RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 RGL1Q9NZL6 768 aa10.02□□□□□ -0.81
VPS13D-212ENST00000543766 PAIP2BQ9ULR5 123 aaKnown RBP10.02□□□□□ -0.81
VPS13D-212ENST00000543766 SGTAO43765 313 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 SLC4A10Q6U841 1118 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 FNBP4Q8N3X1 1017 aaPredicted RBP10.01□□□□□ -0.81
VPS13D-212ENST00000543766 UROC1Q96N76 676 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 FERD3LQ96RJ6 166 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 DCAF16Q9NXF7 216 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.01□□□□□ -0.81
VPS13D-212ENST00000543766 SEPT10Q9P0V9 454 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 A0A0B4J203 849 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 SART1O43290 800 aaKnown RBP10.01□□□□□ -0.81
VPS13D-212ENST00000543766 PPP1R12BO60237 982 aaPredicted RBP10.01□□□□□ -0.81
VPS13D-212ENST00000543766 CENPAP49450 140 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 HSP90AA4PQ58FG1 418 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 FIP1L1Q6UN15 594 aaKnown RBP10.01□□□□□ -0.81
VPS13D-212ENST00000543766 ZNF280CQ8ND82 737 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 MAK16Q9BXY0 300 aaKnown RBP10.01□□□□□ -0.81
VPS13D-212ENST00000543766 VCPKMTQ9H867 229 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 K7ELQ4 463 aaPredicted RBP10.01□□□□□ -0.81
VPS13D-212ENST00000543766 GPSM2P81274 684 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 CRYMQ14894 314 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 ANKRD13DQ6ZTN6 518 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 STAG1Q8WVM7 1258 aa10.01□□□□□ -0.81
VPS13D-212ENST00000543766 EIF2AK1Q9BQI3 630 aaKnown RBP10.01□□□□□ -0.81
VPS13D-212ENST00000543766 AATFQ9NY61 560 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS13D-212ENST00000543766 ZC3H13Q5T200 1668 aaKnown RBP10□□□□□ -0.81
VPS13D-212ENST00000543766 RAPGEF3O95398 923 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 PARP1P09874 1014 aaKnown RBP10□□□□□ -0.81
VPS13D-212ENST00000543766 PPP2R1AP30153 589 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 PLEKHG6Q3KR16 790 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 GJC2Q5T442 439 aaPredicted RBP10□□□□□ -0.81
VPS13D-212ENST00000543766 GOLGA5Q8TBA6 731 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 NOL12Q9UGY1 213 aaKnown RBP eCLIP10□□□□□ -0.81
VPS13D-212ENST00000543766 ATP6V0A2Q9Y487 856 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 KANK1Q14678 1352 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 LMTK3Q96Q04 1460 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 MUSKO15146 869 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 HOXA10P31260 410 aaPredicted RBP10□□□□□ -0.81
VPS13D-212ENST00000543766 ARHGEF6Q15052 776 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 Q3C1V9 767 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 MUM1L1Q5H9M0 696 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 DSTYKQ6XUX3 929 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 EFCAB6Q5THR3 1501 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 RAD50Q92878 1312 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 KDM4FA0A1W2PPD8 638 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 NDUFAB1O14561 156 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 FYB1O15117 783 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 GRIK3Q13003 919 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 CUL4BQ13620 913 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 LRRFIP1Q32MZ4 808 aaKnown RBP10□□□□□ -0.81
VPS13D-212ENST00000543766 SDE2Q6IQ49 451 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 CAVIN1Q6NZI2 390 aaKnown RBP10□□□□□ -0.81
VPS13D-212ENST00000543766 PTPRHQ9HD43 1115 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 DNAAF2Q9NVR5 837 aaKnown RBP10□□□□□ -0.81
VPS13D-212ENST00000543766 EPB41L3Q9Y2J2 1087 aaPredicted RBP10□□□□□ -0.81
VPS13D-212ENST00000543766 SNX5Q9Y5X3 404 aa10□□□□□ -0.81
VPS13D-212ENST00000543766 BTBD11A6QL63 1104 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 TMEM110-MUSTN1A8MSY1 372 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 FOXD2O60548 495 aaPredicted RBP9.99□□□□□ -0.81
VPS13D-212ENST00000543766 MBD4O95243 580 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 GKAP1Q5VSY0 366 aaPredicted RBP9.99□□□□□ -0.81
VPS13D-212ENST00000543766 LRRC31Q6UY01 552 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 BICD2Q8TD16 824 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 TSKSQ9UJT2 592 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 GEMIN4P57678 1058 aaKnown RBP9.99□□□□□ -0.81
VPS13D-212ENST00000543766 CCDC158Q5M9N0 1113 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 ATF7IPQ6VMQ6 1270 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 VCX3BQ9H321 246 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 ANO2Q9NQ90 1003 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 A6NJR5 290 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 SPDYE16A6NNV3 312 aaPredicted RBP9.99□□□□□ -0.81
VPS13D-212ENST00000543766 P4HA2O15460 535 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 ERLIN2O94905 339 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 NCBP1Q09161 790 aaKnown RBP9.99□□□□□ -0.81
VPS13D-212ENST00000543766 SIM2Q14190 667 aaPredicted RBP9.99□□□□□ -0.81
VPS13D-212ENST00000543766 TCERG1LQ5VWI1 586 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 CARD8Q9Y2G2 431 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 C2CD2Q9Y426 696 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 ASXL1Q8IXJ9 1541 aa9.99□□□□□ -0.81
VPS13D-212ENST00000543766 MTRF1O75570 445 aaKnown RBP9.98□□□□□ -0.81
VPS13D-212ENST00000543766 HARSP12081 509 aaKnown RBP9.98□□□□□ -0.81
VPS13D-212ENST00000543766 NEK2P51955 445 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 FLIIQ13045 1269 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 RASA2Q15283 850 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 TAF11Q15544 211 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 NEK5Q6P3R8 708 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 EPAS1Q99814 870 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 NEMFO60524 1076 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 PRMT3O60678 531 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 DNAJA1P31689 397 aaKnown RBP9.98□□□□□ -0.81
VPS13D-212ENST00000543766 LIG3P49916 1009 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 GATAD2AQ86YP4 633 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 LILRB2Q8N423 598 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 DDX11Q96FC9 970 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 NSRP1Q9H0G5 558 aaKnown RBP9.98□□□□□ -0.81
VPS13D-212ENST00000543766 ZNF518AQ6AHZ1 1483 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 UBASH3AP57075 661 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 COX10Q12887 443 aa9.98□□□□□ -0.81
VPS13D-212ENST00000543766 KCNB1Q14721 858 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms