RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ANTXR1Q9H6X2 564 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 TXNRD2Q9NNW7 524 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 PAK6Q9NQU5 681 aaPredicted RBP8.25□□□□□ -1.09
VPS53-213ENST00000572334 PI4KBQ9UBF8 816 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 HERC5Q9UII4 1024 aaKnown RBP8.25□□□□□ -1.09
VPS53-213ENST00000572334 PALD1Q9ULE6 856 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 NDUFB9Q9Y6M9 179 aa8.25□□□□□ -1.09
VPS53-213ENST00000572334 HOXA7P31268 230 aaPredicted RBP8.24□□□□□ -1.09
VPS53-213ENST00000572334 MNX1P50219 401 aaPredicted RBP8.24□□□□□ -1.09
VPS53-213ENST00000572334 BACE1P56817 501 aa8.24□□□□□ -1.09
VPS53-213ENST00000572334 UBXN2AP68543 259 aa8.24□□□□□ -1.09
VPS53-213ENST00000572334 EVX2Q03828 476 aa8.24□□□□□ -1.09
VPS53-213ENST00000572334 TRIM32Q13049 653 aa8.24□□□□□ -1.09
VPS53-213ENST00000572334 MTMR2Q13614 643 aa8.24□□□□□ -1.09
VPS53-213ENST00000572334 CCDC158Q5M9N0 1113 aa8.24□□□□□ -1.09
VPS53-213ENST00000572334 NKX2-3Q8TAU0 364 aa8.24□□□□□ -1.09
VPS53-213ENST00000572334 SMCR8Q8TEV9 937 aaPredicted RBP8.24□□□□□ -1.09
VPS53-213ENST00000572334 P2RX7Q99572 595 aaKnown RBP8.24□□□□□ -1.09
VPS53-213ENST00000572334 TBC1D2Q9BYX2 928 aa8.24□□□□□ -1.09
VPS53-213ENST00000572334 CRISPLD2Q9H0B8 497 aa8.24□□□□□ -1.09
VPS53-213ENST00000572334 DHX36Q9H2U1 1008 aaKnown RBP8.24□□□□□ -1.09
VPS53-213ENST00000572334 MORF4L1Q9UBU8 362 aa8.24□□□□□ -1.09
VPS53-213ENST00000572334 GDF11O95390 407 aa8.23□□□□□ -1.09
VPS53-213ENST00000572334 BAG3O95817 575 aa8.23□□□□□ -1.09
VPS53-213ENST00000572334 ASNSP08243 561 aa8.23□□□□□ -1.09
VPS53-213ENST00000572334 GCLCP48506 637 aaPredicted RBP8.23□□□□□ -1.09
VPS53-213ENST00000572334 HNRNPUQ00839 825 aaKnown RBP eCLIP8.23□□□□□ -1.09
VPS53-213ENST00000572334 Q3C1V9 767 aa8.23□□□□□ -1.09
VPS53-213ENST00000572334 TATDN1Q6P1N9 297 aa8.23□□□□□ -1.09
VPS53-213ENST00000572334 FOXP4Q8IVH2 680 aaPredicted RBP8.23□□□□□ -1.09
VPS53-213ENST00000572334 ITPRIPQ8IWB1 547 aa8.23□□□□□ -1.09
VPS53-213ENST00000572334 PANK1Q8TE04 598 aa8.23□□□□□ -1.09
VPS53-213ENST00000572334 RIOK1Q9BRS2 568 aaKnown RBP8.23□□□□□ -1.09
VPS53-213ENST00000572334 EMILIN3Q9NT22 766 aa8.23□□□□□ -1.09
VPS53-213ENST00000572334 RBM27Q9P2N5 1060 aaKnown RBP8.23□□□□□ -1.09
VPS53-213ENST00000572334 RBPJLQ9UBG7 517 aa8.23□□□□□ -1.09
VPS53-213ENST00000572334 BIN2Q9UBW5 565 aaPredicted RBP8.23□□□□□ -1.09
VPS53-213ENST00000572334 SAP30BPQ9UHR5 308 aaKnown RBP8.23□□□□□ -1.09
VPS53-213ENST00000572334 PNMA3Q9UL41 463 aa8.23□□□□□ -1.09
VPS53-213ENST00000572334 ZBTB21Q9ULJ3 1066 aa8.23□□□□□ -1.09
VPS53-213ENST00000572334 U3KPZ7 1027 aaPredicted RBP8.23□□□□□ -1.09
VPS53-213ENST00000572334 SMCHD1A6NHR9 2005 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 COL11A1P12107 1806 aaPredicted RBP8.22□□□□□ -1.09
VPS53-213ENST00000572334 DNAH12Q6ZR08 3092 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 COL6A3P12111 3177 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 IGSF3O75054 1194 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 CNMDO75829 334 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 FARP2O94887 1054 aaPredicted RBP8.22□□□□□ -1.09
VPS53-213ENST00000572334 PLCG2P16885 1265 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 CYP7A1P22680 504 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 OS9Q13438 667 aaPredicted RBP8.22□□□□□ -1.09
VPS53-213ENST00000572334 CHRDL2Q6WN34 429 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 SIRT2Q8IXJ6 389 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 FTSJ3Q8IY81 847 aaKnown RBP8.22□□□□□ -1.09
VPS53-213ENST00000572334 MIGA1Q8NAN2 632 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 DIS3LQ8TF46 1054 aaKnown RBP8.22□□□□□ -1.09
VPS53-213ENST00000572334 TRIB2Q92519 343 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 USP6NLQ92738 828 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 DPF3Q92784 378 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 DEFB118Q96PH6 123 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 ANP32EQ9BTT0 268 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 AS3MTQ9HBK9 375 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 EXOC6BQ9Y2D4 811 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 A0A0G2JMZ2 1700 aa8.22□□□□□ -1.09
VPS53-213ENST00000572334 C19orf81C9J6K1 198 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 IDH1O75874 414 aaKnown RBP8.21□□□□□ -1.1
VPS53-213ENST00000572334 GH2P01242 217 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 GUCY1A2P33402 732 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 PLCD1P51178 756 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 HERVK_113P62684 666 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 GABPAQ06546 454 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 MAP3K21Q5TCX8 1036 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 MAGEB6Q8N7X4 407 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 COA7Q96BR5 231 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 PAWRQ96IZ0 340 aaKnown RBP8.21□□□□□ -1.1
VPS53-213ENST00000572334 NOL10Q9BSC4 688 aaKnown RBP8.21□□□□□ -1.1
VPS53-213ENST00000572334 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.21□□□□□ -1.1
VPS53-213ENST00000572334 BCL11AQ9H165 835 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 EHD4Q9H223 541 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 PORCNQ9H237 461 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 GINM1Q9NU53 330 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 ZBED9Q6R2W3 1325 aa8.21□□□□□ -1.1
VPS53-213ENST00000572334 GREB1LQ9C091 1923 aaPredicted RBP8.21□□□□□ -1.1
VPS53-213ENST00000572334 TCRBV5S4A2TA0A5A2 114 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 USP17L10C9JJH3 530 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 SMIM22K7EJ46 135 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 TFRCP02786 760 aaKnown RBP8.2□□□□□ -1.1
VPS53-213ENST00000572334 HMGCRP04035 888 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 SHMT1P34896 483 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 ERVK-9P63128 1117 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 ERVK-24P63145 666 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 PABPC4Q13310 644 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS53-213ENST00000572334 MORN1Q5T089 497 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 AACSQ86V21 672 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 RHPN1Q8TCX5 695 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 ACER1Q8TDN7 264 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 C12orf42Q96LP6 360 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 HTATIP2Q9BUP3 242 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 IL1RAPL2Q9NP60 686 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 TAOK2Q9UL54 1235 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms