RNA–Protein interactions for RNA: ENSMUST00000035283.10

Nup88-201, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,450 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-201ENSMUST00000035283 Krtap19-4Q925H7 84 aa4.28□□□□□ -1.72
Nup88-201ENSMUST00000035283 Syne1Q6ZWR6 8799 aa4.26□□□□□ -1.73
Nup88-201ENSMUST00000035283 Krtap28-13A0A087WQP5 138 aa4.23□□□□□ -1.73
Nup88-201ENSMUST00000035283 Lce3cQ91V05 98 aa4.17□□□□□ -1.74
Nup88-201ENSMUST00000035283 Sprr2iO70560 76 aa4.17□□□□□ -1.74
Nup88-201ENSMUST00000035283 Lce3dE9Q8V1 98 aa4.14□□□□□ -1.75
Nup88-201ENSMUST00000035283 Sprr2hO70559 108 aa4.11□□□□□ -1.75
Nup88-201ENSMUST00000035283 Krtap4-2B1AQ85 167 aa4.07□□□□□ -1.76
Nup88-201ENSMUST00000035283 Lce3eF8VQJ0 98 aa4.04□□□□□ -1.76
Nup88-201ENSMUST00000035283 Lce3fQ6PAI4 98 aa4.04□□□□□ -1.76
Nup88-201ENSMUST00000035283 Lce1gQ9D195 139 aa4.01□□□□□ -1.77
Nup88-201ENSMUST00000035283 A0A1Y7VJ07 166 aa4.01□□□□□ -1.77
Nup88-201ENSMUST00000035283 Sprr2eO70556 76 aa4.01□□□□□ -1.77
Nup88-201ENSMUST00000035283 2300003K06RikA2A4M0 262 aa3.98□□□□□ -1.77
Nup88-201ENSMUST00000035283 Lce3aQ497I5 98 aa3.97□□□□□ -1.77
Nup88-201ENSMUST00000035283 Sprr2fO70557 76 aa3.96□□□□□ -1.78
Nup88-201ENSMUST00000035283 Krtap4-6Q3V4B7 195 aa3.96□□□□□ -1.78
Nup88-201ENSMUST00000035283 ObscnA2AAJ9 8891 aaKnown RBP3.95□□□□□ -1.78
Nup88-201ENSMUST00000035283 Fsip2A2ARZ3 6995 aa3.93□□□□□ -1.78
Nup88-201ENSMUST00000035283 Gm11555B1AQ89 175 aa3.92□□□□□ -1.78
Nup88-201ENSMUST00000035283 Sprr2kO70562 68 aa3.86□□□□□ -1.79
Nup88-201ENSMUST00000035283 Gm11596B1AQB0 205 aa3.85□□□□□ -1.79
Nup88-201ENSMUST00000035283 Krtap4-1Q3UUY3 169 aa3.84□□□□□ -1.79
Nup88-201ENSMUST00000035283 Gm38119A0A0A6YX29 146 aa3.84□□□□□ -1.8
Nup88-201ENSMUST00000035283 Krtap4-16Q91W93 202 aa3.83□□□□□ -1.8
Nup88-201ENSMUST00000035283 Syne2Q6ZWQ0 6874 aaKnown RBP3.79□□□□□ -1.8
Nup88-201ENSMUST00000035283 Mt4P47945 62 aa3.77□□□□□ -1.81
Nup88-201ENSMUST00000035283 Lce1bQ9D149 137 aa3.72□□□□□ -1.81
Nup88-201ENSMUST00000035283 Mt1P02802 61 aaKnown RBP3.68□□□□□ -1.82
Nup88-201ENSMUST00000035283 Gm11564A2A4L9 201 aa3.67□□□□□ -1.82
Nup88-201ENSMUST00000035283 Gm11563B1AQ90 168 aa3.67□□□□□ -1.82
Nup88-201ENSMUST00000035283 Gm11595B1AQA7 289 aa3.67□□□□□ -1.82
Nup88-201ENSMUST00000035283 Krtap4-8B1AQA8 209 aa3.67□□□□□ -1.82
Nup88-201ENSMUST00000035283 Lce1lQ9D1G7 135 aa3.65□□□□□ -1.83
Nup88-201ENSMUST00000035283 Krtap4-9B1AQA9 244 aa3.63□□□□□ -1.83
Nup88-201ENSMUST00000035283 Lce1kJ3QP15 125 aa3.63□□□□□ -1.83
Nup88-201ENSMUST00000035283 Krtap4-13Q9D7P3 165 aa3.53□□□□□ -1.84
Nup88-201ENSMUST00000035283 Muc16A0A140LJ72 8478 aa3.53□□□□□ -1.84
Nup88-201ENSMUST00000035283 Gm11568A2A4M2 211 aa3.45□□□□□ -1.86
Nup88-201ENSMUST00000035283 Krtap9-1Q64526 186 aa3.45□□□□□ -1.86
Nup88-201ENSMUST00000035283 Gm10024A0A0A0MQA4 119 aa3.43□□□□□ -1.86
Nup88-201ENSMUST00000035283 Krtap6-3A0A087WQL6 57 aa3.42□□□□□ -1.86
Nup88-201ENSMUST00000035283 Krtap4-7Q9D732 168 aa3.41□□□□□ -1.86
Nup88-201ENSMUST00000035283 Macf1Q9QXZ0 7354 aaKnown RBP3.36□□□□□ -1.87
Nup88-201ENSMUST00000035283 Krtap20-2E9Q0A8 60 aa3.33□□□□□ -1.88
Nup88-201ENSMUST00000035283 Gm11559Q9D3H7 191 aa3.25□□□□□ -1.89
Nup88-201ENSMUST00000035283 Gm10153A0A1B0GRL1 320 aa3.22□□□□□ -1.89
Nup88-201ENSMUST00000035283 Krtap5-2Q9D5Z7 189 aa3.21□□□□□ -1.9
Nup88-201ENSMUST00000035283 Mt3P28184 68 aa3.18□□□□□ -1.9
Nup88-201ENSMUST00000035283 Kmt2dQ6PDK2 5588 aa3.17□□□□□ -1.9
Nup88-201ENSMUST00000035283 Hmcn1D3YXG0 5634 aa3.13□□□□□ -1.91
Nup88-201ENSMUST00000035283 A030014E15RikA0A1Y7VJV2 120 aa3.07□□□□□ -1.92
Nup88-201ENSMUST00000035283 Muc19Q6PZE0 7524 aa2.99□□□□□ -1.93
Nup88-201ENSMUST00000035283 Gm45337A0A1B0GS71 263 aa2.9□□□□□ -1.95
Nup88-201ENSMUST00000035283 Eppk1Q8R0W0 6548 aa2.89□□□□□ -1.95
Nup88-201ENSMUST00000035283 Gm4553A0A1B0GSA9 284 aa2.87□□□□□ -1.95
Nup88-201ENSMUST00000035283 Gm11554B1AQB2 190 aa2.86□□□□□ -1.95
Nup88-201ENSMUST00000035283 1110025L11RikO09048 78 aa2.85□□□□□ -1.95
Nup88-201ENSMUST00000035283 Krtap6-5Q925H3 78 aa2.85□□□□□ -1.95
Nup88-201ENSMUST00000035283 Gm2431E9Q8S1 172 aa2.83□□□□□ -1.96
Nup88-201ENSMUST00000035283 Gm40460A0A1B0GR10 244 aa2.8□□□□□ -1.96
Nup88-201ENSMUST00000035283 Gm7579A0A1B0GRJ4 243 aa2.8□□□□□ -1.96
Nup88-201ENSMUST00000035283 Krtap5-5Q2TA51 241 aa2.8□□□□□ -1.96
Nup88-201ENSMUST00000035283 Krtap5-4Q62220 223 aa2.8□□□□□ -1.96
Nup88-201ENSMUST00000035283 Gm11639A0A1D5RLM8 5808 aa2.71□□□□□ -1.98
Nup88-201ENSMUST00000035283 DstQ91ZU6 7393 aaKnown RBP2.69□□□□□ -1.98
Nup88-201ENSMUST00000035283 Sprr2bO70554 98 aa2.61□□□□□ -1.99
Nup88-201ENSMUST00000035283 Gm39115A0A1B0GSH7 232 aa2.59□□□□□ -2
Nup88-201ENSMUST00000035283 Gm45618A0A1B0GSA0 219 aa2.58□□□□□ -2
Nup88-201ENSMUST00000035283 Gpr98Q8VHN7 6298 aaKnown RBP2.52□□□□□ -2.01
Nup88-201ENSMUST00000035283 Gm10229O08631 77 aa2.51□□□□□ -2.01
Nup88-201ENSMUST00000035283 AhnakE9Q616 5656 aaKnown RBP2.47□□□□□ -2.01
Nup88-201ENSMUST00000035283 Phgr1Q8K0G7 91 aa2.42□□□□□ -2.02
Nup88-201ENSMUST00000035283 NebE9Q1W3 7152 aa2.37□□□□□ -2.03
Nup88-201ENSMUST00000035283 Gm11567Q9D141 195 aa2.36□□□□□ -2.03
Nup88-201ENSMUST00000035283 Krtap21-1Q925H4 128 aa2.36□□□□□ -2.03
Nup88-201ENSMUST00000035283 Gm29735A0A1B0GT06 219 aa2.14□□□□□ -2.07
Nup88-201ENSMUST00000035283 Krtap6-2O08884 159 aa2.09□□□□□ -2.07
Nup88-201ENSMUST00000035283 Krtap5-1Q64507 230 aa2.03□□□□□ -2.08
Nup88-201ENSMUST00000035283 Gm4559A4IF42 199 aa1.89□□□□□ -2.11
Retrieved 80 of 22,080 RNA–protein pairs in 125.5 ms