RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 GINM1Q9NU53 330 aa24.24■■□□□ 1.47
PTCD3-220ENST00000627371 ZMYM6O95789 1325 aa24.24■■□□□ 1.47
PTCD3-220ENST00000627371 MANSC4A6NHS7 340 aaPredicted RBP24.23■■□□□ 1.47
PTCD3-220ENST00000627371 MINDY4BA8MYZ0 360 aa24.23■■□□□ 1.47
PTCD3-220ENST00000627371 GDF11O95390 407 aa24.23■■□□□ 1.47
PTCD3-220ENST00000627371 ASNSP08243 561 aa24.23■■□□□ 1.47
PTCD3-220ENST00000627371 ALX1Q15699 326 aa24.23■■□□□ 1.47
PTCD3-220ENST00000627371 CERKLQ49MI3 558 aaPredicted RBP24.23■■□□□ 1.47
PTCD3-220ENST00000627371 SLC44A5Q8NCS7 719 aa24.23■■□□□ 1.47
PTCD3-220ENST00000627371 RUFY2Q8WXA3 655 aa24.23■■□□□ 1.47
PTCD3-220ENST00000627371 IL25Q9H293 177 aa24.23■■□□□ 1.47
PTCD3-220ENST00000627371 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.23■■□□□ 1.47
PTCD3-220ENST00000627371 IRF6O14896 467 aa24.22■■□□□ 1.47
PTCD3-220ENST00000627371 SREBF2Q12772 1141 aa24.22■■□□□ 1.47
PTCD3-220ENST00000627371 ZBTB21Q9ULJ3 1066 aa24.22■■□□□ 1.47
PTCD3-220ENST00000627371 CDK8P49336 464 aa24.21■■□□□ 1.47
PTCD3-220ENST00000627371 GTF2A2P52657 109 aa24.21■■□□□ 1.47
PTCD3-220ENST00000627371 JAG1P78504 1218 aa24.21■■□□□ 1.47
PTCD3-220ENST00000627371 SHROOM1Q2M3G4 852 aaPredicted RBP24.21■■□□□ 1.47
PTCD3-220ENST00000627371 MS4A4AQ96JQ5 239 aa24.21■■□□□ 1.47
PTCD3-220ENST00000627371 TBC1D2Q9BYX2 928 aa24.21■■□□□ 1.47
PTCD3-220ENST00000627371 WBP1LQ9NX94 342 aa24.21■■□□□ 1.47
PTCD3-220ENST00000627371 KCNH4Q9UQ05 1017 aa24.21■■□□□ 1.47
PTCD3-220ENST00000627371 ZHX2Q9Y6X8 837 aa24.21■■□□□ 1.47
PTCD3-220ENST00000627371 GREB1LQ9C091 1923 aaPredicted RBP24.21■■□□□ 1.47
PTCD3-220ENST00000627371 FGAP02671 866 aa24.2■■□□□ 1.46
PTCD3-220ENST00000627371 TM4SF4P48230 202 aa24.2■■□□□ 1.46
PTCD3-220ENST00000627371 INHBEP58166 350 aa24.2■■□□□ 1.46
PTCD3-220ENST00000627371 PPARAQ07869 468 aa24.2■■□□□ 1.46
PTCD3-220ENST00000627371 AFG3L2Q9Y4W6 797 aa24.2■■□□□ 1.46
PTCD3-220ENST00000627371 LOC285556D6RIA3 1793 aa24.19■■□□□ 1.46
PTCD3-220ENST00000627371 TESPA1A2RU30 521 aaPredicted RBP24.19■■□□□ 1.46
PTCD3-220ENST00000627371 USP17L5A8MUK1 530 aa24.19■■□□□ 1.46
PTCD3-220ENST00000627371 GH2P01242 217 aa24.19■■□□□ 1.46
PTCD3-220ENST00000627371 SNAPC2Q13487 334 aa24.19■■□□□ 1.46
PTCD3-220ENST00000627371 ABCB5Q2M3G0 1257 aa24.19■■□□□ 1.46
PTCD3-220ENST00000627371 CCDC84Q86UT8 332 aaPredicted RBP24.19■■□□□ 1.46
PTCD3-220ENST00000627371 DSCC1Q9BVC3 393 aa24.19■■□□□ 1.46
PTCD3-220ENST00000627371 CXCL11O14625 94 aa24.18■■□□□ 1.46
PTCD3-220ENST00000627371 SGSM2O43147 1006 aa24.18■■□□□ 1.46
PTCD3-220ENST00000627371 AS3MTQ9HBK9 375 aa24.18■■□□□ 1.46
PTCD3-220ENST00000627371 CABP5Q9NP86 173 aa24.18■■□□□ 1.46
PTCD3-220ENST00000627371 CCL15-CCL14A0A0B4J2E2 113 aa24.17■■□□□ 1.46
PTCD3-220ENST00000627371 SLC3A2P08195 630 aaKnown RBP24.17■■□□□ 1.46
PTCD3-220ENST00000627371 CETPP11597 493 aa24.17■■□□□ 1.46
PTCD3-220ENST00000627371 CCL15Q16663 113 aa24.17■■□□□ 1.46
PTCD3-220ENST00000627371 CCDC17Q96LX7 622 aa24.17■■□□□ 1.46
PTCD3-220ENST00000627371 BEGAINQ9BUH8 593 aa24.17■■□□□ 1.46
PTCD3-220ENST00000627371 ZNF287Q9HBT7 754 aa24.17■■□□□ 1.46
PTCD3-220ENST00000627371 ANAPC4Q9UJX5 808 aa24.17■■□□□ 1.46
PTCD3-220ENST00000627371 HSPA1AP0DMV8 641 aaKnown RBP24.16■■□□□ 1.46
PTCD3-220ENST00000627371 HSPA1BP0DMV9 641 aaKnown RBP24.16■■□□□ 1.46
PTCD3-220ENST00000627371 STK11IPQ8N1F8 1099 aa24.16■■□□□ 1.46
PTCD3-220ENST00000627371 ZNF280CQ8ND82 737 aa24.16■■□□□ 1.46
PTCD3-220ENST00000627371 BRI3BPQ8WY22 251 aa24.16■■□□□ 1.46
PTCD3-220ENST00000627371 WDR18Q9BV38 432 aa24.16■■□□□ 1.46
PTCD3-220ENST00000627371 MPHOSPH10O00566 681 aaKnown RBP24.15■■□□□ 1.46
PTCD3-220ENST00000627371 AKR1B1P15121 316 aa24.15■■□□□ 1.46
PTCD3-220ENST00000627371 PDE4BQ07343 736 aa24.15■■□□□ 1.46
PTCD3-220ENST00000627371 TMEM179Q6ZVK1 233 aa24.15■■□□□ 1.46
PTCD3-220ENST00000627371 IFNL1Q8IU54 200 aa24.15■■□□□ 1.46
PTCD3-220ENST00000627371 MKNK2Q9HBH9 465 aa24.15■■□□□ 1.46
PTCD3-220ENST00000627371 A0A0G2JLL6 359 aaPredicted RBP24.14■■□□□ 1.45
PTCD3-220ENST00000627371 TRIM75PA6NK02 468 aa24.14■■□□□ 1.45
PTCD3-220ENST00000627371 IGF2BP3O00425 579 aaKnown RBP eCLIP24.14■■□□□ 1.45
PTCD3-220ENST00000627371 CA12O43570 354 aa24.14■■□□□ 1.45
PTCD3-220ENST00000627371 CDC45O75419 566 aa24.14■■□□□ 1.45
PTCD3-220ENST00000627371 RASA1P20936 1047 aa24.14■■□□□ 1.45
PTCD3-220ENST00000627371 GUCY1A2P33402 732 aa24.14■■□□□ 1.45
PTCD3-220ENST00000627371 SPP2Q13103 211 aa24.14■■□□□ 1.45
PTCD3-220ENST00000627371 RAB3GAP1Q15042 981 aa24.14■■□□□ 1.45
PTCD3-220ENST00000627371 PRRT2Q7Z6L0 340 aaPredicted RBP24.14■■□□□ 1.45
PTCD3-220ENST00000627371 PTPN18Q99952 460 aa24.14■■□□□ 1.45
PTCD3-220ENST00000627371 ESYT1Q9BSJ8 1104 aa24.14■■□□□ 1.45
PTCD3-220ENST00000627371 SAGE1Q9NXZ1 904 aa24.14■■□□□ 1.45
PTCD3-220ENST00000627371 CTDSPL2Q05D32 466 aa24.13■■□□□ 1.45
PTCD3-220ENST00000627371 SEPT2Q15019 361 aa24.13■■□□□ 1.45
PTCD3-220ENST00000627371 RNF186Q9NXI6 227 aa24.13■■□□□ 1.45
PTCD3-220ENST00000627371 MYH4Q9Y623 1939 aa24.13■■□□□ 1.45
PTCD3-220ENST00000627371 PRDM1O75626 825 aa24.12■■□□□ 1.45
PTCD3-220ENST00000627371 ALDH1A1P00352 501 aa24.12■■□□□ 1.45
PTCD3-220ENST00000627371 MOGSQ13724 837 aa24.12■■□□□ 1.45
PTCD3-220ENST00000627371 OTUD7BQ6GQQ9 843 aa24.12■■□□□ 1.45
PTCD3-220ENST00000627371 CASC1Q6TDU7 716 aa24.12■■□□□ 1.45
PTCD3-220ENST00000627371 CTNNA3Q9UI47 895 aa24.12■■□□□ 1.45
PTCD3-220ENST00000627371 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.12■■□□□ 1.45
PTCD3-220ENST00000627371 BACE1P56817 501 aa24.11■■□□□ 1.45
PTCD3-220ENST00000627371 HAND2P61296 217 aa24.11■■□□□ 1.45
PTCD3-220ENST00000627371 FASTKD5Q7L8L6 764 aaKnown RBP24.11■■□□□ 1.45
PTCD3-220ENST00000627371 ZNF444Q8N0Y2 327 aaPredicted RBP24.11■■□□□ 1.45
PTCD3-220ENST00000627371 BTBD19C9JJ37 291 aa24.1■■□□□ 1.45
PTCD3-220ENST00000627371 USP17L10C9JJH3 530 aa24.1■■□□□ 1.45
PTCD3-220ENST00000627371 ZNF213O14771 459 aa24.1■■□□□ 1.45
PTCD3-220ENST00000627371 FGRP09769 529 aa24.1■■□□□ 1.45
PTCD3-220ENST00000627371 PTH1RQ03431 593 aa24.1■■□□□ 1.45
PTCD3-220ENST00000627371 MTMR2Q13614 643 aa24.1■■□□□ 1.45
PTCD3-220ENST00000627371 SH3D19Q5HYK7 790 aa24.1■■□□□ 1.45
PTCD3-220ENST00000627371 FAM43AQ8N2R8 423 aa24.1■■□□□ 1.45
PTCD3-220ENST00000627371 NBPF3Q9H094 633 aa24.1■■□□□ 1.45
PTCD3-220ENST00000627371 ZCCHC17Q9NP64 241 aaKnown RBP24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms