RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CEBPZQ03701 1054 aaKnown RBP30.56■■■□□ 2.48
CCDC88C-205ENST00000553403 ANP32BQ92688 251 aaKnown RBP30.56■■■□□ 2.48
CCDC88C-205ENST00000553403 POLR3EQ9NVU0 708 aa30.56■■■□□ 2.48
CCDC88C-205ENST00000553403 YEATS4O95619 227 aa30.55■■■□□ 2.48
CCDC88C-205ENST00000553403 TEX11Q8IYF3 940 aa30.55■■■□□ 2.48
CCDC88C-205ENST00000553403 FTOQ9C0B1 505 aaKnown RBP eCLIP30.55■■■□□ 2.48
CCDC88C-205ENST00000553403 NUP62CLQ9H1M0 184 aa30.55■■■□□ 2.48
CCDC88C-205ENST00000553403 CCDC178Q5BJE1 867 aa30.55■■■□□ 2.48
CCDC88C-205ENST00000553403 OLFM4Q6UX06 510 aa30.55■■■□□ 2.48
CCDC88C-205ENST00000553403 RNF26Q9BY78 433 aaPredicted RBP30.55■■■□□ 2.48
CCDC88C-205ENST00000553403 TSPY2A6NKD2 308 aa30.54■■■□□ 2.48
CCDC88C-205ENST00000553403 POLR3DP05423 398 aaPredicted RBP30.54■■■□□ 2.48
CCDC88C-205ENST00000553403 RHBDL3P58872 404 aa30.54■■■□□ 2.48
CCDC88C-205ENST00000553403 TROAPQ12815 778 aa30.54■■■□□ 2.48
CCDC88C-205ENST00000553403 FAM47AQ5JRC9 791 aa30.54■■■□□ 2.48
CCDC88C-205ENST00000553403 DACT1Q9NYF0 836 aa30.54■■■□□ 2.48
CCDC88C-205ENST00000553403 U2AF2P26368 475 aaKnown RBP eCLIP30.53■■■□□ 2.48
CCDC88C-205ENST00000553403 POLD1P28340 1107 aa30.52■■■□□ 2.48
CCDC88C-205ENST00000553403 MAPKAPK5Q8IW41 473 aa30.52■■■□□ 2.48
CCDC88C-205ENST00000553403 LINC00301Q8NCQ3 95 aa30.52■■■□□ 2.48
CCDC88C-205ENST00000553403 KCNG4Q8TDN1 519 aa30.52■■■□□ 2.48
CCDC88C-205ENST00000553403 ANKS1AQ92625 1134 aa30.52■■■□□ 2.48
CCDC88C-205ENST00000553403 FUCA2Q9BTY2 467 aa30.52■■■□□ 2.48
CCDC88C-205ENST00000553403 CDK5RAP2Q96SN8 1893 aa30.52■■■□□ 2.48
CCDC88C-205ENST00000553403 DDX60LQ5H9U9 1706 aaKnown RBP30.52■■■□□ 2.48
CCDC88C-205ENST00000553403 CCDC173Q0VFZ6 552 aa30.52■■■□□ 2.48
CCDC88C-205ENST00000553403 CNKSR1Q969H4 720 aa30.52■■■□□ 2.48
CCDC88C-205ENST00000553403 CLSTN2Q9H4D0 955 aa30.52■■■□□ 2.48
CCDC88C-205ENST00000553403 ZNF287Q9HBT7 754 aa30.52■■■□□ 2.48
CCDC88C-205ENST00000553403 DAGLAQ9Y4D2 1042 aa30.52■■■□□ 2.48
CCDC88C-205ENST00000553403 MKNK2Q9HBH9 465 aa30.51■■■□□ 2.47
CCDC88C-205ENST00000553403 TCP11L1Q9NUJ3 509 aa30.51■■■□□ 2.47
CCDC88C-205ENST00000553403 GUCY1A2P33402 732 aa30.5■■■□□ 2.47
CCDC88C-205ENST00000553403 STK38Q15208 465 aa30.5■■■□□ 2.47
CCDC88C-205ENST00000553403 MAP3K11Q16584 847 aa30.5■■■□□ 2.47
CCDC88C-205ENST00000553403 DGKHQ86XP1 1220 aa30.5■■■□□ 2.47
CCDC88C-205ENST00000553403 DYNLL2Q96FJ2 89 aa30.5■■■□□ 2.47
CCDC88C-205ENST00000553403 PPP1R9BQ96SB3 815 aa30.5■■■□□ 2.47
CCDC88C-205ENST00000553403 G3V3G9 751 aa30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 PRPF3O43395 683 aaKnown RBP30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 MMP1P03956 469 aa30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 TFAP4Q01664 338 aa30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 AKAP17AQ02040 695 aaKnown RBP30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 FUT2Q10981 343 aa30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 GNL2Q13823 731 aaKnown RBP30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 SAFBQ15424 915 aaKnown RBP eCLIP30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 DOK7Q18PE1 504 aa30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 DCAF8Q5TAQ9 597 aa30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 ANO1Q5XXA6 986 aa30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 CCAR1Q8IX12 1150 aaKnown RBP30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 GNL3Q9BVP2 549 aaKnown RBP eCLIP30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 CLIC4Q9Y696 253 aa30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 FLT1P17948 1338 aa30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 RBM43Q6ZSC3 357 aaKnown RBP30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 PODNQ7Z5L7 613 aa30.49■■■□□ 2.47
CCDC88C-205ENST00000553403 A0A1W2PQ27 194 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 A0A1W2PQ64 194 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 A0A1W2PQD8 194 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 NMT2O60551 498 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 NR1I2O75469 434 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 ME1P48163 572 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 ADALQ6DHV7 355 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 RCSD1Q6JBY9 416 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 TMTC3Q6ZXV5 915 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 ZNF444Q8N0Y2 327 aaPredicted RBP30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 CERS5Q8N5B7 392 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 CTCFLQ8NI51 663 aaPredicted RBP30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 FBXW7Q969H0 707 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 MAP3K14Q99558 947 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 SGIP1Q9BQI5 828 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 TNMDQ9H2S6 317 aa30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 SAP30BPQ9UHR5 308 aaKnown RBP30.48■■■□□ 2.47
CCDC88C-205ENST00000553403 UBE2Q2LH0YL09 131 aa30.47■■■□□ 2.47
CCDC88C-205ENST00000553403 PLCD1P51178 756 aa30.47■■■□□ 2.47
CCDC88C-205ENST00000553403 UVSSAQ2YD98 709 aa30.47■■■□□ 2.47
CCDC88C-205ENST00000553403 C16orf86Q6ZW13 317 aa30.47■■■□□ 2.47
CCDC88C-205ENST00000553403 FHDC1Q9C0D6 1143 aaPredicted RBP30.47■■■□□ 2.47
CCDC88C-205ENST00000553403 PCDHA7Q9UN72 937 aa30.47■■■□□ 2.47
CCDC88C-205ENST00000553403 SPTLC2O15270 562 aa30.46■■■□□ 2.47
CCDC88C-205ENST00000553403 SF3A1Q15459 793 aaKnown RBP30.46■■■□□ 2.47
CCDC88C-205ENST00000553403 SLC4A8Q2Y0W8 1093 aa30.46■■■□□ 2.47
CCDC88C-205ENST00000553403 CCDC73Q6ZRK6 1079 aa30.46■■■□□ 2.47
CCDC88C-205ENST00000553403 CMTR1Q8N1G2 835 aaKnown RBP30.46■■■□□ 2.47
CCDC88C-205ENST00000553403 CCDC82Q8N4S0 544 aa30.46■■■□□ 2.47
CCDC88C-205ENST00000553403 FOXP1Q9H334 677 aaPredicted RBP30.46■■■□□ 2.47
CCDC88C-205ENST00000553403 FOCADQ5VW36 1801 aa30.46■■■□□ 2.47
CCDC88C-205ENST00000553403 FKBP1AP62942 108 aaKnown RBP30.46■■■□□ 2.47
CCDC88C-205ENST00000553403 CCDC192P0DO97 292 aa30.45■■■□□ 2.46
CCDC88C-205ENST00000553403 XBP1P17861 261 aa30.45■■■□□ 2.46
CCDC88C-205ENST00000553403 CC2D2BQ6DHV5 1058 aa30.45■■■□□ 2.46
CCDC88C-205ENST00000553403 KAT14Q9H8E8 782 aa30.45■■■□□ 2.46
CCDC88C-205ENST00000553403 IL17RBQ9NRM6 502 aa30.45■■■□□ 2.46
CCDC88C-205ENST00000553403 TTF2Q9UNY4 1162 aaKnown RBP30.45■■■□□ 2.46
CCDC88C-205ENST00000553403 SLX4Q8IY92 1834 aa30.45■■■□□ 2.46
CCDC88C-205ENST00000553403 RASA1P20936 1047 aa30.44■■■□□ 2.46
CCDC88C-205ENST00000553403 SLC39A14Q15043 492 aa30.44■■■□□ 2.46
CCDC88C-205ENST00000553403 HHIPL2Q6UWX4 724 aa30.44■■■□□ 2.46
CCDC88C-205ENST00000553403 RNF214Q8ND24 703 aa30.44■■■□□ 2.46
CCDC88C-205ENST00000553403 PLEKHA8P1O95397 391 aa30.43■■■□□ 2.46
CCDC88C-205ENST00000553403 TSPY3P0CV98 308 aa30.43■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms