RNA–Protein interactions for RNA: ENST00000578049.3

SEC22B-201, Transcript of SEC22 homolog B, vesicle trafficking protein (gene/pseudogene), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEC22B, Length 6,922 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC22B-201ENST00000578049 PUM3Q15397 648 aaKnown RBP11.94□□□□□ -0.5
SEC22B-201ENST00000578049 GKAP1Q5VSY0 366 aaPredicted RBP11.94□□□□□ -0.5
SEC22B-201ENST00000578049 P3H4Q92791 437 aa11.94□□□□□ -0.5
SEC22B-201ENST00000578049 MAGEF1Q9HAY2 307 aa11.94□□□□□ -0.5
SEC22B-201ENST00000578049 PHLPP2Q6ZVD8 1323 aa11.94□□□□□ -0.5
SEC22B-201ENST00000578049 WDR62O43379 1518 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 SMIM23A6NLE4 172 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 KLHL30Q0D2K2 578 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 SFMBT2Q5VUG0 894 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 PHLDB3Q6NSJ2 640 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 PNMA8AQ86V59 439 aaPredicted RBP11.93□□□□□ -0.5
SEC22B-201ENST00000578049 DBNDD2Q9BQY9 259 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 CDC23Q9UJX2 597 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 CEP104O60308 925 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 SNX16P57768 344 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 SLF1Q9BQI6 1058 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 ZKSCAN3Q9BRR0 538 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 B4E1Z4 1266 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 LUC7L3O95232 432 aaKnown RBP11.93□□□□□ -0.5
SEC22B-201ENST00000578049 KRT24Q2M2I5 525 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 WDR44Q5JSH3 913 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 G2E3Q7L622 706 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 RAB3IPQ96QF0 476 aaPredicted RBP11.93□□□□□ -0.5
SEC22B-201ENST00000578049 NT5C3AQ9H0P0 336 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 MIPOL1Q8TD10 442 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 EXOC4Q96A65 974 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 SH2D4AQ9H788 454 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 ME3Q16798 604 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 LETM2Q2VYF4 491 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 PEX26Q7Z412 305 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 RNF14Q9UBS8 474 aa11.93□□□□□ -0.5
SEC22B-201ENST00000578049 SH2D4BQ5SQS7 431 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 NELFBQ8WX92 580 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 JARID2Q92833 1246 aaPredicted RBP11.92□□□□□ -0.5
SEC22B-201ENST00000578049 FAM227BQ96M60 508 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 SETDB2Q96T68 719 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 TAB2Q9NYJ8 693 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 DDX41Q9UJV9 622 aaKnown RBP11.92□□□□□ -0.5
SEC22B-201ENST00000578049 PFKFB1P16118 471 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 DCAF17Q5H9S7 520 aaPredicted RBP11.92□□□□□ -0.5
SEC22B-201ENST00000578049 DENND2CQ68D51 928 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 EFCAB13Q8IY85 973 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 RNF10Q8N5U6 811 aaKnown RBP11.92□□□□□ -0.5
SEC22B-201ENST00000578049 BICRAQ9NZM4 1560 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 ARHGEF10O15013 1369 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 TMEM110-MUSTN1A8MSY1 372 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 LDHBP07195 334 aaKnown RBP11.92□□□□□ -0.5
SEC22B-201ENST00000578049 BCRP11274 1271 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 SLC39A6Q13433 755 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 HHATQ5VTY9 493 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 SPATA1Q5VX52 437 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 APBB1IPQ7Z5R6 666 aaPredicted RBP11.92□□□□□ -0.5
SEC22B-201ENST00000578049 SRGAP1Q7Z6B7 1085 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 AFAP1L2Q8N4X5 818 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 RGS22Q8NE09 1264 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 DDX23Q9BUQ8 820 aaKnown RBP11.92□□□□□ -0.5
SEC22B-201ENST00000578049 CAPS2Q9BXY5 557 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 LRWD1Q9UFC0 647 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 CTTNBP2Q8WZ74 1663 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 HIP1RO75146 1068 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 HOXC9P31274 260 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 CASQ2O14958 399 aaPredicted RBP11.92□□□□□ -0.5
SEC22B-201ENST00000578049 GMNNO75496 209 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 SMTNP53814 917 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 GALNT17Q6IS24 598 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 TCHPQ9BT92 498 aa11.92□□□□□ -0.5
SEC22B-201ENST00000578049 GSPT1P15170 499 aaKnown RBP11.91□□□□□ -0.5
SEC22B-201ENST00000578049 TPTE2Q6XPS3 522 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 GAS2L3Q86XJ1 694 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 GPT2Q8TD30 523 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 ANTXR1Q9H6X2 564 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 RETREG2Q8NC44 543 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 V9GY48 417 aaPredicted RBP11.91□□□□□ -0.5
SEC22B-201ENST00000578049 CCDC169A6NNP5 214 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 E7EVH7 732 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 GNGT1P63211 74 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 RBM26Q5T8P6 1007 aaKnown RBP11.91□□□□□ -0.5
SEC22B-201ENST00000578049 ANKRD20A3Q5VUR7 823 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 NCOA5Q9HCD5 579 aaKnown RBP11.91□□□□□ -0.5
SEC22B-201ENST00000578049 KLHL14Q9P2G3 628 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 FBLN1P23142 703 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 PIK3AP1Q6ZUJ8 805 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 NOSTRINQ8IVI9 506 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 ASIC3Q9UHC3 531 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 PNMA6EA0A0J9YXQ4 647 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 BCAS4Q8TDM0 211 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 RUNDC3BQ96NL0 473 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 RTEL1Q9NZ71 1219 aa11.91□□□□□ -0.5
SEC22B-201ENST00000578049 RGS16O15492 202 aaPredicted RBP11.9□□□□□ -0.5
SEC22B-201ENST00000578049 TRPC3Q13507 836 aa11.9□□□□□ -0.5
SEC22B-201ENST00000578049 DZIP3Q86Y13 1208 aaKnown RBP11.9□□□□□ -0.5
SEC22B-201ENST00000578049 E7EWF7 191 aa11.9□□□□□ -0.5
SEC22B-201ENST00000578049 TROVE2P10155 538 aaKnown RBP eCLIP11.9□□□□□ -0.5
SEC22B-201ENST00000578049 IWS1Q96ST2 819 aa11.9□□□□□ -0.5
SEC22B-201ENST00000578049 NIP7Q9Y221 180 aaKnown RBP eCLIP11.9□□□□□ -0.5
SEC22B-201ENST00000578049 PCDH11XQ9BZA7 1347 aa11.9□□□□□ -0.5
SEC22B-201ENST00000578049 PCDH11YQ9BZA8 1340 aa11.9□□□□□ -0.5
SEC22B-201ENST00000578049 I3L4J1 428 aa11.9□□□□□ -0.5
SEC22B-201ENST00000578049 VPS52Q8N1B4 723 aa11.9□□□□□ -0.5
SEC22B-201ENST00000578049 USP28Q96RU2 1077 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms