RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 GRIN3BO60391 1043 aa9.92□□□□□ -0.82
SMG1-204ENST00000561940 CPSF6Q16630 551 aaKnown RBP eCLIP9.92□□□□□ -0.82
SMG1-204ENST00000561940 HID1Q8IV36 788 aa9.92□□□□□ -0.82
SMG1-204ENST00000561940 DPH2Q9BQC3 489 aaPredicted RBP9.92□□□□□ -0.82
SMG1-204ENST00000561940 GARTP22102 1010 aa9.91□□□□□ -0.82
SMG1-204ENST00000561940 EIF4A3P38919 411 aaKnown RBP9.91□□□□□ -0.82
SMG1-204ENST00000561940 DIEXFQ68CQ4 756 aaKnown RBP9.91□□□□□ -0.82
SMG1-204ENST00000561940 CCDC84Q86UT8 332 aaPredicted RBP9.91□□□□□ -0.82
SMG1-204ENST00000561940 FOXQ1Q9C009 403 aa9.91□□□□□ -0.82
SMG1-204ENST00000561940 TJP2Q9UDY2 1190 aa9.91□□□□□ -0.82
SMG1-204ENST00000561940 INPP5FQ9Y2H2 1132 aa9.91□□□□□ -0.82
SMG1-204ENST00000561940 KIAA1324LA8MWY0 1029 aaPredicted RBP9.9□□□□□ -0.82
SMG1-204ENST00000561940 LRIG2O94898 1065 aa9.9□□□□□ -0.82
SMG1-204ENST00000561940 PLCG1P19174 1290 aa9.9□□□□□ -0.82
SMG1-204ENST00000561940 SPINK2P20155 84 aa9.9□□□□□ -0.82
SMG1-204ENST00000561940 XP32Q5T750 250 aa9.9□□□□□ -0.82
SMG1-204ENST00000561940 PRAMEF13Q5VWM6 474 aa9.9□□□□□ -0.82
SMG1-204ENST00000561940 ARHGAP27Q6ZUM4 889 aa9.9□□□□□ -0.82
SMG1-204ENST00000561940 DTX1Q86Y01 620 aa9.9□□□□□ -0.82
SMG1-204ENST00000561940 RIN3Q8TB24 985 aa9.9□□□□□ -0.82
SMG1-204ENST00000561940 ZNF296Q8WUU4 475 aaPredicted RBP9.9□□□□□ -0.82
SMG1-204ENST00000561940 MIPEPQ99797 713 aa9.9□□□□□ -0.82
SMG1-204ENST00000561940 ADAMTS1Q9UHI8 967 aa9.9□□□□□ -0.82
SMG1-204ENST00000561940 SLITRK5O94991 958 aa9.89□□□□□ -0.83
SMG1-204ENST00000561940 PDE4BQ07343 736 aa9.89□□□□□ -0.83
SMG1-204ENST00000561940 PAK2Q13177 524 aa9.89□□□□□ -0.83
SMG1-204ENST00000561940 MSMPQ1L6U9 139 aa9.89□□□□□ -0.83
SMG1-204ENST00000561940 HEXIM2Q96MH2 286 aaKnown RBP9.89□□□□□ -0.83
SMG1-204ENST00000561940 UPK3BL1B0FP48 263 aa9.88□□□□□ -0.83
SMG1-204ENST00000561940 UPK3BL2E5RIL1 263 aa9.88□□□□□ -0.83
SMG1-204ENST00000561940 ITIH2P19823 946 aa9.88□□□□□ -0.83
SMG1-204ENST00000561940 FAM196AQ6ZSG2 479 aa9.88□□□□□ -0.83
SMG1-204ENST00000561940 PLD6Q8N2A8 252 aaKnown RBP9.88□□□□□ -0.83
SMG1-204ENST00000561940 PPP1R1BQ9UD71 204 aaPredicted RBP9.88□□□□□ -0.83
SMG1-204ENST00000561940 POLR3KQ9Y2Y1 108 aaPredicted RBP9.88□□□□□ -0.83
SMG1-204ENST00000561940 CNTNAP4Q9C0A0 1308 aa9.87□□□□□ -0.83
SMG1-204ENST00000561940 EOMESO95936 686 aa9.87□□□□□ -0.83
SMG1-204ENST00000561940 FAM214BQ7L5A3 538 aa9.87□□□□□ -0.83
SMG1-204ENST00000561940 ACSF2Q96CM8 615 aaPredicted RBP9.87□□□□□ -0.83
SMG1-204ENST00000561940 TMEM87BQ96K49 555 aa9.87□□□□□ -0.83
SMG1-204ENST00000561940 DRC1Q96MC2 740 aa9.87□□□□□ -0.83
SMG1-204ENST00000561940 TPX2Q9ULW0 747 aaKnown RBP9.87□□□□□ -0.83
SMG1-204ENST00000561940 SUPT16HQ9Y5B9 1047 aaKnown RBP9.87□□□□□ -0.83
SMG1-204ENST00000561940 TACC3Q9Y6A5 838 aa9.87□□□□□ -0.83
SMG1-204ENST00000561940 CST3P01034 146 aaPredicted RBP9.86□□□□□ -0.83
SMG1-204ENST00000561940 DNAJA1P31689 397 aaKnown RBP9.86□□□□□ -0.83
SMG1-204ENST00000561940 SLC43A3Q8NBI5 491 aa9.86□□□□□ -0.83
SMG1-204ENST00000561940 SPON2Q9BUD6 331 aa9.86□□□□□ -0.83
SMG1-204ENST00000561940 UBP1Q9NZI7 540 aa9.86□□□□□ -0.83
SMG1-204ENST00000561940 GREM1O60565 184 aa9.85□□□□□ -0.83
SMG1-204ENST00000561940 WNT11O96014 354 aa9.85□□□□□ -0.83
SMG1-204ENST00000561940 CRKP46108 304 aa9.85□□□□□ -0.83
SMG1-204ENST00000561940 OXCT1P55809 520 aa9.85□□□□□ -0.83
SMG1-204ENST00000561940 BNIP3Q12983 259 aa9.85□□□□□ -0.83
SMG1-204ENST00000561940 MPP2Q14168 576 aa9.85□□□□□ -0.83
SMG1-204ENST00000561940 LETMD1Q6P1Q0 360 aa9.85□□□□□ -0.83
SMG1-204ENST00000561940 REC114Q7Z4M0 266 aa9.85□□□□□ -0.83
SMG1-204ENST00000561940 CDH24Q86UP0 819 aa9.85□□□□□ -0.83
SMG1-204ENST00000561940 MFSD2AQ8NA29 543 aa9.85□□□□□ -0.83
SMG1-204ENST00000561940 TANGO6Q9C0B7 1094 aa9.85□□□□□ -0.83
SMG1-204ENST00000561940 BRMS1Q9HCU9 246 aa9.85□□□□□ -0.83
SMG1-204ENST00000561940 CCDC39Q9UFE4 941 aa9.85□□□□□ -0.83
SMG1-204ENST00000561940 LOC105371045A0A1W2PR82 267 aa9.84□□□□□ -0.83
SMG1-204ENST00000561940 CAP2P40123 477 aa9.84□□□□□ -0.83
SMG1-204ENST00000561940 GJA8P48165 433 aa9.84□□□□□ -0.83
SMG1-204ENST00000561940 SF3A1Q15459 793 aaKnown RBP9.84□□□□□ -0.83
SMG1-204ENST00000561940 SEZ6Q53EL9 994 aa9.84□□□□□ -0.83
SMG1-204ENST00000561940 SLC6A19Q695T7 634 aa9.84□□□□□ -0.83
SMG1-204ENST00000561940 KIAA0825Q8IV33 1275 aa9.84□□□□□ -0.83
SMG1-204ENST00000561940 MCATQ8IVS2 390 aaKnown RBP9.84□□□□□ -0.83
SMG1-204ENST00000561940 MRPL41Q8IXM3 137 aaKnown RBP9.84□□□□□ -0.83
SMG1-204ENST00000561940 FAM13CQ8NE31 585 aa9.84□□□□□ -0.83
SMG1-204ENST00000561940 NETO1Q8TDF5 533 aa9.84□□□□□ -0.83
SMG1-204ENST00000561940 BSDC1Q9NW68 430 aaPredicted RBP9.84□□□□□ -0.83
SMG1-204ENST00000561940 REV1Q9UBZ9 1251 aa9.84□□□□□ -0.83
SMG1-204ENST00000561940 KLHL3Q9UH77 587 aa9.84□□□□□ -0.83
SMG1-204ENST00000561940 GTF2IRD1Q9UHL9 959 aa9.84□□□□□ -0.83
SMG1-204ENST00000561940 ANGEL1Q9UNK9 670 aaKnown RBP9.84□□□□□ -0.83
SMG1-204ENST00000561940 PLAGL2Q9UPG8 496 aa9.84□□□□□ -0.83
SMG1-204ENST00000561940 CHURC1-FNTBB4DL54 471 aa9.83□□□□□ -0.84
SMG1-204ENST00000561940 GNL2Q13823 731 aaKnown RBP9.83□□□□□ -0.84
SMG1-204ENST00000561940 GPRASP2Q96D09 838 aa9.83□□□□□ -0.84
SMG1-204ENST00000561940 EAF1Q96JC9 268 aaPredicted RBP9.83□□□□□ -0.84
SMG1-204ENST00000561940 PRDM5Q9NQX1 630 aaPredicted RBP9.83□□□□□ -0.84
SMG1-204ENST00000561940 ADAM30Q9UKF2 790 aa9.83□□□□□ -0.84
SMG1-204ENST00000561940 HTR3BO95264 441 aa9.82□□□□□ -0.84
SMG1-204ENST00000561940 GP2P55259 537 aaKnown RBP9.82□□□□□ -0.84
SMG1-204ENST00000561940 CWF19L2Q2TBE0 894 aaKnown RBP9.82□□□□□ -0.84
SMG1-204ENST00000561940 KCNQ5Q9NR82 932 aa9.82□□□□□ -0.84
SMG1-204ENST00000561940 PRR33A8MZF0 331 aa9.81□□□□□ -0.84
SMG1-204ENST00000561940 CEACAM5P06731 702 aa9.81□□□□□ -0.84
SMG1-204ENST00000561940 MCM4P33991 863 aa9.81□□□□□ -0.84
SMG1-204ENST00000561940 CD96P40200 585 aa9.81□□□□□ -0.84
SMG1-204ENST00000561940 APOBRQ0VD83 1088 aa9.81□□□□□ -0.84
SMG1-204ENST00000561940 ZNF574Q6ZN55 896 aaPredicted RBP9.81□□□□□ -0.84
SMG1-204ENST00000561940 GMLQ99445 158 aa9.81□□□□□ -0.84
SMG1-204ENST00000561940 PCDHB14Q9Y5E9 798 aa9.81□□□□□ -0.84
SMG1-204ENST00000561940 DNAJA2O60884 412 aa9.8□□□□□ -0.84
SMG1-204ENST00000561940 CBX7O95931 251 aa9.8□□□□□ -0.84
SMG1-204ENST00000561940 ARID5AQ03989 594 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms