RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 TMEM87AQ8NBN3 555 aa16.06■□□□□ 0.16
TPM1-215ENST00000558868 ANKS1AQ92625 1134 aa16.06■□□□□ 0.16
TPM1-215ENST00000558868 C8orf76Q96K31 380 aa16.06■□□□□ 0.16
TPM1-215ENST00000558868 HDAC9Q9UKV0 1011 aa16.06■□□□□ 0.16
TPM1-215ENST00000558868 DDX49Q9Y6V7 483 aaKnown RBP16.06■□□□□ 0.16
TPM1-215ENST00000558868 MYH1P12882 1939 aa16.06■□□□□ 0.16
TPM1-215ENST00000558868 SMIM22K7EJ46 135 aa16.05■□□□□ 0.16
TPM1-215ENST00000558868 WDHD1O75717 1129 aaPredicted RBP16.05■□□□□ 0.16
TPM1-215ENST00000558868 TSPY3P0CV98 308 aa16.05■□□□□ 0.16
TPM1-215ENST00000558868 TSPY8P0CW00 308 aa16.05■□□□□ 0.16
TPM1-215ENST00000558868 FDPSP14324 419 aaKnown RBP16.05■□□□□ 0.16
TPM1-215ENST00000558868 ADD1P35611 737 aaKnown RBP16.05■□□□□ 0.16
TPM1-215ENST00000558868 CDK8P49336 464 aa16.05■□□□□ 0.16
TPM1-215ENST00000558868 PLCD1P51178 756 aa16.05■□□□□ 0.16
TPM1-215ENST00000558868 KRT85P78386 507 aa16.05■□□□□ 0.16
TPM1-215ENST00000558868 ATL3Q6DD88 541 aa16.05■□□□□ 0.16
TPM1-215ENST00000558868 RAB11FIP4Q86YS3 637 aa16.05■□□□□ 0.16
TPM1-215ENST00000558868 DYNLL2Q96FJ2 89 aa16.05■□□□□ 0.16
TPM1-215ENST00000558868 SGIP1Q9BQI5 828 aa16.05■□□□□ 0.16
TPM1-215ENST00000558868 ZNF277Q9NRM2 450 aaPredicted RBP16.05■□□□□ 0.16
TPM1-215ENST00000558868 SWAP70Q9UH65 585 aa16.05■□□□□ 0.16
TPM1-215ENST00000558868 ZNRF3Q9ULT6 936 aa16.05■□□□□ 0.16
TPM1-215ENST00000558868 PSME4Q14997 1843 aa16.05■□□□□ 0.16
TPM1-215ENST00000558868 SCN9AQ15858 1988 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 YDJCA8MPS7 323 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 FMNL1O95466 1100 aaPredicted RBP16.04■□□□□ 0.16
TPM1-215ENST00000558868 VIL1P09327 827 aaKnown RBP16.04■□□□□ 0.16
TPM1-215ENST00000558868 CDC27P30260 824 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 MMP14P50281 582 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 RESTQ13127 1097 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 PICALMQ13492 652 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 TRIM29Q14134 588 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 NTRK3Q16288 839 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 FAM47AQ5JRC9 791 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 NUP133Q8WUM0 1156 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 MAP3K14Q99558 947 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 IDI2Q9BXS1 227 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 OSBPL5Q9H0X9 879 aaPredicted RBP16.04■□□□□ 0.16
TPM1-215ENST00000558868 TAOK3Q9H2K8 898 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 DHX36Q9H2U1 1008 aaKnown RBP16.04■□□□□ 0.16
TPM1-215ENST00000558868 KAT14Q9H8E8 782 aa16.04■□□□□ 0.16
TPM1-215ENST00000558868 FAM217BQ9NTX9 383 aaPredicted RBP16.04■□□□□ 0.16
TPM1-215ENST00000558868 ZNF646O15015 1829 aaPredicted RBP16.03■□□□□ 0.16
TPM1-215ENST00000558868 DTNBO60941 627 aa16.03■□□□□ 0.16
TPM1-215ENST00000558868 RXRAP19793 462 aa16.03■□□□□ 0.16
TPM1-215ENST00000558868 RASA1P20936 1047 aa16.03■□□□□ 0.16
TPM1-215ENST00000558868 KIF5BP33176 963 aa16.03■□□□□ 0.16
TPM1-215ENST00000558868 GSE1Q14687 1217 aa16.03■□□□□ 0.16
TPM1-215ENST00000558868 PPP4R3BQ5MIZ7 849 aa16.03■□□□□ 0.16
TPM1-215ENST00000558868 CCDC144CPQ8IYA2 1237 aa16.03■□□□□ 0.16
TPM1-215ENST00000558868 NEDD1Q8NHV4 660 aa16.03■□□□□ 0.16
TPM1-215ENST00000558868 CTCFLQ8NI51 663 aaPredicted RBP16.03■□□□□ 0.16
TPM1-215ENST00000558868 JDP2Q8WYK2 163 aa16.03■□□□□ 0.16
TPM1-215ENST00000558868 ALG1Q9BT22 464 aa16.03■□□□□ 0.16
TPM1-215ENST00000558868 MYL10Q9BUA6 226 aa16.03■□□□□ 0.16
TPM1-215ENST00000558868 SCAND2PQ9GZW5 306 aaPredicted RBP16.03■□□□□ 0.16
TPM1-215ENST00000558868 LTBP3Q9NS15 1303 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 AKAP17AQ02040 695 aaKnown RBP16.02■□□□□ 0.16
TPM1-215ENST00000558868 EVX2Q03828 476 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 DNM1Q05193 864 aaKnown RBP16.02■□□□□ 0.16
TPM1-215ENST00000558868 SLC4A8Q2Y0W8 1093 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 FOXD4L6Q3SYB3 417 aaPredicted RBP16.02■□□□□ 0.16
TPM1-215ENST00000558868 FOXD4L3Q6VB84 417 aaPredicted RBP16.02■□□□□ 0.16
TPM1-215ENST00000558868 FERMT3Q86UX7 667 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 TNS4Q8IZW8 715 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 KLHL34Q8N239 644 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 OGFOD1Q8N543 542 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 AGBL3Q8NEM8 1001 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 FBXO18Q8NFZ0 1043 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 ZNF396Q96N95 335 aaPredicted RBP16.02■□□□□ 0.16
TPM1-215ENST00000558868 SLC26A6Q9BXS9 759 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 EHD4Q9H223 541 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 TMOD2Q9NZR1 351 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 CFAP45Q9UL16 551 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 CNPY2Q9Y2B0 182 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 ECM29Q5VYK3 1845 aa16.02■□□□□ 0.16
TPM1-215ENST00000558868 BRCA1P38398 1863 aaKnown RBP16.01■□□□□ 0.15
TPM1-215ENST00000558868 PSMD14O00487 310 aa16.01■□□□□ 0.15
TPM1-215ENST00000558868 DEXIO95424 95 aa16.01■□□□□ 0.15
TPM1-215ENST00000558868 PTGER2P43116 358 aa16.01■□□□□ 0.15
TPM1-215ENST00000558868 GNAQP50148 359 aa16.01■□□□□ 0.15
TPM1-215ENST00000558868 TNIP1Q15025 636 aa16.01■□□□□ 0.15
TPM1-215ENST00000558868 CFAP100Q494V2 611 aa16.01■□□□□ 0.15
TPM1-215ENST00000558868 BRAPQ7Z569 592 aa16.01■□□□□ 0.15
TPM1-215ENST00000558868 USP48Q86UV5 1035 aa16.01■□□□□ 0.15
TPM1-215ENST00000558868 CRACR2BQ8N4Y2 399 aaPredicted RBP16.01■□□□□ 0.15
TPM1-215ENST00000558868 RNF26Q9BY78 433 aaPredicted RBP16.01■□□□□ 0.15
TPM1-215ENST00000558868 FHDC1Q9C0D6 1143 aaPredicted RBP16.01■□□□□ 0.15
TPM1-215ENST00000558868 DDX4Q9NQI0 724 aaKnown RBP16.01■□□□□ 0.15
TPM1-215ENST00000558868 SERPINB13Q9UIV8 391 aa16.01■□□□□ 0.15
TPM1-215ENST00000558868 ENTPD3O75355 529 aa16■□□□□ 0.15
TPM1-215ENST00000558868 RAD17O75943 681 aa16■□□□□ 0.15
TPM1-215ENST00000558868 UBE2HP62256 183 aa16■□□□□ 0.15
TPM1-215ENST00000558868 GABPAQ06546 454 aa16■□□□□ 0.15
TPM1-215ENST00000558868 TROAPQ12815 778 aa16■□□□□ 0.15
TPM1-215ENST00000558868 PHKBQ93100 1093 aa16■□□□□ 0.15
TPM1-215ENST00000558868 GMLQ99445 158 aa16■□□□□ 0.15
TPM1-215ENST00000558868 SYT17Q9BSW7 474 aa16■□□□□ 0.15
TPM1-215ENST00000558868 RBM27Q9P2N5 1060 aaKnown RBP16■□□□□ 0.15
TPM1-215ENST00000558868 BCS1LQ9Y276 419 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms