□□□□ -0.34
TNFAIP3-201ENST00000237289 VPS37CA5D8V6 355 aaPredicted RBP12.93□□□□□ -0.34
TNFAIP3-201ENST00000237289 PPP2R5BQ15173 497 aa12.93□□□□□ -0.34
TNFAIP3-201ENST00000237289 TSGA10IPQ3SY00 556 aa12.93□□□□□ -0.34
TNFAIP3-201ENST00000237289 SLC26A6Q9BXS9 759 aa12.93□□□□□ -0.34
TNFAIP3-201ENST00000237289 MARCH6O60337 910 aa12.93□□□□□ -0.34
TNFAIP3-201ENST00000237289 NECAB1Q8N987 351 aa12.93□□□□□ -0.34
TNFAIP3-201ENST00000237289 HMGN5P82970 282 aaKnown RBP12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 ZNF280CQ8ND82 737 aa12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 RBM46Q8TBY0 533 aaKnown RBP12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 RRP36Q96EU6 259 aaKnown RBP12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 TBC1D12O60347 775 aa12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 FKBP1BP68106 108 aa12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 RBM27Q9P2N5 1060 aaKnown RBP12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 NMT2O60551 498 aa12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 FLOT1O75955 427 aa12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 POTEIP0CG38 1075 aa12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 POTEJP0CG39 1038 aa12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 ERO1BQ86YB8 467 aa12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 LZTS2Q9BRK4 669 aa12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 MTA3Q9BTC8 594 aa12.92□□□□□ -0.34
TNFAIP3-201ENST00000237289 ZBED4O75132 1171 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 CYB5R4Q7L1T6 521 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 MB21D2Q8IYB1 491 aaPredicted RBP12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 KIFC2Q96AC6 838 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 IPO9Q96P70 1041 aaKnown RBP12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 MTMR4Q9NYA4 1195 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 FZD1Q9UP38 647 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 TMEM232C9JQI7 657 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 NCLP19338 710 aaKnown RBP12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 OSBPP22059 807 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 SHMT1P34896 483 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 LIFRP42702 1097 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 GPATCH4Q5T3I0 446 aaKnown RBP12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 USP17L2Q6R6M4 530 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 STOX1Q6ZVD7 989 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 TMEM47Q9BQJ4 181 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 ORC3Q9UBD5 711 aaPredicted RBP12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 SH2B2O14492 632 aaPredicted RBP12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 DDAH1O94760 285 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 BMP3P12645 472 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 CCDC12Q8WUD4 166 aaPredicted RBP12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 TMX3Q96JJ7 454 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 ANP32EQ9BTT0 268 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 FRMPD2Q68DX3 1309 aaPredicted RBP12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 PPFIA3O75145 1194 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 FOXD4L5Q5VV16 416 aaPredicted RBP12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 FASTKD5Q7L8L6 764 aaKnown RBP12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 FOXD4L4Q8WXT5 416 aaPredicted RBP12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 TBC1D2Q9BYX2 928 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 NYAP2Q9P242 653 aa12.91□□□□□ -0.34
TNFAIP3-201ENST00000237289 C19orf81C9J6K1 198 aa12.9□□□□□ -0.34
TNFAIP3-201ENST00000237289 SNAPC2Q13487 334 aa12.9□□□□□ -0.34
TNFAIP3-201ENST00000237289 ENAHQ8N8S7 591 aaPredicted RBP12.9□□□□□ -0.34
TNFAIP3-201ENST00000237289 CUL5Q93034 780 aa12.9□□□□□ -0.34
TNFAIP3-201ENST00000237289 LARP1BQ659C4 914 aaKnown RBP12.9□□□□□ -0.34
TNFAIP3-201ENST00000237289 CCDC84Q86UT8 332 aaPredicted RBP12.9□□□□□ -0.34
TNFAIP3-201ENST00000237289 FANCBQ8NB91 859 aa12.9□□□□□ -0.34
TNFAIP3-201ENST00000237289 ECE1P42892 770 aa12.9□□□□□ -0.34
TNFAIP3-201ENST00000237289 HMGCS2P54868 508 aa12.9□□□□□ -0.34
TNFAIP3-201ENST00000237289 MTMR2Q13614 643 aa12.9□□□□□ -0.34
TNFAIP3-201ENST00000237289 ASPRV1Q53RT3 343 aa12.9□□□□□ -0.34
TNFAIP3-201ENST00000237289 KLRF2D3W0D1 207 aa12.89□□□□□ -0.35
TNFAIP3-201ENST00000237289 F5H6K3 240 aa12.89□□□□□ -0.35
TNFAIP3-201ENST00000237289 GOLGA6L22H0YM25 854 aa12.89□□□□□ -0.35
TNFAIP3-201ENST00000237289 GOLGA8HP0CJ92 632 aa12.89□□□□□ -0.35
TNFAIP3-201ENST00000237289 KLRC3Q07444 240 aa12.89□□□□□ -0.35
TNFAIP3-201ENST00000237289 CPXCR1Q8N123 301 aa12.89□□□□□ -0.35
TNFAIP3-201ENST00000237289 ZNF274Q96GC6 653 aaPredicted RBP12.89□□□□□ -0.35
TNFAIP3-201ENST00000237289 ZBED3Q96IU2 234 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms