RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 MCCP23508 829 aa17.73■□□□□ 0.43
NUP54-213ENST00000513352 CAP2P40123 477 aa17.73■□□□□ 0.43
NUP54-213ENST00000513352 GRM1Q13255 1194 aa17.73■□□□□ 0.43
NUP54-213ENST00000513352 RRP1BQ14684 758 aaKnown RBP17.73■□□□□ 0.43
NUP54-213ENST00000513352 ABCB5Q2M3G0 1257 aa17.73■□□□□ 0.43
NUP54-213ENST00000513352 TATDN1Q6P1N9 297 aa17.73■□□□□ 0.43
NUP54-213ENST00000513352 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.73■□□□□ 0.43
NUP54-213ENST00000513352 SAPCD2Q86UD0 394 aa17.73■□□□□ 0.43
NUP54-213ENST00000513352 SCYL3Q8IZE3 742 aa17.73■□□□□ 0.43
NUP54-213ENST00000513352 STAG1Q8WVM7 1258 aa17.73■□□□□ 0.43
NUP54-213ENST00000513352 SLC10A4Q96EP9 437 aa17.73■□□□□ 0.43
NUP54-213ENST00000513352 NBPF3Q9H094 633 aa17.73■□□□□ 0.43
NUP54-213ENST00000513352 TAOK2Q9UL54 1235 aa17.73■□□□□ 0.43
NUP54-213ENST00000513352 GH2P01242 217 aa17.72■□□□□ 0.43
NUP54-213ENST00000513352 AKR1B1P15121 316 aa17.72■□□□□ 0.43
NUP54-213ENST00000513352 RASA1P20936 1047 aa17.72■□□□□ 0.43
NUP54-213ENST00000513352 ZNF157P51786 506 aaPredicted RBP17.72■□□□□ 0.43
NUP54-213ENST00000513352 TRDNQ13061 729 aa17.72■□□□□ 0.43
NUP54-213ENST00000513352 SHROOM1Q2M3G4 852 aaPredicted RBP17.72■□□□□ 0.43
NUP54-213ENST00000513352 LDLRAD1Q5T700 205 aa17.72■□□□□ 0.43
NUP54-213ENST00000513352 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.72■□□□□ 0.43
NUP54-213ENST00000513352 NEDD4P46934 1319 aa17.72■□□□□ 0.43
NUP54-213ENST00000513352 TSPY2A6NKD2 308 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 SEC24BO95487 1268 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 ASNSP08243 561 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 TSPY3P0CV98 308 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 TSPY8P0CW00 308 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 ZKSCAN1P17029 563 aaPredicted RBP17.71■□□□□ 0.43
NUP54-213ENST00000513352 HTRA3P83110 453 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 RAB3GAP1Q15042 981 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 NECTIN1Q15223 517 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 FAM47AQ5JRC9 791 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 NOL9Q5SY16 702 aaKnown RBP17.71■□□□□ 0.43
NUP54-213ENST00000513352 CCDC17Q96LX7 622 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 USP26Q9BXU7 913 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 CNNM2Q9H8M5 875 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 ZBTB21Q9ULJ3 1066 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.71■□□□□ 0.43
NUP54-213ENST00000513352 TACC3Q9Y6A5 838 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 SNCAIPQ9Y6H5 919 aa17.71■□□□□ 0.43
NUP54-213ENST00000513352 B4E1Z4 1266 aa17.7■□□□□ 0.42
NUP54-213ENST00000513352 ORC4O43929 436 aa17.7■□□□□ 0.42
NUP54-213ENST00000513352 PCP11498 1178 aaKnown RBP17.7■□□□□ 0.42
NUP54-213ENST00000513352 HSPA6P17066 643 aa17.7■□□□□ 0.42
NUP54-213ENST00000513352 MKRN3Q13064 507 aaKnown RBP17.7■□□□□ 0.42
NUP54-213ENST00000513352 RGMBQ6NW40 437 aa17.7■□□□□ 0.42
NUP54-213ENST00000513352 RALYLQ86SE5 291 aaKnown RBP17.7■□□□□ 0.42
NUP54-213ENST00000513352 CCDC84Q86UT8 332 aaPredicted RBP17.7■□□□□ 0.42
NUP54-213ENST00000513352 OTUD5Q96G74 571 aa17.7■□□□□ 0.42
NUP54-213ENST00000513352 KRT23Q9C075 422 aa17.7■□□□□ 0.42
NUP54-213ENST00000513352 TAF6LQ9Y6J9 622 aa17.7■□□□□ 0.42
NUP54-213ENST00000513352 E7EWF7 191 aa17.69■□□□□ 0.42
NUP54-213ENST00000513352 JAG1P78504 1218 aa17.69■□□□□ 0.42
NUP54-213ENST00000513352 TFAP4Q01664 338 aa17.69■□□□□ 0.42
NUP54-213ENST00000513352 TMEM179Q6ZVK1 233 aa17.69■□□□□ 0.42
NUP54-213ENST00000513352 CNKSR2Q8WXI2 1034 aa17.69■□□□□ 0.42
NUP54-213ENST00000513352 ESR2Q92731 530 aa17.69■□□□□ 0.42
NUP54-213ENST00000513352 OPTNQ96CV9 577 aa17.69■□□□□ 0.42
NUP54-213ENST00000513352 UPF2Q9HAU5 1272 aaKnown RBP17.69■□□□□ 0.42
NUP54-213ENST00000513352 UNCXA6NJT0 531 aa17.68■□□□□ 0.42
NUP54-213ENST00000513352 EPB41L2O43491 1005 aaKnown RBP17.68■□□□□ 0.42
NUP54-213ENST00000513352 PTPRAP18433 802 aa17.68■□□□□ 0.42
NUP54-213ENST00000513352 HSPA4P34932 840 aa17.68■□□□□ 0.42
NUP54-213ENST00000513352 ATP2B2Q01814 1243 aa17.68■□□□□ 0.42
NUP54-213ENST00000513352 SEPT2Q15019 361 aa17.68■□□□□ 0.42
NUP54-213ENST00000513352 DEFB115Q30KQ5 88 aa17.68■□□□□ 0.42
NUP54-213ENST00000513352 ERO1BQ86YB8 467 aa17.68■□□□□ 0.42
NUP54-213ENST00000513352 NCOA7Q8NI08 942 aa17.68■□□□□ 0.42
NUP54-213ENST00000513352 GINM1Q9NU53 330 aa17.68■□□□□ 0.42
NUP54-213ENST00000513352 USP17L5A8MUK1 530 aa17.67■□□□□ 0.42
NUP54-213ENST00000513352 KDM4AO75164 1064 aa17.67■□□□□ 0.42
NUP54-213ENST00000513352 ICA1Q05084 483 aa17.67■□□□□ 0.42
NUP54-213ENST00000513352 KRT32Q14532 448 aa17.67■□□□□ 0.42
NUP54-213ENST00000513352 CYP4F22Q6NT55 531 aa17.67■□□□□ 0.42
NUP54-213ENST00000513352 STOX1Q6ZVD7 989 aa17.67■□□□□ 0.42
NUP54-213ENST00000513352 RASAL3Q86YV0 1011 aa17.67■□□□□ 0.42
NUP54-213ENST00000513352 CLEC10AQ8IUN9 316 aa17.67■□□□□ 0.42
NUP54-213ENST00000513352 WNK4Q96J92 1243 aa17.67■□□□□ 0.42
NUP54-213ENST00000513352 AS3MTQ9HBK9 375 aa17.67■□□□□ 0.42
NUP54-213ENST00000513352 ZHX2Q9Y6X8 837 aa17.67■□□□□ 0.42
NUP54-213ENST00000513352 SPDYE5A6NIY4 337 aa17.66■□□□□ 0.42
NUP54-213ENST00000513352 FGRP09769 529 aa17.66■□□□□ 0.42
NUP54-213ENST00000513352 RASEFQ8IZ41 740 aa17.66■□□□□ 0.42
NUP54-213ENST00000513352 HHIPL1Q96JK4 782 aa17.66■□□□□ 0.42
NUP54-213ENST00000513352 FEZ1Q99689 392 aa17.66■□□□□ 0.42
NUP54-213ENST00000513352 SNX14Q9Y5W7 946 aa17.66■□□□□ 0.42
NUP54-213ENST00000513352 PHIPQ8WWQ0 1821 aa17.65■□□□□ 0.42
NUP54-213ENST00000513352 GREB1LQ9C091 1923 aaPredicted RBP17.65■□□□□ 0.42
NUP54-213ENST00000513352 MYH4Q9Y623 1939 aa17.65■□□□□ 0.42
NUP54-213ENST00000513352 TRIM75PA6NK02 468 aa17.65■□□□□ 0.42
NUP54-213ENST00000513352 RASSF10A6NK89 507 aa17.65■□□□□ 0.42
NUP54-213ENST00000513352 SLC10A3P09131 477 aa17.65■□□□□ 0.42
NUP54-213ENST00000513352 GUCY1A2P33402 732 aa17.65■□□□□ 0.42
NUP54-213ENST00000513352 PPATQ06203 517 aa17.65■□□□□ 0.42
NUP54-213ENST00000513352 NEDD1Q8NHV4 660 aa17.65■□□□□ 0.42
NUP54-213ENST00000513352 CCDC102AQ96A19 550 aa17.65■□□□□ 0.42
NUP54-213ENST00000513352 CAPNS2Q96L46 248 aa17.65■□□□□ 0.42
NUP54-213ENST00000513352 JAKMIP1Q96N16 626 aaKnown RBP17.65■□□□□ 0.42
NUP54-213ENST00000513352 ZKSCAN3Q9BRR0 538 aa17.65■□□□□ 0.42
NUP54-213ENST00000513352 UBAC1Q9BSL1 405 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms