RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 CCDC93Q567U6 631 aa23.17■■□□□ 1.3
SHKBP1-225ENST00000600733 CSRNP2Q9H175 543 aa23.17■■□□□ 1.3
SHKBP1-225ENST00000600733 NFE2L3Q9Y4A8 694 aa23.17■■□□□ 1.3
SHKBP1-225ENST00000600733 SRPRBQ9Y5M8 271 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-225ENST00000600733 COL14A1Q05707 1796 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-225ENST00000600733 MYO1BO43795 1136 aa23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 GYG1P46976 350 aa23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 SARSP49591 514 aaKnown RBP23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 ETF1P62495 437 aaKnown RBP23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 PARP10Q53GL7 1025 aa23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 NT5DC1Q5TFE4 455 aa23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 SMARCE1Q969G3 411 aa23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 RAI14Q9P0K7 980 aa23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 DNAI1Q9UI46 699 aa23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 ERCC6LQ2NKX8 1250 aa23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 MTA3Q9BTC8 594 aa23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 VPS54Q9P1Q0 977 aa23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 BCL9LQ86UU0 1499 aa23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 MYH2Q9UKX2 1941 aa23.16■■□□□ 1.3
SHKBP1-225ENST00000600733 CYP2D7A0A087X1C5 515 aa23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 MAGEB6P1A0A0J9YX57 407 aa23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 ACTN4O43707 911 aaKnown RBP23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 ITPK1Q13572 414 aa23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 MORC3Q14149 939 aa23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 UTP14CQ5TAP6 766 aaKnown RBP23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 TMEM139Q8IV31 216 aa23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 ZNF579Q8NAF0 562 aaKnown RBP23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 MYH14Q7Z406 1995 aaKnown RBP23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 FANCGO15287 622 aa23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 RCAN1P53805 252 aa23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 TRIM65Q6PJ69 517 aa23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 ESR2Q92731 530 aa23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 MED15Q96RN5 788 aa23.15■■□□□ 1.3
SHKBP1-225ENST00000600733 PRDM1O75626 825 aa23.14■■□□□ 1.29
SHKBP1-225ENST00000600733 ZNF18P17022 549 aa23.14■■□□□ 1.29
SHKBP1-225ENST00000600733 CDK11BP21127 795 aaKnown RBP23.14■■□□□ 1.29
SHKBP1-225ENST00000600733 EARS2Q5JPH6 523 aaKnown RBP23.14■■□□□ 1.29
SHKBP1-225ENST00000600733 REXO1L1PQ8IX06 675 aa23.14■■□□□ 1.29
SHKBP1-225ENST00000600733 ENAHQ8N8S7 591 aaPredicted RBP23.14■■□□□ 1.29
SHKBP1-225ENST00000600733 MLKLQ8NB16 471 aa23.14■■□□□ 1.29
SHKBP1-225ENST00000600733 BAZ2AQ9UIF9 1905 aaKnown RBP23.14■■□□□ 1.29
SHKBP1-225ENST00000600733 RTL9Q8NET4 1388 aa23.14■■□□□ 1.29
SHKBP1-225ENST00000600733 LOC102724428A0A0B4J2F2 783 aa23.13■■□□□ 1.29
SHKBP1-225ENST00000600733 CCP110O43303 1012 aa23.13■■□□□ 1.29
SHKBP1-225ENST00000600733 SIK1P57059 783 aa23.13■■□□□ 1.29
SHKBP1-225ENST00000600733 RNF26Q9BY78 433 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-225ENST00000600733 ZHX1Q9UKY1 873 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-225ENST00000600733 CEP131Q9UPN4 1083 aa23.13■■□□□ 1.29
SHKBP1-225ENST00000600733 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.13■■□□□ 1.29
SHKBP1-225ENST00000600733 MORC2Q9Y6X9 1032 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-225ENST00000600733 CICQ96RK0 1608 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-225ENST00000600733 COL1A1P02452 1464 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-225ENST00000600733 IGSF3O75054 1194 aa23.13■■□□□ 1.29
SHKBP1-225ENST00000600733 PKN1Q16512 942 aa23.13■■□□□ 1.29
SHKBP1-225ENST00000600733 DYNLL1P63167 89 aaKnown RBP23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 AKAP17AQ02040 695 aaKnown RBP23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 TBX2Q13207 712 aaPredicted RBP23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 ENOX1Q8TC92 643 aaKnown RBP23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 RIOK1Q9BRS2 568 aaKnown RBP23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 GTPBP4Q9BZE4 634 aaKnown RBP23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 SAMSN1Q9NSI8 373 aaKnown RBP23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 ANAPC4Q9UJX5 808 aa23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 ZNF804BA4D1E1 1349 aa23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 PHLPP2Q6ZVD8 1323 aa23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 A0A087X0B3 334 aa23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 TUBB4AP04350 444 aa23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 EPSTI1Q96J88 318 aa23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 ZSCAN10Q96SZ4 725 aaPredicted RBP23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 TAF1P21675 1872 aa23.12■■□□□ 1.29
SHKBP1-225ENST00000600733 PLEKHA8P1O95397 391 aa23.11■■□□□ 1.29
SHKBP1-225ENST00000600733 ADKP55263 362 aaKnown RBP23.11■■□□□ 1.29
SHKBP1-225ENST00000600733 DHX58Q96C10 678 aa23.11■■□□□ 1.29
SHKBP1-225ENST00000600733 DACH1Q9UI36 760 aa23.11■■□□□ 1.29
SHKBP1-225ENST00000600733 TRIM75PA6NK02 468 aa23.11■■□□□ 1.29
SHKBP1-225ENST00000600733 WNT7AO00755 349 aa23.11■■□□□ 1.29
SHKBP1-225ENST00000600733 ARHGAP6O43182 974 aa23.11■■□□□ 1.29
SHKBP1-225ENST00000600733 FUT2Q10981 343 aa23.11■■□□□ 1.29
SHKBP1-225ENST00000600733 C3orf67Q6ZVT6 689 aa23.11■■□□□ 1.29
SHKBP1-225ENST00000600733 FAM177A1Q8N128 213 aaPredicted RBP23.11■■□□□ 1.29
SHKBP1-225ENST00000600733 BAG1Q99933 345 aaPredicted RBP23.11■■□□□ 1.29
SHKBP1-225ENST00000600733 PPP2R2CQ9Y2T4 447 aa23.11■■□□□ 1.29
SHKBP1-225ENST00000600733 SPECC1LQ69YQ0 1117 aa23.1■■□□□ 1.29
SHKBP1-225ENST00000600733 TC2NQ8N9U0 490 aa23.1■■□□□ 1.29
SHKBP1-225ENST00000600733 SPATA20Q8TB22 786 aa23.1■■□□□ 1.29
SHKBP1-225ENST00000600733 V9GY48 417 aaPredicted RBP23.1■■□□□ 1.29
SHKBP1-225ENST00000600733 WNK3Q9BYP7 1800 aa23.1■■□□□ 1.29
SHKBP1-225ENST00000600733 CACNA1SQ13698 1873 aa23.1■■□□□ 1.29
SHKBP1-225ENST00000600733 CASP1P29466 404 aa23.1■■□□□ 1.29
SHKBP1-225ENST00000600733 IFIT1BQ5T764 474 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-225ENST00000600733 TRIML1Q8N9V2 468 aa23.1■■□□□ 1.29
SHKBP1-225ENST00000600733 CDC5LQ99459 802 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-225ENST00000600733 PHF20Q9BVI0 1012 aa23.1■■□□□ 1.29
SHKBP1-225ENST00000600733 ZNF446Q9NWS9 450 aa23.1■■□□□ 1.29
SHKBP1-225ENST00000600733 LAMB2P55268 1798 aa23.1■■□□□ 1.29
SHKBP1-225ENST00000600733 COL16A1Q07092 1604 aaPredicted RBP23.09■■□□□ 1.29
SHKBP1-225ENST00000600733 VWA3AA6NCI4 1184 aa23.09■■□□□ 1.29
SHKBP1-225ENST00000600733 KRT2P35908 639 aa23.09■■□□□ 1.29
SHKBP1-225ENST00000600733 AFMP43652 599 aa23.09■■□□□ 1.29
SHKBP1-225ENST00000600733 NOM1Q5C9Z4 860 aaKnown RBP23.09■■□□□ 1.29
SHKBP1-225ENST00000600733 KANK3Q6NY19 840 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms