RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 FHDC1Q9C0D6 1143 aaPredicted RBP21.07■□□□□ 0.96
VIM-201ENST00000224237 CFAP45Q9UL16 551 aa21.07■□□□□ 0.96
VIM-201ENST00000224237 UBE2HP62256 183 aa21.06■□□□□ 0.96
VIM-201ENST00000224237 TRIM29Q14134 588 aa21.06■□□□□ 0.96
VIM-201ENST00000224237 ATL3Q6DD88 541 aa21.06■□□□□ 0.96
VIM-201ENST00000224237 OTUD7BQ6GQQ9 843 aa21.06■□□□□ 0.96
VIM-201ENST00000224237 OGFOD1Q8N543 542 aa21.06■□□□□ 0.96
VIM-201ENST00000224237 PNMA1Q8ND90 353 aa21.06■□□□□ 0.96
VIM-201ENST00000224237 AGBL3Q8NEM8 1001 aa21.06■□□□□ 0.96
VIM-201ENST00000224237 PRMT6Q96LA8 375 aaPredicted RBP21.06■□□□□ 0.96
VIM-201ENST00000224237 AIFM3Q96NN9 605 aa21.06■□□□□ 0.96
VIM-201ENST00000224237 TDRD3Q9H7E2 651 aaKnown RBP21.06■□□□□ 0.96
VIM-201ENST00000224237 TAOK2Q9UL54 1235 aa21.06■□□□□ 0.96
VIM-201ENST00000224237 KIF5BP33176 963 aa21.05■□□□□ 0.96
VIM-201ENST00000224237 FAM198AQ9UFP1 575 aa21.05■□□□□ 0.96
VIM-201ENST00000224237 STX8Q9UNK0 236 aa21.05■□□□□ 0.96
VIM-201ENST00000224237 LTBP3Q9NS15 1303 aa21.05■□□□□ 0.96
VIM-201ENST00000224237 GADD45BO75293 160 aaPredicted RBP21.05■□□□□ 0.96
VIM-201ENST00000224237 SLURP2P0DP57 97 aa21.05■□□□□ 0.96
VIM-201ENST00000224237 AKAP17AQ02040 695 aaKnown RBP21.05■□□□□ 0.96
VIM-201ENST00000224237 TCP10Q12799 353 aa21.05■□□□□ 0.96
VIM-201ENST00000224237 TMTC3Q6ZXV5 915 aa21.05■□□□□ 0.96
VIM-201ENST00000224237 BRAPQ7Z569 592 aa21.05■□□□□ 0.96
VIM-201ENST00000224237 CMTR1Q8N1G2 835 aaKnown RBP21.05■□□□□ 0.96
VIM-201ENST00000224237 CCDC82Q8N4S0 544 aa21.05■□□□□ 0.96
VIM-201ENST00000224237 KRT40Q6A162 431 aa21.04■□□□□ 0.96
VIM-201ENST00000224237 CAVIN1Q6NZI2 390 aaKnown RBP21.04■□□□□ 0.96
VIM-201ENST00000224237 SPATA32Q96LK8 384 aa21.04■□□□□ 0.96
VIM-201ENST00000224237 ZNF396Q96N95 335 aaPredicted RBP21.04■□□□□ 0.96
VIM-201ENST00000224237 GJB4Q9NTQ9 266 aa21.04■□□□□ 0.96
VIM-201ENST00000224237 MYH6P13533 1939 aa21.04■□□□□ 0.96
VIM-201ENST00000224237 SPDYE2BA6NHP3 402 aa21.03■□□□□ 0.96
VIM-201ENST00000224237 PLEKHA8P1O95397 391 aa21.03■□□□□ 0.96
VIM-201ENST00000224237 SPDYE6P0CI01 402 aa21.03■□□□□ 0.96
VIM-201ENST00000224237 KIF23Q02241 960 aaPredicted RBP21.03■□□□□ 0.96
VIM-201ENST00000224237 FUT2Q10981 343 aa21.03■□□□□ 0.96
VIM-201ENST00000224237 CIAPIN1Q6FI81 312 aa21.03■□□□□ 0.96
VIM-201ENST00000224237 TMEM47Q9BQJ4 181 aa21.03■□□□□ 0.96
VIM-201ENST00000224237 COL2A1P02458 1487 aaPredicted RBP21.03■□□□□ 0.96
VIM-201ENST00000224237 SHTN1A0MZ66 631 aa21.03■□□□□ 0.96
VIM-201ENST00000224237 PRPF3O43395 683 aaKnown RBP21.03■□□□□ 0.96
VIM-201ENST00000224237 ENTPD3O75355 529 aa21.03■□□□□ 0.96
VIM-201ENST00000224237 GUCY1A2P33402 732 aa21.03■□□□□ 0.96
VIM-201ENST00000224237 NOVP48745 357 aa21.03■□□□□ 0.96
VIM-201ENST00000224237 TMOD2Q9NZR1 351 aa21.03■□□□□ 0.96
VIM-201ENST00000224237 TFIP11Q9UBB9 837 aaKnown RBP21.03■□□□□ 0.96
VIM-201ENST00000224237 PI4KBQ9UBF8 816 aa21.03■□□□□ 0.96
VIM-201ENST00000224237 SIPA1L1O43166 1804 aa21.02■□□□□ 0.96
VIM-201ENST00000224237 DLGAP5Q15398 846 aa21.02■□□□□ 0.96
VIM-201ENST00000224237 LEO1Q8WVC0 666 aaPredicted RBP21.02■□□□□ 0.96
VIM-201ENST00000224237 CEP95Q96GE4 821 aa21.02■□□□□ 0.96
VIM-201ENST00000224237 ATRNL1Q5VV63 1379 aa21.02■□□□□ 0.95
VIM-201ENST00000224237 UBE2Q2LH0YL09 131 aa21.01■□□□□ 0.95
VIM-201ENST00000224237 SHMT1P34896 483 aa21.01■□□□□ 0.95
VIM-201ENST00000224237 ZSCAN29Q8IWY8 852 aaPredicted RBP21.01■□□□□ 0.95
VIM-201ENST00000224237 CNTNAP5Q8WYK1 1306 aa21.01■□□□□ 0.95
VIM-201ENST00000224237 TOP1P11387 765 aaKnown RBP21.01■□□□□ 0.95
VIM-201ENST00000224237 XBP1P17861 261 aa21.01■□□□□ 0.95
VIM-201ENST00000224237 GNAQP50148 359 aa21.01■□□□□ 0.95
VIM-201ENST00000224237 GRM4Q14833 912 aa21.01■□□□□ 0.95
VIM-201ENST00000224237 SH3BP5LQ7L8J4 393 aa21.01■□□□□ 0.95
VIM-201ENST00000224237 MTMR14Q8NCE2 650 aa21.01■□□□□ 0.95
VIM-201ENST00000224237 SYAP1Q96A49 352 aaPredicted RBP21.01■□□□□ 0.95
VIM-201ENST00000224237 RBM27Q9P2N5 1060 aaKnown RBP21.01■□□□□ 0.95
VIM-201ENST00000224237 CLRN2A0PK11 232 aa21■□□□□ 0.95
VIM-201ENST00000224237 DDTLA6NHG4 134 aaPredicted RBP21■□□□□ 0.95
VIM-201ENST00000224237 AKR1B1P15121 316 aa21■□□□□ 0.95
VIM-201ENST00000224237 GNL2Q13823 731 aaKnown RBP21■□□□□ 0.95
VIM-201ENST00000224237 TNIP1Q15025 636 aa21■□□□□ 0.95
VIM-201ENST00000224237 SRBD1Q8N5C6 995 aaKnown RBP21■□□□□ 0.95
VIM-201ENST00000224237 CCDC17Q96LX7 622 aa21■□□□□ 0.95
VIM-201ENST00000224237 GNL3Q9BVP2 549 aaKnown RBP eCLIP21■□□□□ 0.95
VIM-201ENST00000224237 IGKV6D-41A0A0C4DH26 115 aa20.99■□□□□ 0.95
VIM-201ENST00000224237 KIF28PB7ZC32 967 aa20.99■□□□□ 0.95
VIM-201ENST00000224237 MMP1P03956 469 aa20.99■□□□□ 0.95
VIM-201ENST00000224237 MMP14P50281 582 aa20.99■□□□□ 0.95
VIM-201ENST00000224237 SAFBQ15424 915 aaKnown RBP eCLIP20.99■□□□□ 0.95
VIM-201ENST00000224237 TRIM34Q9BYJ4 488 aa20.99■□□□□ 0.95
VIM-201ENST00000224237 MTMR4Q9NYA4 1195 aa20.99■□□□□ 0.95
VIM-201ENST00000224237 GREB1LQ9C091 1923 aaPredicted RBP20.99■□□□□ 0.95
VIM-201ENST00000224237 FAM196BA6NMK8 535 aa20.98■□□□□ 0.95
VIM-201ENST00000224237 U2AF2P26368 475 aaKnown RBP eCLIP20.98■□□□□ 0.95
VIM-201ENST00000224237 PKN1Q16512 942 aa20.98■□□□□ 0.95
VIM-201ENST00000224237 MYSM1Q5VVJ2 828 aa20.98■□□□□ 0.95
VIM-201ENST00000224237 FOXP4Q8IVH2 680 aaPredicted RBP20.98■□□□□ 0.95
VIM-201ENST00000224237 USP28Q96RU2 1077 aa20.98■□□□□ 0.95
VIM-201ENST00000224237 DNAJC18Q9H819 358 aa20.98■□□□□ 0.95
VIM-201ENST00000224237 MAD2L2Q9UI95 211 aa20.98■□□□□ 0.95
VIM-201ENST00000224237 V9GY48 417 aaPredicted RBP20.98■□□□□ 0.95
VIM-201ENST00000224237 PPP4R3BQ5MIZ7 849 aa20.98■□□□□ 0.95
VIM-201ENST00000224237 TMEM63CQ9P1W3 806 aa20.98■□□□□ 0.95
VIM-201ENST00000224237 ZSCAN23Q3MJ62 389 aa20.97■□□□□ 0.95
VIM-201ENST00000224237 SPDYE2Q495Y8 402 aa20.97■□□□□ 0.95
VIM-201ENST00000224237 ARHGAP27Q6ZUM4 889 aa20.97■□□□□ 0.95
VIM-201ENST00000224237 METTL16Q86W50 562 aaKnown RBP20.97■□□□□ 0.95
VIM-201ENST00000224237 LZTS2Q9BRK4 669 aa20.97■□□□□ 0.95
VIM-201ENST00000224237 RCOR1Q9UKL0 485 aa20.97■□□□□ 0.95
VIM-201ENST00000224237 GOLGA6L4A6NEF3 574 aa20.96■□□□□ 0.95
VIM-201ENST00000224237 TCP10L2B9ZVM9 353 aa20.96■□□□□ 0.95
VIM-201ENST00000224237 TTLL1O95922 423 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms