RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 TTC6Q86TZ1 520 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 SUPT20HQ8NEM7 779 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 FBXO18Q8NFZ0 1043 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 MTA3Q9BTC8 594 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 ZNF277Q9NRM2 450 aaPredicted RBP8.22□□□□□ -1.09
SMG1-215ENST00000568239 TMEM63CQ9P1W3 806 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 STX8Q9UNK0 236 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 CRKP46108 304 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 AKAP17AQ02040 695 aaKnown RBP8.22□□□□□ -1.09
SMG1-215ENST00000568239 KIAA2012Q0VF49 1180 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 NTRK3Q16288 839 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 ZSCAN23Q3MJ62 389 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 LARGE2Q8N3Y3 721 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 PIBF1Q8WXW3 757 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 FTOQ9C0B1 505 aaKnown RBP eCLIP8.22□□□□□ -1.09
SMG1-215ENST00000568239 SCAND2PQ9GZW5 306 aaPredicted RBP8.22□□□□□ -1.09
SMG1-215ENST00000568239 ZNF287Q9HBT7 754 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 PCDHAC2Q9Y5I4 1007 aa8.22□□□□□ -1.09
SMG1-215ENST00000568239 QSER1Q2KHR3 1735 aa8.21□□□□□ -1.09
SMG1-215ENST00000568239 hCG_1642624A0A1W2PR95 340 aa8.21□□□□□ -1.09
SMG1-215ENST00000568239 CACNB3P54284 484 aa8.21□□□□□ -1.09
SMG1-215ENST00000568239 CTCFLQ8NI51 663 aaPredicted RBP8.21□□□□□ -1.09
SMG1-215ENST00000568239 KAT14Q9H8E8 782 aa8.21□□□□□ -1.09
SMG1-215ENST00000568239 CFAP45Q9UL16 551 aa8.21□□□□□ -1.09
SMG1-215ENST00000568239 LAMB1P07942 1786 aa8.21□□□□□ -1.1
SMG1-215ENST00000568239 C10orf71Q711Q0 1435 aa8.21□□□□□ -1.1
SMG1-215ENST00000568239 NAV1Q8NEY1 1877 aa8.21□□□□□ -1.1
SMG1-215ENST00000568239 SYCE3A1L190 88 aa8.21□□□□□ -1.1
SMG1-215ENST00000568239 PSDA5PKW4 1024 aaPredicted RBP8.21□□□□□ -1.1
SMG1-215ENST00000568239 IFNAR1P17181 557 aa8.21□□□□□ -1.1
SMG1-215ENST00000568239 GUCY1A2P33402 732 aa8.21□□□□□ -1.1
SMG1-215ENST00000568239 CDK8P49336 464 aa8.21□□□□□ -1.1
SMG1-215ENST00000568239 TCP10Q12799 353 aa8.21□□□□□ -1.1
SMG1-215ENST00000568239 DACT2Q5SW24 774 aa8.21□□□□□ -1.1
SMG1-215ENST00000568239 CDC42EP5Q6NZY7 148 aa8.21□□□□□ -1.1
SMG1-215ENST00000568239 ZSCAN29Q8IWY8 852 aaPredicted RBP8.21□□□□□ -1.1
SMG1-215ENST00000568239 RTKN2Q8IZC4 609 aa8.21□□□□□ -1.1
SMG1-215ENST00000568239 TMEM87AQ8NBN3 555 aa8.21□□□□□ -1.1
SMG1-215ENST00000568239 SYAP1Q96A49 352 aaPredicted RBP8.21□□□□□ -1.1
SMG1-215ENST00000568239 SCN9AQ15858 1988 aa8.21□□□□□ -1.1
SMG1-215ENST00000568239 KIAA1551Q9HCM1 1747 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 MYH1P12882 1939 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 RAD17O75943 681 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 FMNL1O95466 1100 aaPredicted RBP8.2□□□□□ -1.1
SMG1-215ENST00000568239 KCNA3P22001 575 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 KRT40Q6A162 431 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 HHIPL2Q6UWX4 724 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 BICD2Q8TD16 824 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 LEO1Q8WVC0 666 aaPredicted RBP8.2□□□□□ -1.1
SMG1-215ENST00000568239 MTFR1LQ9H019 292 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 DDX4Q9NQI0 724 aaKnown RBP8.2□□□□□ -1.1
SMG1-215ENST00000568239 PIM2Q9P1W9 311 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 WDHD1O75717 1129 aaPredicted RBP8.2□□□□□ -1.1
SMG1-215ENST00000568239 TROAPQ12815 778 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 NFIAQ12857 509 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 APOBEC3HQ6NTF7 200 aaKnown RBP8.2□□□□□ -1.1
SMG1-215ENST00000568239 GAS2L3Q86XJ1 694 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 CRACR2BQ8N4Y2 399 aaPredicted RBP8.2□□□□□ -1.1
SMG1-215ENST00000568239 WASF1Q92558 559 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 ZNF396Q96N95 335 aaPredicted RBP8.2□□□□□ -1.1
SMG1-215ENST00000568239 USP28Q96RU2 1077 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 IL17RBQ9NRM6 502 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 CDK5RAP2Q96SN8 1893 aa8.2□□□□□ -1.1
SMG1-215ENST00000568239 YDJCA8MPS7 323 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 PLEKHA8P1O95397 391 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 CALM1P0DP23 149 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 CALM2P0DP24 149 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 CALM3P0DP25 149 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 RASA1P20936 1047 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 C16orf86Q6ZW13 317 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 KCNJ14Q9UNX9 436 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 V9GY48 417 aaPredicted RBP8.19□□□□□ -1.1
SMG1-215ENST00000568239 KIF28PB7ZC32 967 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 DDAH1O94760 285 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 DEXIO95424 95 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 SF3A1Q15459 793 aaKnown RBP8.19□□□□□ -1.1
SMG1-215ENST00000568239 L1TD1Q5T7N2 865 aaKnown RBP8.19□□□□□ -1.1
SMG1-215ENST00000568239 ILDR1Q86SU0 546 aaPredicted RBP8.19□□□□□ -1.1
SMG1-215ENST00000568239 PNMA1Q8ND90 353 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 RNF216Q9NWF9 866 aaPredicted RBP8.19□□□□□ -1.1
SMG1-215ENST00000568239 ADAMTSL1Q8N6G6 1762 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 HLA-DOAP06340 250 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 KIF23Q02241 960 aaPredicted RBP8.19□□□□□ -1.1
SMG1-215ENST00000568239 PPP2R5BQ15173 497 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 SAFBQ15424 915 aaKnown RBP eCLIP8.19□□□□□ -1.1
SMG1-215ENST00000568239 DALRD3Q5D0E6 543 aaKnown RBP8.19□□□□□ -1.1
SMG1-215ENST00000568239 RCSD1Q6JBY9 416 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 DGKHQ86XP1 1220 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 ZDHHC15Q96MV8 337 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 RBM28Q9NW13 759 aaKnown RBP8.19□□□□□ -1.1
SMG1-215ENST00000568239 SERPINB13Q9UIV8 391 aa8.19□□□□□ -1.1
SMG1-215ENST00000568239 ZBTB12Q9Y330 459 aaPredicted RBP8.19□□□□□ -1.1
SMG1-215ENST00000568239 MYH6P13533 1939 aa8.18□□□□□ -1.1
SMG1-215ENST00000568239 ROBO3Q96MS0 1386 aa8.18□□□□□ -1.1
SMG1-215ENST00000568239 STK36Q9NRP7 1315 aa8.18□□□□□ -1.1
SMG1-215ENST00000568239 MPHOSPH10O00566 681 aaKnown RBP8.18□□□□□ -1.1
SMG1-215ENST00000568239 SLURP2P0DP57 97 aa8.18□□□□□ -1.1
SMG1-215ENST00000568239 ME1P48163 572 aa8.18□□□□□ -1.1
SMG1-215ENST00000568239 RCAN1P53805 252 aa8.18□□□□□ -1.1
SMG1-215ENST00000568239 EIF6P56537 245 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms