RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ZMYM1Q5SVZ6 1142 aa19.42■□□□□ 0.7
TRIM28-213ENST00000598355 GPAT2Q6NUI2 795 aa19.42■□□□□ 0.7
TRIM28-213ENST00000598355 PLEKHM2Q8IWE5 1019 aa19.42■□□□□ 0.7
TRIM28-213ENST00000598355 WDR18Q9BV38 432 aa19.42■□□□□ 0.7
TRIM28-213ENST00000598355 USP17L5A8MUK1 530 aa19.41■□□□□ 0.7
TRIM28-213ENST00000598355 GPAA1O43292 621 aa19.41■□□□□ 0.7
TRIM28-213ENST00000598355 FKTNO75072 461 aa19.41■□□□□ 0.7
TRIM28-213ENST00000598355 SH3D19Q5HYK7 790 aa19.41■□□□□ 0.7
TRIM28-213ENST00000598355 B4GALNT3Q6L9W6 998 aa19.41■□□□□ 0.7
TRIM28-213ENST00000598355 GIMAP6Q6P9H5 292 aa19.41■□□□□ 0.7
TRIM28-213ENST00000598355 ZNF280CQ8ND82 737 aa19.41■□□□□ 0.7
TRIM28-213ENST00000598355 EVI5LQ96CN4 794 aa19.41■□□□□ 0.7
TRIM28-213ENST00000598355 FSD1Q9BTV5 496 aa19.41■□□□□ 0.7
TRIM28-213ENST00000598355 TRIM34Q9BYJ4 488 aa19.41■□□□□ 0.7
TRIM28-213ENST00000598355 SLC45A1Q9Y2W3 748 aa19.41■□□□□ 0.7
TRIM28-213ENST00000598355 ROBO3Q96MS0 1386 aa19.41■□□□□ 0.7
TRIM28-213ENST00000598355 GSG1L2A8MUP6 293 aa19.4■□□□□ 0.7
TRIM28-213ENST00000598355 M0R2C6 588 aa19.4■□□□□ 0.7
TRIM28-213ENST00000598355 TLR2O60603 784 aa19.4■□□□□ 0.7
TRIM28-213ENST00000598355 GDF11O95390 407 aa19.4■□□□□ 0.7
TRIM28-213ENST00000598355 POLR3DP05423 398 aaPredicted RBP19.4■□□□□ 0.7
TRIM28-213ENST00000598355 C12orf60Q5U649 245 aa19.4■□□□□ 0.7
TRIM28-213ENST00000598355 FASTKD5Q7L8L6 764 aaKnown RBP19.4■□□□□ 0.7
TRIM28-213ENST00000598355 ZFYVE28Q9HCC9 887 aa19.4■□□□□ 0.7
TRIM28-213ENST00000598355 SLC4A4Q9Y6R1 1079 aa19.4■□□□□ 0.7
TRIM28-213ENST00000598355 TRIM75PA6NK02 468 aa19.39■□□□□ 0.69
TRIM28-213ENST00000598355 PDHXO00330 501 aa19.39■□□□□ 0.69
TRIM28-213ENST00000598355 CYP2D6P10635 497 aa19.39■□□□□ 0.69
TRIM28-213ENST00000598355 IFFO2Q5TF58 517 aa19.39■□□□□ 0.69
TRIM28-213ENST00000598355 CTU1Q7Z7A3 348 aaKnown RBP19.39■□□□□ 0.69
TRIM28-213ENST00000598355 PROCA1Q8NCQ7 364 aaPredicted RBP19.39■□□□□ 0.69
TRIM28-213ENST00000598355 AS3MTQ9HBK9 375 aa19.39■□□□□ 0.69
TRIM28-213ENST00000598355 EPB41L4AQ9HCS5 686 aaPredicted RBP19.39■□□□□ 0.69
TRIM28-213ENST00000598355 ARPP21Q9UBL0 812 aaPredicted RBP19.39■□□□□ 0.69
TRIM28-213ENST00000598355 SWAP70Q9UH65 585 aa19.39■□□□□ 0.69
TRIM28-213ENST00000598355 GNAT2P19087 354 aa19.38■□□□□ 0.69
TRIM28-213ENST00000598355 SPP2Q13103 211 aa19.38■□□□□ 0.69
TRIM28-213ENST00000598355 PARP14Q460N5 1801 aa19.38■□□□□ 0.69
TRIM28-213ENST00000598355 SBK1Q52WX2 424 aa19.38■□□□□ 0.69
TRIM28-213ENST00000598355 MCOLN1Q9GZU1 580 aa19.38■□□□□ 0.69
TRIM28-213ENST00000598355 AGTPBP1Q9UPW5 1226 aa19.38■□□□□ 0.69
TRIM28-213ENST00000598355 LAMA4Q16363 1823 aa19.37■□□□□ 0.69
TRIM28-213ENST00000598355 USP17L12C9JPN9 530 aa19.37■□□□□ 0.69
TRIM28-213ENST00000598355 USP17L21D6R901 530 aa19.37■□□□□ 0.69
TRIM28-213ENST00000598355 SMIM22K7EJ46 135 aa19.37■□□□□ 0.69
TRIM28-213ENST00000598355 GH2P01242 217 aa19.37■□□□□ 0.69
TRIM28-213ENST00000598355 GUCY1A2P33402 732 aa19.37■□□□□ 0.69
TRIM28-213ENST00000598355 CERKLQ49MI3 558 aaPredicted RBP19.37■□□□□ 0.69
TRIM28-213ENST00000598355 CTR9Q6PD62 1173 aa19.37■□□□□ 0.69
TRIM28-213ENST00000598355 C16orf86Q6ZW13 317 aa19.37■□□□□ 0.69
TRIM28-213ENST00000598355 SEC62Q99442 399 aaKnown RBP19.37■□□□□ 0.69
TRIM28-213ENST00000598355 FOXP2O15409 715 aa19.36■□□□□ 0.69
TRIM28-213ENST00000598355 PDE4AP27815 886 aa19.36■□□□□ 0.69
TRIM28-213ENST00000598355 BACE1P56817 501 aa19.36■□□□□ 0.69
TRIM28-213ENST00000598355 CAP1Q01518 475 aa19.36■□□□□ 0.69
TRIM28-213ENST00000598355 SP3Q02447 781 aa19.36■□□□□ 0.69
TRIM28-213ENST00000598355 DGKZQ13574 1117 aa19.36■□□□□ 0.69
TRIM28-213ENST00000598355 C17orf99Q6UX52 265 aa19.36■□□□□ 0.69
TRIM28-213ENST00000598355 SLC44A5Q8NCS7 719 aa19.36■□□□□ 0.69
TRIM28-213ENST00000598355 DDRGK1Q96HY6 314 aa19.36■□□□□ 0.69
TRIM28-213ENST00000598355 PARK7Q99497 189 aaKnown RBP19.36■□□□□ 0.69
TRIM28-213ENST00000598355 RLFQ13129 1914 aa19.35■□□□□ 0.69
TRIM28-213ENST00000598355 CYP2D7A0A087X1C5 515 aa19.35■□□□□ 0.69
TRIM28-213ENST00000598355 HMGCS2P54868 508 aa19.35■□□□□ 0.69
TRIM28-213ENST00000598355 ABCB5Q2M3G0 1257 aa19.35■□□□□ 0.69
TRIM28-213ENST00000598355 DYNLL2Q96FJ2 89 aa19.35■□□□□ 0.69
TRIM28-213ENST00000598355 ERO1AQ96HE7 468 aa19.35■□□□□ 0.69
TRIM28-213ENST00000598355 ABHD8Q96I13 439 aa19.35■□□□□ 0.69
TRIM28-213ENST00000598355 DOCK3Q8IZD9 2030 aa19.34■□□□□ 0.69
TRIM28-213ENST00000598355 MYH4Q9Y623 1939 aa19.34■□□□□ 0.69
TRIM28-213ENST00000598355 C19orf81C9J6K1 198 aa19.34■□□□□ 0.69
TRIM28-213ENST00000598355 MTMR2Q13614 643 aa19.34■□□□□ 0.69
TRIM28-213ENST00000598355 PKN2Q16513 984 aaKnown RBP19.34■□□□□ 0.69
TRIM28-213ENST00000598355 TREML2Q5T2D2 321 aa19.34■□□□□ 0.69
TRIM28-213ENST00000598355 GADL1Q6ZQY3 521 aa19.34■□□□□ 0.69
TRIM28-213ENST00000598355 AMOTL1Q8IY63 956 aa19.34■□□□□ 0.69
TRIM28-213ENST00000598355 C12orf42Q96LP6 360 aa19.34■□□□□ 0.69
TRIM28-213ENST00000598355 A0A0G2JMZ2 1700 aa19.34■□□□□ 0.69
TRIM28-213ENST00000598355 PATL2C9JE40 543 aaKnown RBP19.33■□□□□ 0.68
TRIM28-213ENST00000598355 USP17L10C9JJH3 530 aa19.33■□□□□ 0.68
TRIM28-213ENST00000598355 BCRP11274 1271 aa19.33■□□□□ 0.68
TRIM28-213ENST00000598355 CDK8P49336 464 aa19.33■□□□□ 0.68
TRIM28-213ENST00000598355 OTOP1Q7RTM1 612 aa19.33■□□□□ 0.68
TRIM28-213ENST00000598355 CD99L2Q8TCZ2 262 aa19.33■□□□□ 0.68
TRIM28-213ENST00000598355 HELLSQ9NRZ9 838 aa19.33■□□□□ 0.68
TRIM28-213ENST00000598355 CENPFP49454 3210 aa19.32■□□□□ 0.68
TRIM28-213ENST00000598355 A0A0D9SFI3 127 aa19.32■□□□□ 0.68
TRIM28-213ENST00000598355 CYP2C8P10632 490 aa19.32■□□□□ 0.68
TRIM28-213ENST00000598355 TMEM179Q6ZVK1 233 aa19.32■□□□□ 0.68
TRIM28-213ENST00000598355 IFNL3Q8IZI9 196 aa19.32■□□□□ 0.68
TRIM28-213ENST00000598355 CCDC17Q96LX7 622 aa19.32■□□□□ 0.68
TRIM28-213ENST00000598355 KIAA1683Q9H0B3 1180 aa19.32■□□□□ 0.68
TRIM28-213ENST00000598355 RBBP6Q7Z6E9 1792 aaKnown RBP19.32■□□□□ 0.68
TRIM28-213ENST00000598355 HOXA7P31268 230 aaPredicted RBP19.31■□□□□ 0.68
TRIM28-213ENST00000598355 LACTBP83111 547 aaPredicted RBP19.31■□□□□ 0.68
TRIM28-213ENST00000598355 SEPT2Q15019 361 aa19.31■□□□□ 0.68
TRIM28-213ENST00000598355 FAM227BQ96M60 508 aa19.31■□□□□ 0.68
TRIM28-213ENST00000598355 CABP5Q9NP86 173 aa19.31■□□□□ 0.68
TRIM28-213ENST00000598355 EMILIN3Q9NT22 766 aa19.31■□□□□ 0.68
TRIM28-213ENST00000598355 PNMA3Q9UL41 463 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms