RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TLR7Q9NYK1 1049 aaKnown RBP25.78■■□□□ 1.72
VPS53-216ENST00000574029 RBM27Q9P2N5 1060 aaKnown RBP25.78■■□□□ 1.72
VPS53-216ENST00000574029 C19orf81C9J6K1 198 aa25.77■■□□□ 1.72
VPS53-216ENST00000574029 RLBP1P12271 317 aa25.77■■□□□ 1.72
VPS53-216ENST00000574029 EAF2Q96CJ1 260 aaPredicted RBP25.77■■□□□ 1.72
VPS53-216ENST00000574029 CCDC8Q9H0W5 538 aaPredicted RBP25.77■■□□□ 1.72
VPS53-216ENST00000574029 PRO3102Q9H379 93 aa25.77■■□□□ 1.72
VPS53-216ENST00000574029 TMOD4Q9NZQ9 345 aa25.77■■□□□ 1.72
VPS53-216ENST00000574029 CEP290O15078 2479 aa25.77■■□□□ 1.72
VPS53-216ENST00000574029 HMGCRP04035 888 aa25.76■■□□□ 1.71
VPS53-216ENST00000574029 DYNLL1P63167 89 aaKnown RBP25.76■■□□□ 1.71
VPS53-216ENST00000574029 IRX3P78415 501 aaPredicted RBP25.76■■□□□ 1.71
VPS53-216ENST00000574029 SHROOM1Q2M3G4 852 aaPredicted RBP25.76■■□□□ 1.71
VPS53-216ENST00000574029 ITPRIPQ8IWB1 547 aa25.76■■□□□ 1.71
VPS53-216ENST00000574029 TRIM34Q9BYJ4 488 aa25.76■■□□□ 1.71
VPS53-216ENST00000574029 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.76■■□□□ 1.71
VPS53-216ENST00000574029 ZBTB21Q9ULJ3 1066 aa25.76■■□□□ 1.71
VPS53-216ENST00000574029 MYH1P12882 1939 aa25.76■■□□□ 1.71
VPS53-216ENST00000574029 USP17L10C9JJH3 530 aa25.75■■□□□ 1.71
VPS53-216ENST00000574029 GDF11O95390 407 aa25.75■■□□□ 1.71
VPS53-216ENST00000574029 CYP7A1P22680 504 aa25.75■■□□□ 1.71
VPS53-216ENST00000574029 P2RX7Q99572 595 aaKnown RBP25.75■■□□□ 1.71
VPS53-216ENST00000574029 SAP30BPQ9UHR5 308 aaKnown RBP25.75■■□□□ 1.71
VPS53-216ENST00000574029 HLA-DOAP06340 250 aa25.74■■□□□ 1.71
VPS53-216ENST00000574029 HERVK_113P62684 666 aa25.73■■□□□ 1.71
VPS53-216ENST00000574029 HNRNPUQ00839 825 aaKnown RBP eCLIP25.73■■□□□ 1.71
VPS53-216ENST00000574029 CERS3Q8IU89 383 aa25.73■■□□□ 1.71
VPS53-216ENST00000574029 ALPK3Q96L96 1907 aa25.73■■□□□ 1.71
VPS53-216ENST00000574029 RPTORQ8N122 1335 aa25.72■■□□□ 1.71
VPS53-216ENST00000574029 EVI5O60447 810 aa25.72■■□□□ 1.71
VPS53-216ENST00000574029 IDH1O75874 414 aaKnown RBP25.72■■□□□ 1.71
VPS53-216ENST00000574029 CEP85Q6P2H3 762 aa25.72■■□□□ 1.71
VPS53-216ENST00000574029 PAWRQ96IZ0 340 aaKnown RBP25.72■■□□□ 1.71
VPS53-216ENST00000574029 TXNRD2Q9NNW7 524 aa25.72■■□□□ 1.71
VPS53-216ENST00000574029 TRIM32Q13049 653 aa25.71■■□□□ 1.71
VPS53-216ENST00000574029 ANKLE1Q8NAG6 615 aa25.71■■□□□ 1.71
VPS53-216ENST00000574029 MIGA1Q8NAN2 632 aa25.71■■□□□ 1.71
VPS53-216ENST00000574029 GPRC5AQ8NFJ5 357 aa25.71■■□□□ 1.71
VPS53-216ENST00000574029 HMX1Q9NP08 348 aaPredicted RBP25.71■■□□□ 1.71
VPS53-216ENST00000574029 RBPJLQ9UBG7 517 aa25.71■■□□□ 1.71
VPS53-216ENST00000574029 TRIOBPQ9H2D6 2365 aa25.7■■□□□ 1.71
VPS53-216ENST00000574029 PEX10O60683 326 aa25.7■■□□□ 1.7
VPS53-216ENST00000574029 TATDN1Q6P1N9 297 aa25.7■■□□□ 1.7
VPS53-216ENST00000574029 TMED8Q6PL24 325 aaPredicted RBP25.7■■□□□ 1.7
VPS53-216ENST00000574029 NECAB2Q7Z6G3 386 aa25.7■■□□□ 1.7
VPS53-216ENST00000574029 MAGEB6Q8N7X4 407 aa25.7■■□□□ 1.7
VPS53-216ENST00000574029 TRIB2Q92519 343 aa25.7■■□□□ 1.7
VPS53-216ENST00000574029 EMILIN3Q9NT22 766 aa25.7■■□□□ 1.7
VPS53-216ENST00000574029 USP17L2Q6R6M4 530 aa25.69■■□□□ 1.7
VPS53-216ENST00000574029 DIS3LQ8TF46 1054 aaKnown RBP25.69■■□□□ 1.7
VPS53-216ENST00000574029 GTF3C2Q8WUA4 911 aaPredicted RBP25.69■■□□□ 1.7
VPS53-216ENST00000574029 EHD4Q9H223 541 aa25.69■■□□□ 1.7
VPS53-216ENST00000574029 ANTXR1Q9H6X2 564 aa25.69■■□□□ 1.7
VPS53-216ENST00000574029 NDUFB9Q9Y6M9 179 aa25.69■■□□□ 1.7
VPS53-216ENST00000574029 GH2P01242 217 aa25.68■■□□□ 1.7
VPS53-216ENST00000574029 XRCC5P13010 732 aaKnown RBP25.68■■□□□ 1.7
VPS53-216ENST00000574029 CYP2B6P20813 491 aa25.68■■□□□ 1.7
VPS53-216ENST00000574029 USP5P45974 858 aa25.68■■□□□ 1.7
VPS53-216ENST00000574029 MAP3K21Q5TCX8 1036 aa25.68■■□□□ 1.7
VPS53-216ENST00000574029 ERC1Q8IUD2 1116 aa25.68■■□□□ 1.7
VPS53-216ENST00000574029 SOCS4Q8WXH5 440 aa25.68■■□□□ 1.7
VPS53-216ENST00000574029 NUDT12Q9BQG2 462 aa25.68■■□□□ 1.7
VPS53-216ENST00000574029 MAPK4P31152 587 aa25.67■■□□□ 1.7
VPS53-216ENST00000574029 ERVK-9P63128 1117 aa25.67■■□□□ 1.7
VPS53-216ENST00000574029 ERVK-24P63145 666 aa25.67■■□□□ 1.7
VPS53-216ENST00000574029 MAP3K12Q12852 859 aa25.67■■□□□ 1.7
VPS53-216ENST00000574029 Q3C1V9 767 aa25.67■■□□□ 1.7
VPS53-216ENST00000574029 POTEEQ6S8J3 1075 aa25.67■■□□□ 1.7
VPS53-216ENST00000574029 C12orf42Q96LP6 360 aa25.67■■□□□ 1.7
VPS53-216ENST00000574029 SERPINB13Q9UIV8 391 aa25.67■■□□□ 1.7
VPS53-216ENST00000574029 EXOC6BQ9Y2D4 811 aa25.67■■□□□ 1.7
VPS53-216ENST00000574029 DDX60LQ5H9U9 1706 aaKnown RBP25.66■■□□□ 1.7
VPS53-216ENST00000574029 AACSQ86V21 672 aa25.66■■□□□ 1.7
VPS53-216ENST00000574029 USP6NLQ92738 828 aa25.66■■□□□ 1.7
VPS53-216ENST00000574029 A0A1W2PPC1 479 aa25.65■■□□□ 1.7
VPS53-216ENST00000574029 MNX1P50219 401 aaPredicted RBP25.65■■□□□ 1.7
VPS53-216ENST00000574029 TTC6Q86TZ1 520 aa25.65■■□□□ 1.7
VPS53-216ENST00000574029 MIER1Q8N108 512 aa25.65■■□□□ 1.7
VPS53-216ENST00000574029 PORCNQ9H237 461 aa25.65■■□□□ 1.7
VPS53-216ENST00000574029 OGDHLQ9ULD0 1010 aa25.65■■□□□ 1.7
VPS53-216ENST00000574029 PDE3AQ14432 1141 aa25.64■■□□□ 1.7
VPS53-216ENST00000574029 GPR142Q7Z601 462 aa25.64■■□□□ 1.7
VPS53-216ENST00000574029 TRMT44Q8IYL2 757 aaKnown RBP25.64■■□□□ 1.7
VPS53-216ENST00000574029 RIOK1Q9BRS2 568 aaKnown RBP25.64■■□□□ 1.7
VPS53-216ENST00000574029 NBPF3Q9H094 633 aa25.64■■□□□ 1.7
VPS53-216ENST00000574029 PRKAR2AP13861 404 aaKnown RBP25.63■■□□□ 1.69
VPS53-216ENST00000574029 CERKLQ49MI3 558 aaPredicted RBP25.63■■□□□ 1.69
VPS53-216ENST00000574029 MORN1Q5T089 497 aa25.63■■□□□ 1.69
VPS53-216ENST00000574029 PANK1Q8TE04 598 aa25.63■■□□□ 1.69
VPS53-216ENST00000574029 PAGR1Q9BTK6 254 aa25.63■■□□□ 1.69
VPS53-216ENST00000574029 NAV1Q8NEY1 1877 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 USP17L15C9J2P7 530 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 USP17L13C9JLJ4 530 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 USP17L11C9JVI0 530 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 USP17L18D6R9N7 530 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 USP17L22D6RA61 530 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 USP17L17D6RBQ6 530 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 USP17L19D6RCP7 530 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 USP17L20D6RJB6 530 aa25.62■■□□□ 1.69
VPS53-216ENST00000574029 USP17L24Q0WX57 530 aa25.62■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms