RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 DNAJC18Q9H819 358 aa21.78■■□□□ 1.08
SQSTM1-209ENST00000504627 PHIPQ8WWQ0 1821 aa21.78■■□□□ 1.08
SQSTM1-209ENST00000504627 MYPNQ86TC9 1320 aa21.78■■□□□ 1.08
SQSTM1-209ENST00000504627 MAGEB6P1A0A0J9YX57 407 aa21.77■■□□□ 1.08
SQSTM1-209ENST00000504627 GINM1Q9NU53 330 aa21.77■■□□□ 1.08
SQSTM1-209ENST00000504627 KIAA0100Q14667 2235 aaKnown RBP21.77■■□□□ 1.08
SQSTM1-209ENST00000504627 PDE6AP16499 860 aa21.76■■□□□ 1.07
SQSTM1-209ENST00000504627 EN2P19622 333 aaPredicted RBP21.76■■□□□ 1.07
SQSTM1-209ENST00000504627 TTC6Q86TZ1 520 aa21.76■■□□□ 1.07
SQSTM1-209ENST00000504627 ANKRD13CQ8N6S4 541 aa21.76■■□□□ 1.07
SQSTM1-209ENST00000504627 WDR18Q9BV38 432 aa21.76■■□□□ 1.07
SQSTM1-209ENST00000504627 BOLA2Q9H3K6 86 aa21.76■■□□□ 1.07
SQSTM1-209ENST00000504627 TMOD4Q9NZQ9 345 aa21.76■■□□□ 1.07
SQSTM1-209ENST00000504627 PTPRFP10586 1907 aa21.76■■□□□ 1.07
SQSTM1-209ENST00000504627 MTMR2Q13614 643 aa21.75■■□□□ 1.07
SQSTM1-209ENST00000504627 SH3D19Q5HYK7 790 aa21.75■■□□□ 1.07
SQSTM1-209ENST00000504627 LRRCC1Q9C099 1032 aa21.75■■□□□ 1.07
SQSTM1-209ENST00000504627 BIN2Q9UBW5 565 aaPredicted RBP21.75■■□□□ 1.07
SQSTM1-209ENST00000504627 FOCADQ5VW36 1801 aa21.75■■□□□ 1.07
SQSTM1-209ENST00000504627 ATAD5Q96QE3 1844 aa21.75■■□□□ 1.07
SQSTM1-209ENST00000504627 CDK5RAP2Q96SN8 1893 aa21.75■■□□□ 1.07
SQSTM1-209ENST00000504627 TNPO2O14787 897 aaKnown RBP21.74■■□□□ 1.07
SQSTM1-209ENST00000504627 POLR3DP05423 398 aaPredicted RBP21.74■■□□□ 1.07
SQSTM1-209ENST00000504627 GRK4P32298 578 aa21.74■■□□□ 1.07
SQSTM1-209ENST00000504627 BACE1P56817 501 aa21.74■■□□□ 1.07
SQSTM1-209ENST00000504627 JAG1P78504 1218 aa21.74■■□□□ 1.07
SQSTM1-209ENST00000504627 PRKCZQ05513 592 aa21.74■■□□□ 1.07
SQSTM1-209ENST00000504627 RIOK1Q9BRS2 568 aaKnown RBP21.74■■□□□ 1.07
SQSTM1-209ENST00000504627 CRNKL1Q9BZJ0 848 aaKnown RBP21.74■■□□□ 1.07
SQSTM1-209ENST00000504627 DCTPP1Q9H773 170 aa21.74■■□□□ 1.07
SQSTM1-209ENST00000504627 PAG1Q9NWQ8 432 aa21.74■■□□□ 1.07
SQSTM1-209ENST00000504627 SERPINB13Q9UIV8 391 aa21.74■■□□□ 1.07
SQSTM1-209ENST00000504627 ZBTB21Q9ULJ3 1066 aa21.74■■□□□ 1.07
SQSTM1-209ENST00000504627 ZNF532Q9HCE3 1301 aa21.74■■□□□ 1.07
SQSTM1-209ENST00000504627 SIPA1L1O43166 1804 aa21.73■■□□□ 1.07
SQSTM1-209ENST00000504627 C19orf81C9J6K1 198 aa21.73■■□□□ 1.07
SQSTM1-209ENST00000504627 USP17L10C9JJH3 530 aa21.73■■□□□ 1.07
SQSTM1-209ENST00000504627 ATP5JP18859 108 aa21.73■■□□□ 1.07
SQSTM1-209ENST00000504627 EDC3Q96F86 508 aaKnown RBP21.73■■□□□ 1.07
SQSTM1-209ENST00000504627 EHD4Q9H223 541 aa21.73■■□□□ 1.07
SQSTM1-209ENST00000504627 GH2P01242 217 aa21.72■■□□□ 1.07
SQSTM1-209ENST00000504627 GCLCP48506 637 aaPredicted RBP21.72■■□□□ 1.07
SQSTM1-209ENST00000504627 IRX3P78415 501 aaPredicted RBP21.72■■□□□ 1.07
SQSTM1-209ENST00000504627 FAM110CQ1W6H9 321 aa21.72■■□□□ 1.07
SQSTM1-209ENST00000504627 SHROOM1Q2M3G4 852 aaPredicted RBP21.72■■□□□ 1.07
SQSTM1-209ENST00000504627 PRPF38BQ5VTL8 546 aaKnown RBP21.72■■□□□ 1.07
SQSTM1-209ENST00000504627 ASCC2Q9H1I8 757 aaPredicted RBP21.72■■□□□ 1.07
SQSTM1-209ENST00000504627 MYH1P12882 1939 aa21.71■■□□□ 1.07
SQSTM1-209ENST00000504627 SMARCA5O60264 1052 aaPredicted RBP21.71■■□□□ 1.07
SQSTM1-209ENST00000504627 CERKLQ49MI3 558 aaPredicted RBP21.71■■□□□ 1.07
SQSTM1-209ENST00000504627 TATDN1Q6P1N9 297 aa21.71■■□□□ 1.07
SQSTM1-209ENST00000504627 COA7Q96BR5 231 aa21.71■■□□□ 1.07
SQSTM1-209ENST00000504627 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.71■■□□□ 1.07
SQSTM1-209ENST00000504627 MCM9Q9NXL9 1143 aa21.71■■□□□ 1.07
SQSTM1-209ENST00000504627 GABRQQ9UN88 632 aa21.71■■□□□ 1.07
SQSTM1-209ENST00000504627 UBXN2AP68543 259 aa21.7■■□□□ 1.06
SQSTM1-209ENST00000504627 SLAIN1Q8ND83 568 aa21.7■■□□□ 1.06
SQSTM1-209ENST00000504627 HAUS7Q99871 368 aa21.7■■□□□ 1.06
SQSTM1-209ENST00000504627 CABP5Q9NP86 173 aa21.7■■□□□ 1.06
SQSTM1-209ENST00000504627 TAOK2Q9UL54 1235 aa21.7■■□□□ 1.06
SQSTM1-209ENST00000504627 TCRBV5S4A2TA0A5A2 114 aa21.69■■□□□ 1.06
SQSTM1-209ENST00000504627 FLT3LGP49771 235 aa21.69■■□□□ 1.06
SQSTM1-209ENST00000504627 PLCD1P51178 756 aa21.69■■□□□ 1.06
SQSTM1-209ENST00000504627 NUCB1Q02818 461 aa21.69■■□□□ 1.06
SQSTM1-209ENST00000504627 RAB3GAP1Q15042 981 aa21.69■■□□□ 1.06
SQSTM1-209ENST00000504627 MTFR1Q15390 333 aa21.69■■□□□ 1.06
SQSTM1-209ENST00000504627 ABCB5Q2M3G0 1257 aa21.69■■□□□ 1.06
SQSTM1-209ENST00000504627 FEZ1Q99689 392 aa21.69■■□□□ 1.06
SQSTM1-209ENST00000504627 LOC285556D6RIA3 1793 aa21.69■■□□□ 1.06
SQSTM1-209ENST00000504627 RBBP6Q7Z6E9 1792 aaKnown RBP21.69■■□□□ 1.06
SQSTM1-209ENST00000504627 BRCA2P51587 3418 aa21.68■■□□□ 1.06
SQSTM1-209ENST00000504627 ADCY3O60266 1144 aa21.68■■□□□ 1.06
SQSTM1-209ENST00000504627 ADD2P35612 726 aa21.68■■□□□ 1.06
SQSTM1-209ENST00000504627 USP17L2Q6R6M4 530 aa21.68■■□□□ 1.06
SQSTM1-209ENST00000504627 LCORLQ8N3X6 602 aa21.68■■□□□ 1.06
SQSTM1-209ENST00000504627 SDR42E1Q8WUS8 393 aa21.68■■□□□ 1.06
SQSTM1-209ENST00000504627 ARMT1Q9H993 441 aa21.68■■□□□ 1.06
SQSTM1-209ENST00000504627 HOXA7P31268 230 aaPredicted RBP21.67■■□□□ 1.06
SQSTM1-209ENST00000504627 ZYXQ15942 572 aaKnown RBP21.67■■□□□ 1.06
SQSTM1-209ENST00000504627 MGAMO43451 1857 aa21.66■■□□□ 1.06
SQSTM1-209ENST00000504627 MBD4O95243 580 aa21.66■■□□□ 1.06
SQSTM1-209ENST00000504627 ZSCAN25Q6NSZ9 544 aa21.66■■□□□ 1.06
SQSTM1-209ENST00000504627 NKX2-3Q8TAU0 364 aa21.66■■□□□ 1.06
SQSTM1-209ENST00000504627 GPATCH3Q96I76 525 aa21.66■■□□□ 1.06
SQSTM1-209ENST00000504627 P2RX7Q99572 595 aaKnown RBP21.66■■□□□ 1.06
SQSTM1-209ENST00000504627 RNF208Q9H0X6 261 aa21.66■■□□□ 1.06
SQSTM1-209ENST00000504627 DCP1AQ9NPI6 582 aaPredicted RBP21.66■■□□□ 1.06
SQSTM1-209ENST00000504627 EMILIN3Q9NT22 766 aa21.66■■□□□ 1.06
SQSTM1-209ENST00000504627 ECHDC1Q9NTX5 307 aa21.66■■□□□ 1.06
SQSTM1-209ENST00000504627 MPHOSPH10O00566 681 aaKnown RBP21.65■■□□□ 1.06
SQSTM1-209ENST00000504627 CCL5P13501 91 aa21.65■■□□□ 1.06
SQSTM1-209ENST00000504627 SHMT1P34896 483 aa21.65■■□□□ 1.06
SQSTM1-209ENST00000504627 HERVK_113P62684 666 aa21.65■■□□□ 1.06
SQSTM1-209ENST00000504627 IRF5Q13568 498 aa21.65■■□□□ 1.06
SQSTM1-209ENST00000504627 SLFNL1Q499Z3 407 aa21.65■■□□□ 1.06
SQSTM1-209ENST00000504627 CHD1LQ86WJ1 897 aa21.65■■□□□ 1.06
SQSTM1-209ENST00000504627 PXYLP1Q8TE99 480 aa21.65■■□□□ 1.06
SQSTM1-209ENST00000504627 MKI67P46013 3256 aaKnown RBP21.65■■□□□ 1.06
SQSTM1-209ENST00000504627 ELNP15502 786 aa21.64■■□□□ 1.05
SQSTM1-209ENST00000504627 USP14P54578 494 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms